Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.0e-105 385.2 194 100.0
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.0e-105 385.2 194 100.0
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 6.7e-105 384.0 194 99.5
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 4.8e-103 377.9 202 96.0
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.4e-102 376.3 206 94.2
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 1.8e-102 375.9 194 96.9
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 1.5e-93 346.3 194 90.2
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 5.9e-93 344.4 175 98.9
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 1.7e-92 342.8 194 89.2
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 4.6e-90 334.7 194 86.6
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 5.1e-89 331.3 197 83.8
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 2.5e-88 328.9 197 83.2
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 2.8e-87 325.5 194 84.5
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 4.8e-87 324.7 194 82.0
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 6.3e-87 324.3 194 83.0
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 8.2e-87 323.9 194 82.5
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 1.8e-86 322.8 194 82.0
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 2.4e-86 322.4 194 82.0
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 3.1e-86 322.0 194 81.4
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 6.9e-86 320.9 194 80.9
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 2.0e-85 319.3 194 82.0
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 7.7e-85 317.4 192 82.8
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 3.8e-84 315.1 198 79.3
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 6.5e-84 314.3 195 82.1
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 8.5e-84 313.9 194 81.4
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 1.1e-83 313.5 194 80.9
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 1.4e-83 313.2 194 80.9
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 1.9e-83 312.8 194 82.0
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 1.9e-83 312.8 194 80.9
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 5.5e-83 311.2 195 79.5
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 9.4e-83 310.5 195 79.0
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 1.2e-82 310.1 192 80.7
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.2e-82 310.1 195 80.5
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 1.2e-82 310.1 194 80.4
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 1.6e-82 309.7 195 80.5
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 1.6e-82 309.7 194 79.9
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.1e-82 309.3 194 78.4
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 3.6e-82 308.5 194 79.4
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 3.6e-82 308.5 194 77.3
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.6e-82 308.5 194 79.9
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 4.7e-82 308.1 198 77.3
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 6.1e-82 307.8 194 79.4
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 6.1e-82 307.8 194 78.9
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 7.9e-82 307.4 194 79.4
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 7.9e-82 307.4 195 79.5
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 1.4e-81 306.6 194 77.8
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.8e-81 306.2 198 78.3
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 2.3e-81 305.8 193 80.3
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 2.3e-81 305.8 193 78.2
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 2.3e-81 305.8 194 78.9
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 3.0e-81 305.4 198 79.8
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 3.9e-81 305.1 197 77.2
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 3.9e-81 305.1 195 78.5
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 3.9e-81 305.1 194 77.8
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 3.9e-81 305.1 201 75.1
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 3.9e-81 305.1 201 76.6
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 3.9e-81 305.1 199 74.9
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 6.7e-81 304.3 194 77.3
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 8.8e-81 303.9 201 76.1
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 8.8e-81 303.9 203 76.4
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 8.8e-81 303.9 194 78.4
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 1.1e-80 303.5 194 77.3
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 1.1e-80 303.5 195 76.9
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.1e-80 303.5 194 78.4
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.1e-80 303.5 203 74.4
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 1.5e-80 303.1 194 76.3
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 2.0e-80 302.8 196 77.6
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 2.0e-80 302.8 194 76.8
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 4.4e-80 301.6 196 76.5
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 5.7e-80 301.2 202 74.3
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 7.4e-80 300.8 202 73.8
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 9.7e-80 300.4 197 75.6
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 9.7e-80 300.4 194 77.8
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 9.7e-80 300.4 210 72.9
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 1.3e-79 300.1 199 74.9
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 2.8e-79 298.9 197 75.1
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 2.8e-79 298.9 201 74.6
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 2.8e-79 298.9 201 74.1
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.7e-79 298.5 198 73.7
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 3.7e-79 298.5 196 76.0
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 3.7e-79 298.5 197 75.6
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 4.8e-79 298.1 197 74.6
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 8.2e-79 297.4 201 73.6
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 8.2e-79 297.4 200 75.0
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 1.1e-78 297.0 197 74.6
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 1.1e-78 297.0 197 74.6
