Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G0835 Fragaria x ananassa HOM05D005798 ORTHO05D007269 1.3e-235 819.3 398 100.0
FvH4_1g25731 Fragaria vesca HOM05D005798 ORTHO05D007269 5.5e-231 803.9 398 98.0
FAN23G2651 Fragaria x ananassa HOM05D005798 ORTHO05D007269 1.6e-230 802.4 398 98.2
FAN28G0191 Fragaria x ananassa HOM05D005798 ORTHO05D007269 2.1e-230 802.0 398 97.5
RcHm_v2.0_Chr1g0343251 Rosa chinensis HOM05D005798 ORTHO05D007269 1.2e-212 743.0 398 91.0
Prupe.2G112300 Prunus persica HOM05D005798 ORTHO05D007269 1.4e-186 656.4 398 78.6
MD02G1227400 Malus domestica HOM05D005798 ORTHO05D007269 2.7e-185 652.1 398 78.1
MD07G1086000 Malus domestica HOM05D005798 ORTHO05D007269 3.5e-185 651.7 398 77.9
QL04p025438 Quercus lobata HOM05D005798 ORTHO05D007269 3.9e-168 595.1 397 72.3
CiPaw.13G020800 Carya illinoinensis HOM05D005798 ORTHO05D007269 1.6e-166 589.7 399 70.4
Atru.chr5.24 Acer truncatum HOM05D005798 ORTHO05D007269 5.8e-164 581.3 398 69.8
Atru.chr5.52 Acer truncatum HOM05D005798 ORTHO05D007269 7.6e-164 580.9 398 69.8
Ciclev10020482m.g Citrus clementina HOM05D005798 ORTHO05D007269 1.3e-163 580.1 400 70.8
Manes.05G060100 Manihot esculenta HOM05D005798 ORTHO05D007269 2.5e-162 575.9 391 70.8
Duzib128G1323 Durio zibethinus HOM05D005798 ORTHO05D007269 2.3e-160 569.3 398 68.1
Thecc.10G001400 Theobroma cacao HOM05D005798 ORTHO05D007269 4.3e-159 565.1 398 67.8
vmacro21093 Vaccinium macrocarpon HOM05D005798 ORTHO05D007269 8.2e-158 560.8 399 67.7
Cc02_g25760 Coffea canephora HOM05D005798 ORTHO05D007269 2.4e-157 559.3 389 66.8
TWI59G0898 Tripterygium wilfordii HOM05D005798 ORTHO05D007269 4.1e-157 558.5 389 67.4
Gorai.011G295600 Gossypium raimondii HOM05D005798 ORTHO05D007269 1.5e-156 556.6 399 67.7
CSS0042045 Camellia sinensis var. sinensis HOM05D005798 ORTHO05D007269 7.7e-156 554.3 397 68.0
Gohir.D10G254600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 3.8e-155 552.0 399 67.2
Gohir.A10G242600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 5.0e-155 551.6 399 66.9
Potri.001G346900 Populus trichocarpa HOM05D005798 ORTHO05D007269 1.1e-154 550.4 394 66.8
Sabra16G0226600 Salix brachista HOM05D005798 ORTHO05D007269 1.1e-154 550.4 390 66.9
CANSAT21G0894 Cannabis sativa HOM05D005798 ORTHO05D007269 7.2e-154 547.7 391 67.5
Peaxi162Scf01124g00121 Petunia axillaris HOM05D005798 ORTHO05D007269 2.0e-151 539.7 389 66.3
Phvul.005G016200 Phaseolus vulgaris HOM05D005798 ORTHO05D007269 2.5e-151 539.3 398 62.8
Lj1g0019008 Lotus japonicus HOM05D005798 ORTHO05D007269 4.3e-151 538.5 398 62.3
Glyma.04G128400 Glycine max HOM05D005798 ORTHO05D007269 2.8e-150 535.8 396 63.4
Medtr0103s0100 Medicago truncatula HOM05D005798 ORTHO05D007269 1.1e-149 533.9 400 62.8
Lalb_Chr19g0126311 Lupinus albus HOM05D005798 ORTHO05D007269 5.3e-149 531.6 398 63.3
Nitab4.5_0009219g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 6.9e-149 531.2 389 66.1
