Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G0769 Fragaria x ananassa HOM05D003426 ORTHO05D003816 3.3e-293 1011.1 573 100.0
FAN23G3106 Fragaria x ananassa HOM05D003426 ORTHO05D003816 3.1e-227 792.0 507 89.9
FvH4_1g00800 Fragaria vesca HOM05D003426 ORTHO05D003816 1.2e-223 780.0 495 93.1
FAN28G0527 Fragaria x ananassa HOM05D003426 ORTHO05D003816 9.2e-219 763.8 596 77.7
RcHm_v2.0_Chr2g0085511 Rosa chinensis HOM05D003426 ORTHO05D003816 2.2e-188 662.9 666 66.7
MD15G1151400 Malus domestica HOM05D003426 ORTHO05D003816 6.9e-57 226.1 446 38.6
MD02G1006400 Malus domestica HOM05D003426 ORTHO05D003816 2.9e-55 220.7 490 40.0
MD17G1259500 Malus domestica HOM05D003426 ORTHO05D003816 8.2e-42 176.0 488 32.0
Cfa020810 Carpinus fangiana HOM05D003426 ORTHO05D003816 1.8e-41 174.9 466 34.5
Prupe.7G264500 Prunus persica HOM05D003426 ORTHO05D003816 1.0e-39 169.1 398 36.2
CiPaw.15G166800 Carya illinoinensis HOM05D003426 ORTHO05D003816 1.8e-36 158.3 418 38.0
Haze_19169 Corylus avellana HOM05D003426 ORTHO05D003816 3.3e-35 154.1 518 29.9
Potri.006G182601 Populus trichocarpa HOM05D003426 ORTHO05D003816 1.5e-32 145.2 428 32.9
Dinv43256 Davidia involucrata HOM05D003426 ORTHO05D003816 6.5e-31 139.8 432 33.8
Cpa.g.sc46.169 Carica papaya HOM05D003426 ORTHO05D003816 8.5e-31 139.4 425 32.7
Thecc.09G028500 Theobroma cacao HOM05D003426 ORTHO05D003816 1.1e-30 139.0 437 32.5
TWI34G0373 Tripterygium wilfordii HOM05D003426 ORTHO05D003816 1.4e-30 138.7 449 33.0
COL.COLO4_18823 Corchorus olitorius HOM05D003426 ORTHO05D003816 4.6e-29 133.7 438 31.5
Manes.06G035400 Manihot esculenta HOM05D003426 ORTHO05D003816 6.1e-29 133.3 456 34.2
Cc06_g14810 Coffea canephora HOM05D003426 ORTHO05D003816 1.5e-27 128.6 443 30.5
CiPaw.16G108300 Carya illinoinensis HOM05D003426 ORTHO05D003816 1.3e-26 125.6 491 30.1
Atru.chr7.23 Acer truncatum HOM05D003426 ORTHO05D003816 3.7e-26 124.0 507 33.3
Hma1.2p1_0028F.1_g017630 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 9.1e-25 119.4 417 28.8
Duzib168G0934 Durio zibethinus HOM05D003426 ORTHO05D003816 1.5e-24 118.6 476 30.3
AUR62025323 Chenopodium quinoa HOM05D003426 ORTHO05D003816 1.0e-23 115.9 483 27.7
Ah.09g228830 Amaranthus hybridus HOM05D006517 ORTHO05D007886 2.2e-23 114.8 363 32.2
Dinv42844 Davidia involucrata HOM05D003426 ORTHO05D003816 2.2e-23 114.8 250 36.8
CANSAT11G1136 Cannabis sativa HOM05D003426 ORTHO05D003816 5.0e-23 113.6 415 30.6
Actinidia23556 Actinidia chinensis HOM05D003426 ORTHO05D003816 7.2e-22 109.8 432 32.2
Eucgr.C00251 Eucalyptus grandis HOM05D003426 ORTHO05D003816 7.2e-22 109.8 474 28.9
AUR62028339 Chenopodium quinoa HOM05D003426 ORTHO05D003816 3.6e-21 107.5 479 26.7