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 3.1e-78 295.4 197 74.1
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 3.1e-78 295.4 199 73.9
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 3.1e-78 295.4 194 75.3
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 3.1e-78 295.4 196 75.5
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 4.1e-78 295.0 194 75.3
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 9.1e-78 293.9 195 76.9
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 1.2e-77 293.5 175 84.0
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.2e-77 293.5 201 72.1
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.2e-77 293.5 201 72.1
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 2.6e-77 292.4 204 73.0
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 5.9e-77 291.2 197 75.1
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 5.9e-77 291.2 197 75.1
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 5.9e-77 291.2 196 75.5
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 2.9e-76 288.9 200 74.0
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 5.0e-76 288.1 217 68.2
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 6.5e-76 287.7 186 77.4
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 1.1e-75 287.0 198 74.7
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 1.1e-75 287.0 194 75.3
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 1.1e-75 287.0 194 76.8
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 1.5e-75 286.6 197 72.6
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 1.5e-75 286.6 192 75.5
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 9.4e-75 283.9 198 73.2
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 9.4e-75 283.9 194 74.2
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 1.2e-74 283.5 201 73.1
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 1.6e-74 283.1 201 73.1
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 1.0e-73 280.4 198 73.7
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 1.8e-73 279.6 196 69.9
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.8e-73 279.6 176 80.1
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 1.8e-73 279.6 202 72.3
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 2.3e-73 279.3 243 62.6
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 3.0e-73 278.9 192 71.4
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 4.0e-73 278.5 197 71.6
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 4.0e-73 278.5 223 65.9
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 4.0e-73 278.5 194 73.2
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 6.7e-73 277.7 198 73.7
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 3.3e-72 275.4 198 72.2
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 1.3e-71 273.5 211 69.2
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 2.8e-71 272.3 180 76.7
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 6.3e-71 271.2 193 68.9
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 1.1e-70 270.4 204 71.6
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 2.0e-69 266.2 188 70.7
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 2.7e-69 265.8 189 70.9
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 4.5e-69 265.0 193 67.9
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 3.8e-68 261.9 201 68.7
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 1.1e-67 260.4 215 65.1
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 3.2e-67 258.8 213 64.3
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 5.5e-67 258.1 183 68.3
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.6e-66 256.5 194 68.6
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 3.0e-65 252.3 233 60.9
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 4.0e-65 251.9 185 66.5
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 9.8e-64 247.3 181 68.0
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 1.8e-62 243.0 190 66.8
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 5.4e-62 241.5 199 62.3
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 5.4e-62 241.5 181 67.4
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 8.5e-60 234.2 194 64.4
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 7.2e-59 231.1 179 68.7
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 2.0e-56 223.0 205 61.0
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 4.3e-51 205.3 154 68.2
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.4e-46 190.3 116 81.0
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 9.2e-46 187.6 177 57.1
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 1.2e-45 187.2 129 75.2
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 6.4e-39 164.9 99 84.8
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 8.3e-39 164.5 99 86.9
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.9e-38 163.3 106 79.2
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 5.4e-38 161.8 188 53.7
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 2.3e-36 156.4 97 72.2
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 7.1e-30 134.8 79 77.2
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 6.6e-28 128.3 71 77.5
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 8.6e-28 127.9 195 45.6
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 1.9e-27 126.7 95 70.5
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.5e-27 126.3 70 90.0
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.5e-24 117.1 101 64.4
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 5.8e-24 115.2 190 38.9
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 7.1e-22 108.2 192 37.0
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 4.6e-21 105.5 100 62.0
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 7.3e-19 98.2 192 40.6
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 1.6e-18 97.1 71 63.4
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 5.2e-17 92.0 62 67.7
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 8.9e-17 91.3 65 67.7
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 1.2e-16 90.9 67 61.2
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 1.5e-16 90.5 192 39.1
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 2.7e-13 79.7 165 36.4
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.3e-12 77.4 51 76.5
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.3e-12 76.6 53 73.6
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 1.1e-11 74.3 61 60.7
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 2.6e-08 63.2 70 51.4


User provided reference genes

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