arahy.Tifrunner.gnm1.ann1.1MA0KJ Arachis hypogaea HOM05D005798 ORTHO05D007269 1.2e-148 530.4 399 62.4
arahy.Tifrunner.gnm1.ann1.6FN2NF Arachis hypogaea HOM05D005798 ORTHO05D007269 2.0e-148 529.6 399 62.2
VMungo1080G0989 Vigna mungo HOM05D005798 ORTHO05D007269 2.6e-148 529.3 398 62.1
Glyma.06G310400 Glycine max HOM05D005798 ORTHO05D007269 4.5e-148 528.5 396 62.1
Nitab4.5_0013532g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 4.5e-148 528.5 389 65.0
Nn2g10726 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.3e-147 526.9 393 63.1
Sopen01g035220 Solanum pennellii HOM05D005798 ORTHO05D007269 1.7e-147 526.6 389 64.8
Psat3g172680 Pisum sativum HOM05D005798 ORTHO05D007269 2.2e-147 526.2 390 62.8
Solyc01g088390.3 Solanum lycopersicum HOM05D005798 ORTHO05D007269 3.8e-147 525.4 389 64.3
CAN.G1480.2 Capsicum annuum HOM05D005798 ORTHO05D007269 1.9e-146 523.1 389 64.3
PGSC0003DMG400001703 Solanum tuberosum HOM05D005798 ORTHO05D007269 1.2e-145 520.4 389 64.5
PGR004G1878 Punica granatum HOM05D005798 ORTHO05D007269 3.6e-145 518.8 389 63.8
THA.LOC104817171 Tarenaya hassleriana HOM05D005798 ORTHO05D007269 6.1e-145 518.1 399 63.4
MELO3C006251.2 Cucumis melo HOM05D005798 ORTHO05D007269 7.9e-145 517.7 398 62.1
PGR004G0434 Punica granatum HOM05D005798 ORTHO05D007269 7.9e-145 517.7 389 63.5
ClCG05G002770 Citrullus lanatus HOM05D005798 ORTHO05D007269 1.0e-144 517.3 398 61.8
Hund17139 Selenicereus undatus HOM05D005798 ORTHO05D007269 2.3e-144 516.2 389 63.5
MSTRG.20650 Avicennia marina HOM05D005798 ORTHO05D007269 3.0e-144 515.8 390 64.1
CsaV3_3G010280 Cucumis sativus L. HOM05D005798 ORTHO05D007269 7.4e-143 511.1 398 61.3
Sed0012756 Sechium edule HOM05D005798 ORTHO05D007269 7.4e-143 511.1 398 61.3
Ca_03850_v3 Cicer arietinum L. HOM05D005798 ORTHO05D007269 9.7e-143 510.8 389 61.7
Migut.B01472 Erythranthe guttata HOM05D005798 ORTHO05D007269 2.8e-142 509.2 389 65.0
Sc26g0001830 Simmondsia chinensis HOM05D005798 ORTHO05D007269 4.8e-142 508.4 388 63.1
AUR62031252 Chenopodium quinoa HOM05D005798 ORTHO05D007269 1.8e-141 506.5 388 62.6
EL10Ac8g19272 Beta vulgaris HOM05D005798 ORTHO05D007269 1.2e-140 503.8 387 63.0
AUR62027448 Chenopodium quinoa HOM05D005798 ORTHO05D007269 1.2e-140 503.8 388 62.6
Eucgr.D01150 Eucalyptus grandis HOM05D005798 ORTHO05D007269 4.5e-140 501.9 399 60.7
Oeu024375.1 Olea europaea HOM05D005798 ORTHO05D007269 4.5e-140 501.9 374 63.9
Oeu024376.1 Olea europaea HOM05D005798 ORTHO05D007269 4.5e-140 501.9 374 63.9
Aa31LG1G26140 Aethionema arabicum HOM05D005798 ORTHO05D007269 2.5e-138 496.1 389 61.2
ECA234G4178 Erigeron canadensis HOM05D005798 ORTHO05D007269 5.5e-138 495.0 383 60.8
AL4G43620 Arabidopsis lyrata HOM05D005798 ORTHO05D007269 2.7e-137 492.7 394 60.9
PSO017G1219 Papaver somniferum HOM05D005798 ORTHO05D007269 3.0e-136 489.2 393 60.3
