Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.7e-122 441.8 337 100.0
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.7e-122 441.8 337 100.0
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.3e-121 439.5 337 95.5
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.8e-119 432.6 337 96.7
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 8.3e-119 431.0 337 96.4
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 6.2e-98 361.7 318 81.4
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 1.6e-93 347.1 318 82.1
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 8.6e-92 341.3 334 77.2
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.9e-91 340.1 337 73.6
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 1.2e-90 337.4 315 84.8
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 1.2e-90 337.4 318 69.5
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 2.8e-90 336.3 316 76.6
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 8.1e-90 334.7 315 83.8
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 1.1e-89 334.3 315 83.5
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 1.4e-89 334.0 312 86.5
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.3e-89 333.2 315 84.1
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 4.0e-89 332.4 316 82.9
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 1.5e-88 330.5 316 82.0
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 2.6e-88 329.7 316 82.0
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 2.6e-88 329.7 316 82.0
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 5.8e-88 328.6 338 77.8
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 1.3e-87 327.4 316 75.9
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 1.3e-87 327.4 316 75.3
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 1.7e-87 327.0 316 75.9
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 2.9e-87 326.2 314 75.2
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 3.7e-87 325.9 314 72.3
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 4.9e-87 325.5 315 79.7
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 6.4e-87 325.1 318 74.5
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 6.4e-87 325.1 315 77.8
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 8.4e-87 324.7 316 74.4
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 8.4e-87 324.7 316 73.4
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 8.4e-87 324.7 318 77.4
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 1.1e-86 324.3 316 76.3
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 2.4e-86 323.2 317 76.3
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 7.1e-86 321.6 316 75.6
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 1.2e-85 320.9 311 82.0
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 1.6e-85 320.5 316 75.0
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 1.6e-85 320.5 316 75.0
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 2.1e-85 320.1 316 80.7
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 4.6e-85 318.9 316 81.3
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 1.0e-84 317.8 318 73.3
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 1.3e-84 317.4 318 71.7
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 1.3e-84 317.4 315 81.6
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 1.7e-84 317.0 318 66.7
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 6.6e-84 315.1 318 71.7
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 6.6e-84 315.1 314 73.6
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 8.6e-84 314.7 318 73.0
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 8.6e-84 314.7 317 80.1
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 1.5e-83 313.9 317 75.4
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.9e-83 313.5 342 68.1
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.9e-83 313.5 342 68.1
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 1.9e-83 313.5 318 73.9
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 5.6e-83 312.0 316 78.8
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 5.6e-83 312.0 312 75.0
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 5.6e-83 312.0 314 73.2
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 9.6e-83 311.2 318 75.2
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 2.8e-82 309.7 318 72.0
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 2.8e-82 309.7 316 78.8
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 6.2e-82 308.5 316 71.2
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 8.1e-82 308.1 313 80.5
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 1.4e-81 307.4 318 78.6
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 1.4e-81 307.4 316 70.9
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 3.1e-81 306.2 316 74.7
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 3.1e-81 306.2 316 79.1
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 4.0e-81 305.8 318 76.4
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 4.0e-81 305.8 318 75.2
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 5.2e-81 305.4 316 72.5
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 5.2e-81 305.4 303 76.6
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 6.8e-81 305.1 316 64.2
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 6.8e-81 305.1 316 75.6
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 8.9e-81 304.7 311 78.5
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 8.9e-81 304.7 322 74.2
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 1.2e-80 304.3 318 70.4
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 1.2e-80 304.3 316 78.5
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 1.5e-80 303.9 316 77.8
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 1.5e-80 303.9 318 71.7
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 1.5e-80 303.9 346 60.1
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.6e-80 303.1 315 74.0
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 1.3e-79 300.8 312 75.3
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 1.7e-79 300.4 318 67.3
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 2.2e-79 300.1 318 78.0
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 2.9e-79 299.7 318 66.0
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 6.4e-79 298.5 337 73.3
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 1.6e-77 293.9 315 66.0
