Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 4.4e-92 341.3 171 100.0
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.2e-88 328.9 167 99.4
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 5.5e-87 324.3 167 98.2
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 2.1e-86 322.4 167 97.6
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.0e-77 293.5 169 89.3
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 7.0e-74 280.8 169 85.8
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 3.6e-62 241.9 168 75.6
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 9.8e-60 233.8 174 72.4
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 1.9e-58 229.6 165 71.5
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 4.6e-57 224.9 174 69.0
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 3.9e-56 221.9 172 68.6
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.5e-55 219.9 167 70.1
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 2.5e-55 219.2 170 68.8
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 2.5e-55 219.2 170 68.8
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 4.3e-55 218.4 173 68.2
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 4.3e-55 218.4 170 68.2
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 5.6e-55 218.0 181 63.5
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 7.3e-55 217.6 174 66.1
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 2.1e-54 216.1 170 67.6
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 2.1e-54 216.1 172 66.9
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 2.8e-54 215.7 174 69.0
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 2.8e-54 215.7 169 68.0
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.6e-54 215.3 174 68.4
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 4.7e-54 214.9 174 65.5
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 4.7e-54 214.9 172 68.6
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 4.7e-54 214.9 176 67.0
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 1.8e-53 213.0 188 63.8
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 1.8e-53 213.0 176 68.2
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 2.3e-53 212.6 169 68.0
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 2.3e-53 212.6 187 63.6
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 3.1e-53 212.2 182 63.2
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 5.2e-53 211.5 173 68.2
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 5.2e-53 211.5 178 65.2
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 5.2e-53 211.5 177 65.0
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 1.2e-52 210.3 179 65.4
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.2e-52 210.3 142 76.8
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 2.0e-52 209.5 179 65.4
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 5.8e-52 208.0 184 63.6
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 7.6e-52 207.6 175 63.4
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 1.3e-51 206.8 179 65.4
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 1.7e-51 206.5 180 63.9
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 2.9e-51 205.7 176 65.3
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 2.9e-51 205.7 168 64.9
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 2.9e-51 205.7 186 61.8
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 2.9e-51 205.7 186 61.8
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 2.9e-51 205.7 176 64.2
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 3.7e-51 205.3 188 60.6
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 3.7e-51 205.3 200 59.5
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 4.9e-51 204.9 182 62.1
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 6.4e-51 204.5 167 65.3
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 6.4e-51 204.5 169 63.3
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.1e-50 203.8 173 64.2
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 1.1e-50 203.8 177 63.8
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 1.1e-50 203.8 180 63.3
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 1.4e-50 203.4 178 64.0
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 1.4e-50 203.4 177 63.3
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 1.4e-50 203.4 177 62.1
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 1.9e-50 203.0 177 63.3
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 2.4e-50 202.6 169 64.5
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 5.4e-50 201.4 177 64.4
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 7.1e-50 201.1 180 61.7
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 7.1e-50 201.1 135 76.3
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 9.2e-50 200.7 180 62.8
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 9.2e-50 200.7 178 65.2
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 9.2e-50 200.7 177 63.8
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 1.2e-49 200.3 180 62.2
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 1.2e-49 200.3 178 63.5
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 1.6e-49 199.9 143 72.7
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.6e-49 199.9 169 62.7
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 2.7e-49 199.1 140 75.0
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 2.7e-49 199.1 169 62.7
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 3.5e-49 198.7 181 61.9
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 3.5e-49 198.7 181 61.9
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 3.5e-49 198.7 181 61.9
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 4.6e-49 198.4 182 62.6
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.6e-49 198.4 176 62.5
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 6.0e-49 198.0 176 62.5
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 1.7e-48 196.4 187 60.4
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 1.7e-48 196.4 176 63.6
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 2.3e-48 196.1 179 60.9
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 2.3e-48 196.1 180 60.6
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 2.3e-48 196.1 179 60.9
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 3.9e-48 195.3 171 63.7
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 5.1e-48 194.9 172 65.1
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 5.1e-48 194.9 172 65.1
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 6.6e-48 194.5 186 58.6
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 8.6e-48 194.1 173 60.1
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 8.6e-48 194.1 174 62.6
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 1.5e-47 193.4 180 61.7
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 1.5e-47 193.4 201 58.7
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 1.5e-47 193.4 137 71.5
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 1.9e-47 193.0 180 61.7
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 1.9e-47 193.0 190 56.8
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.9e-47 193.0 179 58.7
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.9e-47 193.0 179 58.7
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 1.9e-47 193.0 174 63.2
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 2.5e-47 192.6 146 71.2
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 3.3e-47 192.2 202 55.4
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 4.3e-47 191.8 170 60.0
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 1.2e-46 190.3 192 55.7
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 6.2e-46 188.0 176 59.7
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 1.1e-45 187.2 167 62.3
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 4.0e-45 185.3 168 60.7
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 1.2e-44 183.7 191 56.5
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 2.0e-44 183.0 189 57.1
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 7.6e-44 181.0 166 56.6
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 9.9e-44 180.6 193 54.4
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 2.2e-43 179.5 151 64.2
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 6.4e-43 177.9 167 59.3
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 1.4e-42 176.8 188 55.3
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 3.2e-42 175.6 170 57.6
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.2e-42 175.3 171 57.3
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 6.0e-41 171.4 109 74.3
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 1.5e-39 166.8 150 64.0
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 2.4e-37 159.5 159 55.3
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 6.9e-37 157.9 188 47.9
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 3.8e-35 152.1 88 84.1
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 1.6e-33 146.7 134 56.0
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 2.7e-33 146.0 123 61.8
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 2.3e-32 142.9 144 58.3
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 4.3e-31 138.7 140 57.9
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.1e-30 136.3 138 58.0
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.2e-28 130.6 103 63.1
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 9.9e-28 127.5 101 63.4
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 1.3e-27 127.1 95 69.5
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 1.7e-27 126.7 105 63.8
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 2.2e-27 126.3 101 62.4
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 4.9e-27 125.2 102 62.7
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 7.1e-26 121.3 84 70.2
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 9.3e-26 120.9 103 59.2
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 9.3e-26 120.9 109 56.0
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.3e-24 117.1 101 56.4
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 3.0e-24 115.9 102 57.8
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 2.1e-22 109.8 122 53.3
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 3.7e-22 109.0 108 50.0
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.4e-21 107.1 165 43.6
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.2e-20 104.0 102 51.0
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.5e-20 103.6 109 52.3
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 1.5e-20 103.6 112 51.8
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 1.0e-19 100.9 101 53.5
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 1.7e-19 100.1 91 52.7
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 4.9e-19 98.6 99 52.5
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.1e-18 97.4 99 58.6
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 3.2e-18 95.9 69 66.7
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 7.9e-17 91.3 64 73.4
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.9e-16 89.0 67 68.7
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 3.9e-16 89.0 137 46.7
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 8.7e-16 87.8 96 43.8
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 1.5e-15 87.0 126 40.5
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 3.7e-14 82.4 104 46.2
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 4.8e-14 82.0 89 50.6
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 1.7e-11 73.6 131 34.4


User provided reference genes

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