TAR626G1511 Trochodendron aralioides HOM05D003426 ORTHO05D003816 3.6e-21 107.5 420 29.0
MSTRG.26266 Avicennia marina HOM05D003426 ORTHO05D003816 4.7e-21 107.1 361 27.4
EL10Ac8g18943 Beta vulgaris HOM05D003426 ORTHO05D003816 4.7e-21 107.1 426 29.6
Gohir.D07G031500 Gossypium hirsutum HOM05D003426 ORTHO05D003816 4.7e-21 107.1 420 29.3
Gorai.001G032900 Gossypium raimondii HOM05D003426 ORTHO05D003816 6.1e-21 106.7 420 29.0
vmacro16795 Vaccinium macrocarpon HOM05D003426 ORTHO05D003816 1.8e-20 105.1 353 33.4
Nn2g12424 Nelumbo nucifera HOM05D003426 ORTHO05D003816 3.0e-20 104.4 452 30.3
Oeu026460.1 Olea europaea HOM05D003426 ORTHO05D003816 3.9e-20 104.0 370 27.8
Gohir.A07G027500 Gossypium hirsutum HOM05D003426 ORTHO05D003816 6.7e-20 103.2 420 29.0
Sabra06G0139100 Salix brachista HOM05D003426 ORTHO05D003816 6.7e-20 103.2 292 33.6
Hund08921 Selenicereus undatus HOM05D003426 ORTHO05D003816 6.7e-20 103.2 464 31.5
Peaxi162Scf00401g00417 Petunia axillaris HOM05D003426 ORTHO05D003816 3.3e-19 100.9 448 28.6
Rhsim01G0028100 Rhododendron simsii HOM05D003426 ORTHO05D003816 2.8e-18 97.8 459 30.9
Ca_21135_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 8.2e-18 96.3 380 29.5
Ca_21137_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 8.2e-18 96.3 380 29.5
CSS0024837 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D003816 1.1e-17 95.9 223 35.0
Sed0021282 Sechium edule HOM05D003426 ORTHO05D003816 2.4e-17 94.7 417 28.8
Hma1.2p1_2680F.1_g326790 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 4.1e-17 94.0 215 36.7
Lj9C718T11 Lonicera japonica HOM05D003426 ORTHO05D003816 4.1e-17 94.0 446 26.9
PGSC0003DMG400011187 Solanum tuberosum HOM05D003426 ORTHO05D003816 5.3e-17 93.6 481 26.0
CAN.G160.49 Capsicum annuum HOM05D003426 ORTHO05D003816 9.1e-17 92.8 418 28.9
PGR142G3879 Punica granatum HOM05D003426 ORTHO05D003816 1.5e-16 92.0 471 28.2
Manes.14G144800 Manihot esculenta HOM05D003426 ORTHO05D003816 2.0e-16 91.7 485 27.6
TAR636G1172 Trochodendron aralioides HOM05D003426 ORTHO05D003816 5.9e-16 90.1 362 29.6
HanXRQChr05g0144001 Helianthus annuus HOM05D003426 ORTHO05D003816 7.7e-16 89.7 385 27.5
Phvul.003G155200 Phaseolus vulgaris HOM05D003426 ORTHO05D003816 1.3e-15 89.0 461 25.8
Lsat_1_v5_gn_8_63641 Lactuca sativa HOM05D003426 ORTHO05D003816 1.1e-14 85.9 382 28.3
Oeu021305.2 Olea europaea HOM05D003426 ORTHO05D003816 1.1e-14 85.9 230 32.2
Sopen07g001810 Solanum pennellii HOM05D003426 ORTHO05D003816 3.2e-14 84.3 486 26.3
Nitab4.5_0001571g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 4.2e-14 84.0 292 29.1
Actinidia38667 Actinidia chinensis HOM05D003426 ORTHO05D003816 7.2e-14 83.2 361 31.6