HanXRQChr16g0519531 Helianthus annuus HOM05D005798 ORTHO05D007269 3.9e-136 488.8 400 60.0
AT2G44580 Arabidopsis thaliana HOM05D005798 ORTHO05D007269 1.1e-135 487.3 394 60.4
PSO782G4885 Papaver somniferum HOM05D005798 ORTHO05D007269 2.0e-135 486.5 393 59.8
Sp4g26670 Schrenkiella parvula HOM05D005798 ORTHO05D007269 1.1e-133 480.7 391 59.8
PSO063G7295 Papaver somniferum HOM05D005798 ORTHO05D007269 7.0e-133 478.0 403 58.3
BcaB02g08835 Brassica carinata HOM05D005798 ORTHO05D007269 1.6e-132 476.9 392 58.7
CARHR139800 Cardamine hirsuta HOM05D005798 ORTHO05D007269 1.0e-131 474.2 384 60.2
Lj7C553T5 Lonicera japonica HOM05D005798 ORTHO05D007269 1.9e-130 469.9 390 60.8
Carub.0004s2713 Capsella rubella HOM05D005798 ORTHO05D007269 2.5e-130 469.5 395 60.0
MBI05_g22048_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 2.5e-130 469.5 389 58.9
BcaC02g12292 Brassica carinata HOM05D005798 ORTHO05D007269 3.2e-130 469.2 394 58.4
C04p05550 Brassica napus HOM05D005798 ORTHO05D007269 3.2e-130 469.2 394 58.4
BraA05t19450Z Brassica rapa HOM05D005798 ORTHO05D007269 3.2e-130 469.2 395 59.5
BolC4t22185H Brassica oleracea HOM05D005798 ORTHO05D007269 5.5e-130 468.4 398 58.3
A05p04740 Brassica napus HOM05D005798 ORTHO05D007269 1.2e-129 467.2 395 59.0
TPR.G30814 Trifolium pratense HOM05D005798 ORTHO05D007269 5.7e-127 458.4 345 62.0
unitig_52.g17377 Utricularia gibba HOM05D005798 ORTHO05D007269 1.4e-125 453.8 399 56.1
Ah.14g086050 Amaranthus hybridus HOM05D005798 ORTHO05D007269 3.8e-123 445.7 385 59.0
Thhalv10001723m.g Eutrema salsugineum HOM05D005798 ORTHO05D007269 6.5e-123 444.9 368 58.7
COL.COLO4_19318 Corchorus olitorius HOM05D005798 ORTHO05D007269 1.0e-120 437.6 314 65.9
SEGI_02869 Sequoiadendron giganteum HOM05D005798 ORTHO05D007269 3.4e-119 432.6 395 52.4
HPP92_011679 Vanilla planifolia HOM05D005798 ORTHO05D007269 3.7e-118 429.1 390 55.4
Actinidia33294 Actinidia chinensis HOM05D005798 ORTHO05D007269 2.3e-115 419.9 372 57.0
Zm00001eb112030 Zea mays HOM05D005798 ORTHO05D007269 8.6e-115 417.9 395 52.2
Os05g0119600 Oryza sativa ssp. japonica HOM05D005798 ORTHO05D007269 2.1e-113 413.3 379 53.0
Nn1g00612 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.4e-109 400.6 276 65.2
CDE06G2636 Ceratophyllum demersum HOM05D005798 ORTHO05D007269 5.4e-109 398.7 362 55.0
SGA_v2.0_scaffold17G08178 Striga asiatica HOM05D005798 ORTHO05D007269 2.5e-106 389.8 353 54.7
ATR0585G014 Amborella trichopoda HOM05D005798 ORTHO05D007269 2.1e-105 386.7 394 51.3
Rhsim01G0145000 Rhododendron simsii HOM05D005798 ORTHO05D007269 1.1e-101 374.4 386 50.5
Cpa.g.sc3387.1 Carica papaya HOM05D005798 ORTHO05D007269 6.6e-99 365.2 243 68.7
Dinv43575 Davidia involucrata HOM05D005798 ORTHO05D007269 1.8e-96 357.1 263 65.8
Pp3c5_22720 Physcomitrium patens HOM05D005798 ORTHO05D007269 1.3e-91 340.9 390 43.6
TAR375G0847 Trochodendron aralioides HOM05D005798 ORTHO05D007269 3.0e-91 339.7 267 62.2