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 2.7e-77 293.1 315 73.0
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 1.3e-76 290.8 334 71.6
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.3e-76 290.8 288 84.4
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 3.0e-76 289.7 318 74.5
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 3.9e-76 289.3 318 68.6
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 8.7e-76 288.1 289 83.0
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 1.1e-75 287.7 327 67.0
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 1.5e-75 287.3 346 65.3
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 2.5e-75 286.6 291 81.4
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 5.6e-75 285.4 318 69.5
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 9.6e-75 284.6 310 75.8
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 1.3e-74 284.3 290 83.1
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 2.8e-74 283.1 291 82.5
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 6.2e-74 282.0 290 74.1
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 6.2e-74 282.0 316 68.7
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 3.1e-73 279.6 313 63.3
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 3.1e-73 279.6 313 63.3
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 1.2e-72 277.7 318 74.2
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 2.6e-72 276.6 234 75.6
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 2.2e-71 273.5 233 76.0
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 8.4e-71 271.6 311 63.7
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 3.2e-70 269.6 310 72.9
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 6.0e-69 265.4 289 72.7
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.3e-68 264.2 313 74.1
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 9.6e-67 258.1 315 67.0
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 2.0e-64 250.4 344 54.1
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 3.8e-63 246.1 154 84.4
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 1.6e-61 240.7 216 71.3
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 3.5e-61 239.6 217 66.4
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 6.7e-60 235.3 218 78.4
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 1.5e-59 234.2 297 60.6
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 6.9e-57 225.3 175 77.1
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 2.0e-56 223.8 316 57.0
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 2.6e-56 223.4 193 71.5
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-54 218.0 174 65.5
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 1.1e-54 218.0 314 57.0
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 1.4e-54 217.6 174 65.5
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 2.5e-54 216.9 310 61.6
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 3.0e-52 209.9 174 71.8
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 3.7e-50 203.0 308 64.9
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 6.3e-50 202.2 297 58.9
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 2.4e-49 200.3 186 81.2
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 2.0e-48 197.2 294 62.9
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 5.9e-48 195.7 140 73.6
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 2.5e-46 190.3 310 56.5
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 6.7e-44 182.2 185 68.6
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-43 181.4 185 63.2
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.1e-43 181.4 308 49.4
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.3e-42 177.9 157 62.4
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 3.7e-42 176.4 149 64.4
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 4.8e-42 176.0 218 55.0
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 1.1e-41 174.9 212 83.5
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.2e-40 171.4 160 60.0
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 3.4e-40 169.9 314 56.1
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.3e-39 167.9 146 62.3
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 8.5e-39 165.2 131 66.4
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 8.5e-39 165.2 157 64.3
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 7.9e-37 158.7 308 45.8
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 1.8e-36 157.5 152 65.1
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 3.3e-35 153.3 308 44.2
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 7.4e-35 152.1 158 66.5
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.8e-34 150.2 207 74.9
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 1.8e-33 147.5 153 57.5
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.3e-33 146.0 84 90.5
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.3e-33 146.0 84 90.5
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.3e-33 146.0 84 90.5
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 9.1e-33 145.2 160 58.8
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 2.5e-30 137.1 152 65.8
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 9.4e-30 135.2 77 90.9
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 7.9e-29 132.1 183 77.6
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.0e-27 127.5 78 84.6
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.2e-23 114.0 67 91.0
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 7.2e-22 109.0 67 88.1
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 9.4e-22 108.6 146 44.5
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 6.3e-18 95.9 61 82.0
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 5.3e-17 92.8 96 54.2
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 7.7e-16 89.0 62 79.0
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 6.5e-15 85.9 46 91.3
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 4.2e-14 83.2 178 35.4
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 7.2e-14 82.4 96 46.9
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 4.0e-12 76.6 163 60.1
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 6.8e-12 75.9 102 44.1
FvH4_1g05891 Fragaria vesca HOM05D065912 ORTHO05D196860 2.0e-08 64.3 37 86.5
HPP92_002875 Vanilla planifolia HOM05D004175 ORTHO05D004664 1.7e-07 61.2 86 43.0


User provided reference genes

Program Settings