Glyma.02G205001 Glycine max HOM05D003426 ORTHO05D003816 1.2e-13 82.4 428 25.0
Nn8g39953 Nelumbo nucifera HOM05D003426 ORTHO05D003816 1.2e-13 82.4 439 25.1
SalBow1G0569 Salvia bowleyana HOM05D003426 ORTHO05D003816 1.2e-13 82.4 391 28.4
Solyc07g005700.3 Solanum lycopersicum HOM05D003426 ORTHO05D003816 1.2e-13 82.4 486 26.5
vmacro06066 Vaccinium macrocarpon HOM05D003426 ORTHO05D003816 4.7e-13 80.5 211 31.8
MSTRG.6152 Avicennia marina HOM05D003426 ORTHO05D003816 6.1e-13 80.1 419 24.6
CiPaw.16G108200 Carya illinoinensis HOM05D003426 ORTHO05D003816 1.0e-12 79.3 269 33.1
Lj4g0000658 Lotus japonicus HOM05D003426 ORTHO05D003816 1.0e-12 79.3 408 27.9
PSO210G2240 Papaver somniferum HOM05D003426 ORTHO05D003816 1.4e-12 79.0 387 25.1
Nitab4.5_0005869g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 1.8e-12 78.6 238 32.8
PSO210G1729 Papaver somniferum HOM05D003426 ORTHO05D003816 6.7e-12 76.6 346 26.6
arahy.Tifrunner.gnm1.ann1.N5DK6E Arachis hypogaea HOM05D003426 ORTHO05D003816 2.0e-11 75.1 223 30.0
Psat4g009680 Pisum sativum HOM05D003426 ORTHO05D003816 2.6e-11 74.7 296 28.4
Lalb_Chr12g0198761 Lupinus albus HOM05D003426 ORTHO05D003816 3.3e-11 74.3 174 33.3
Psat4g009920 Pisum sativum HOM05D003426 ORTHO05D003816 4.4e-11 73.9 417 28.8
Aqoxy7G03377 Aquilegia oxysepala HOM05D003426 ORTHO05D003816 7.4e-11 73.2 430 26.0
Glyma.17G184200 Glycine max HOM05D003426 ORTHO05D003816 9.7e-11 72.8 433 27.9
Glyma.17G073000 Glycine max HOM05D003426 ORTHO05D003816 1.7e-10 72.0 436 24.8
ClCG02G014420 Citrullus lanatus HOM05D003426 ORTHO05D003816 2.2e-10 71.6 218 30.7
MBI15_g18232_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 2.2e-10 71.6 435 25.5
QL02p093542 Quercus lobata HOM05D001418 ORTHO05D002038 2.8e-10 71.2 112 36.6
TAR625G0621 Trochodendron aralioides HOM05D003426 ORTHO05D003816 6.3e-10 70.1 239 35.1
Glyma.17G072650 Glycine max HOM05D003426 ORTHO05D003816 8.2e-10 69.7 284 26.8
Glyma.17G072900 Glycine max HOM05D003426 ORTHO05D003816 8.2e-10 69.7 434 23.7
Medtr4g130690 Medicago truncatula HOM05D003426 ORTHO05D003816 8.2e-10 69.7 291 28.9
THA.LOC104803917 Tarenaya hassleriana HOM05D003426 ORTHO05D003816 1.1e-09 69.3 513 23.8
arahy.Tifrunner.gnm1.ann1.H6N2T4 Arachis hypogaea HOM05D003426 ORTHO05D003816 1.4e-09 68.9 232 28.0
Actinidia38316 Actinidia chinensis HOM05D003426 ORTHO05D003816 4.1e-09 67.4 415 28.0
MELO3C004128.2 Cucumis melo HOM05D003426 ORTHO05D003816 4.1e-09 67.4 251 30.3
Lj7P460T26 Lonicera japonica HOM05D003426 ORTHO05D003816 7.0e-09 66.6 219 30.1
MBI14_g30955_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 7.0e-09 66.6 419 28.6
Sed0007563 Sechium edule HOM05D003426 ORTHO05D003816 7.0e-09 66.6 194 28.9