AagrBONN_evm.TU.Sc2ySwM_344.2100 Anthoceros agrestis HOM05D005798 ORTHO05D007269 1.1e-82 311.2 364 44.2
GSVIVG01018417001 Vitis vinifera HOM05D005798 ORTHO05D007269 4.7e-81 305.8 192 72.9
Mapoly0001s0452 Marchantia polymorpha HOM05D005798 ORTHO05D007269 8.9e-80 301.6 399 39.6
Actinidia21608 Actinidia chinensis HOM05D005798 ORTHO05D007269 1.0e-67 261.5 160 75.0
Nn3g19112 Nelumbo nucifera HOM05D005798 ORTHO05D007269 7.3e-66 255.4 248 50.0
Lsat_1_v5_gn_4_46040 Lactuca sativa HOM05D005798 ORTHO05D007269 8.1e-65 251.9 193 60.6
Prupe.2G112500 Prunus persica HOM05D005798 ORTHO05D007269 8.1e-65 251.9 154 81.2
Nn1g07358 Nelumbo nucifera HOM05D005798 ORTHO05D007269 2.1e-60 237.3 195 60.5
Haze_02923 Corylus avellana HOM05D005798 ORTHO05D007269 6.0e-60 235.7 195 62.6
Prupe.2G112400 Prunus persica HOM05D005798 ORTHO05D007269 2.8e-57 226.9 201 59.2
Peaxi162Scf00417g00029 Petunia axillaris HOM05D005798 ORTHO05D007269 2.6e-55 220.3 233 47.6
Nn3g19416 Nelumbo nucifera HOM05D005798 ORTHO05D007269 8.4e-54 215.3 164 61.6
GSVIVG01018418001 Vitis vinifera HOM05D005798 ORTHO05D007269 5.1e-51 206.1 150 68.0
Atru.chr5.133 Acer truncatum HOM05D005798 ORTHO05D007269 7.2e-45 185.7 145 62.1
Nn1g07357 Nelumbo nucifera HOM05D005798 ORTHO05D007269 7.2e-45 185.7 135 60.7
Dinv43574 Davidia involucrata HOM05D005798 ORTHO05D007269 3.5e-44 183.3 109 75.2
CBR_g39622 Chara braunii HOM05D000017 ORTHO05D000013 2.2e-41 174.1 426 30.3
HanXRQChr12g0366931 Helianthus annuus HOM05D005798 ORTHO05D007269 1.5e-39 167.9 244 38.9
Cre16.g684155 Chlamydomonas reinhardtii HOM05D005798 ORTHO05D007269 7.7e-39 165.6 369 29.8
CAN.G74.39 Capsicum annuum HOM05D005798 ORTHO05D007269 1.7e-38 164.5 136 62.5
CAN.G195.32 Capsicum annuum HOM05D005798 ORTHO05D007269 2.9e-38 163.7 166 49.4
Atru.chr5.134 Acer truncatum HOM05D005798 ORTHO05D007269 2.1e-36 157.5 93 74.2
PRCOL_00005399 Prasinoderma coloniale HOM05D005798 ORTHO05D007269 4.1e-32 143.3 370 27.8
Nn3g19415 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.1e-29 135.2 92 71.7
CAN.G74.38 Capsicum annuum HOM05D005798 ORTHO05D007269 2.7e-28 130.6 93 71.0
MCO12G177 Micromonas commoda HOM05D005798 ORTHO05D007269 2.2e-22 110.9 457 24.5
EL10Ac6g13432 Beta vulgaris HOM05D005798 ORTHO05D007269 2.1e-20 104.4 85 55.3
HanXRQChr07g0198081 Helianthus annuus HOM05D005798 ORTHO05D007269 3.0e-19 100.5 221 33.0
HPP92_011700 Vanilla planifolia HOM05D005798 ORTHO05D007269 2.6e-18 97.4 226 30.1
TAR375G0441 Trochodendron aralioides HOM05D005798 ORTHO05D007269 3.8e-14 83.6 54 70.4
MBI14_g08084_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 2.3e-11 74.3 85 45.9
HanXRQChr11g0349311 Helianthus annuus HOM05D000428 ORTHO05D011602 7.5e-10 69.3 105 42.9
CAN.G195.33 Capsicum annuum HOM05D005798 ORTHO05D007269 1.6e-07 61.6 72 47.2


User provided reference genes

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