CsaV3_2G007580 Cucumis sativus L. HOM05D003426 ORTHO05D003816 1.2e-08 65.9 230 29.1
Rhsim03G0257700 Rhododendron simsii HOM05D003426 ORTHO05D003816 1.6e-08 65.5 300 26.0
Psat4g010040 Pisum sativum HOM05D003426 ORTHO05D003816 2.0e-08 65.1 191 31.9
PSO111G0039 Papaver somniferum HOM05D003426 ORTHO05D003816 3.5e-08 64.3 420 28.6
PSO561G0041 Papaver somniferum HOM05D003426 ORTHO05D003816 3.5e-08 64.3 423 29.1
DCAR_019401 Daucus carota HOM05D003426 ORTHO05D003816 4.5e-08 63.9 262 27.1
Dinv08190 Davidia involucrata HOM05D003426 ORTHO05D003816 7.7e-08 63.2 358 25.4
ECA236G2514 Erigeron canadensis HOM05D003426 ORTHO05D003816 7.7e-08 63.2 403 24.1
Nitab4.5_0004586g0030 Nicotiana tabacum HOM05D000650 ORTHO05D007302 2.9e-07 61.2 188 26.6
Cpa.g.sc20.26 Carica papaya HOM05D000650 ORTHO05D000735 5.0e-07 60.5 178 29.8
Phvul.002G214600 Phaseolus vulgaris HOM05D000650 ORTHO05D007302 5.0e-07 60.5 238 25.2
Psat6g228520 Pisum sativum HOM05D003426 ORTHO05D003816 5.0e-07 60.5 296 29.4
Sc14g0000930 Simmondsia chinensis HOM05D003426 ORTHO05D003816 5.0e-07 60.5 385 26.0
Migut.J01365 Erythranthe guttata HOM05D003426 ORTHO05D003816 6.5e-07 60.1 339 27.7
Lj4g0006994 Lotus japonicus HOM05D003426 ORTHO05D003816 8.5e-07 59.7 363 25.9
Medtr4g129690 Medicago truncatula HOM05D003426 ORTHO05D003816 1.5e-06 58.9 270 23.7
RcHm_v2.0_Chr6g0270151 Rosa chinensis HOM05D000650 ORTHO05D007302 1.5e-06 58.9 184 28.8
Duzib248G1171 Durio zibethinus HOM05D000650 ORTHO05D007302 1.9e-06 58.5 195 29.7
PGSC0003DMG400037110 Solanum tuberosum HOM05D003426 ORTHO05D003816 1.9e-06 58.5 227 27.3
Prupe.8G073000 Prunus persica HOM05D000650 ORTHO05D007302 2.5e-06 58.2 181 28.2
PGSC0003DMG400036381 Solanum tuberosum HOM05D003426 ORTHO05D003816 2.5e-06 58.2 351 25.6
VMungo1215G0444 Vigna mungo HOM05D003426 ORTHO05D003816 2.5e-06 58.2 211 26.1
Actinidia10526 Actinidia chinensis HOM05D003426 ORTHO05D003816 3.2e-06 57.8 135 32.6
Medtr3g045840 Medicago truncatula HOM05D003426 ORTHO05D003816 3.2e-06 57.8 190 31.1
Nitab4.5_0000123g0610 Nicotiana tabacum HOM05D003426 ORTHO05D007302 3.2e-06 57.8 198 28.8
MELO3C010212.2 Cucumis melo HOM05D003426 ORTHO05D003816 4.2e-06 57.4 226 27.4
Nitab4.5_0014595g0010 Nicotiana tabacum HOM05D000650 ORTHO05D007302 4.2e-06 57.4 198 25.8
Prupe.8G072900 Prunus persica HOM05D000650 ORTHO05D007302 5.5e-06 57.0 176 30.1
Rhsim02G0212600 Rhododendron simsii HOM05D003426 ORTHO05D003816 5.5e-06 57.0 403 25.3
PGSC0003DMG400040160 Solanum tuberosum HOM05D003426 ORTHO05D003816 5.5e-06 57.0 354 29.9
GSVIVG01000328001 Vitis vinifera HOM05D000650 ORTHO05D007302 7.2e-06 56.6 177 27.1


User provided reference genes

Program Settings