Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G0474 Fragaria x ananassa HOM05D003632 ORTHO05D017240 7.8e-139 497.7 364 100.0
FAN28G1390 Fragaria x ananassa HOM05D003632 ORTHO05D017240 3.1e-103 379.4 205 94.1
FvH4_7g03800 Fragaria vesca HOM05D003632 ORTHO05D005497 3.3e-65 253.1 222 66.7
FAN03G3001 Fragaria x ananassa HOM05D003632 ORTHO05D005497 3.3e-65 253.1 222 66.7
FvH4_1g30291 Fragaria vesca HOM05D003632 ORTHO05D005497 9.7e-65 251.5 222 66.2
FAN19G1728 Fragaria x ananassa HOM05D003632 ORTHO05D005497 9.7e-65 251.5 222 66.2
FAN23G1588 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.3e-64 251.1 222 66.2
RcHm_v2.0_Chr3g0491051 Rosa chinensis HOM05D003632 ORTHO05D005497 3.7e-64 249.6 222 65.3
FAN28G2113 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.1e-63 248.1 222 65.3
FAN10G0294 Fragaria x ananassa HOM05D003632 ORTHO05D005497 2.0e-62 243.8 224 65.2
FAN06G1370 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.7e-61 240.7 211 65.9
FAN28G0698 Fragaria x ananassa HOM05D003632 ORTHO05D017240 2.9e-61 240.0 152 85.5
FAN28G2388 Fragaria x ananassa HOM05D003632 ORTHO05D017240 9.4e-60 235.0 278 56.5
MD00G1159400 Malus domestica HOM05D003632 ORTHO05D005497 1.8e-58 230.7 222 60.8
Prupe.7G271900 Prunus persica HOM05D003632 ORTHO05D005497 3.9e-58 229.6 222 60.8
FAN26G0913 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.5e-57 227.6 231 60.6
MD00G1204700 Malus domestica HOM05D003632 ORTHO05D005497 2.0e-57 227.3 222 60.4
GSVIVG01013468001 Vitis vinifera HOM05D003632 ORTHO05D005497 2.8e-56 223.4 222 59.5
CSS0037547 Camellia sinensis var. sinensis HOM05D003632 ORTHO05D005497 2.4e-55 220.3 222 57.7
COL.COLO4_04620 Corchorus olitorius HOM05D003632 ORTHO05D005497 2.4e-55 220.3 222 58.6
FAN10G0430 Fragaria x ananassa HOM05D003632 ORTHO05D005497 3.1e-55 219.9 178 70.8
CANSAT25G0240 Cannabis sativa HOM05D003632 ORTHO05D005497 1.2e-54 218.0 222 58.6
Dinv03487 Davidia involucrata HOM05D003632 ORTHO05D005497 1.2e-54 218.0 222 56.8
Gohir.A01G101300 Gossypium hirsutum HOM05D003632 ORTHO05D005497 1.6e-54 217.6 222 57.7
Gohir.D01G086200 Gossypium hirsutum HOM05D003632 ORTHO05D005497 1.6e-54 217.6 222 57.7
QL02p016456 Quercus lobata HOM05D003632 ORTHO05D005497 2.0e-54 217.2 222 57.2
FAN06G1218 Fragaria x ananassa HOM05D003632 ORTHO05D005497 2.6e-54 216.9 172 70.9
CiPaw.08G079400 Carya illinoinensis HOM05D003632 ORTHO05D005497 3.5e-54 216.5 222 57.2
TAR381G0543 Trochodendron aralioides HOM05D003632 ORTHO05D005497 3.5e-54 216.5 222 58.1
Medtr5g007380 Medicago truncatula HOM05D003632 ORTHO05D005497 4.5e-54 216.1 222 55.9
Potri.014G149200 Populus trichocarpa HOM05D003632 ORTHO05D005497 4.5e-54 216.1 222 56.8
CANSAT01G2380 Cannabis sativa HOM05D003632 ORTHO05D005497 5.9e-54 215.7 222 58.1
Gorai.002G111600 Gossypium raimondii HOM05D003632 ORTHO05D005497 5.9e-54 215.7 222 57.2
LjContig00222g0019593 Lotus japonicus HOM05D003632 ORTHO05D005497 5.9e-54 215.7 222 55.9
TPR.G38003 Trifolium pratense HOM05D003632 ORTHO05D005497 7.7e-54 215.3 222 55.9
Cfa014172 Carpinus fangiana HOM05D003632 ORTHO05D005497 1.3e-53 214.5 222 56.3
Lalb_Chr09g0320141 Lupinus albus HOM05D003632 ORTHO05D005497 1.7e-53 214.2 222 55.0
arahy.Tifrunner.gnm1.ann1.LR79EL Arachis hypogaea HOM05D003632 ORTHO05D005497 3.8e-53 213.0 222 54.5
MELO3C008771.2 Cucumis melo HOM05D003632 ORTHO05D005497 5.0e-53 212.6 222 56.3
CsaV3_2G009400 Cucumis sativus L. HOM05D003632 ORTHO05D005497 5.0e-53 212.6 222 56.8
Potri.002G235700 Populus trichocarpa HOM05D003632 ORTHO05D005497 5.0e-53 212.6 222 55.9
arahy.Tifrunner.gnm1.ann1.WPQ8T0 Arachis hypogaea HOM05D003632 ORTHO05D005497 6.5e-53 212.2 222 54.5
Thecc.08G097100 Theobroma cacao HOM05D003632 ORTHO05D005497 8.5e-53 211.8 222 57.2
Duzib093G0207 Durio zibethinus HOM05D003632 ORTHO05D005497 1.9e-52 210.7 222 55.0
Glyma.01G233300 Glycine max HOM05D003632 ORTHO05D005497 1.9e-52 210.7 222 55.0
Ca_24435_v3 Cicer arietinum L. HOM05D003632 ORTHO05D005497 2.5e-52 210.3 222 54.5
Lj5C162T4 Lonicera japonica HOM05D003632 ORTHO05D005497 3.2e-52 209.9 222 54.5
Actinidia15538 Actinidia chinensis HOM05D003632 ORTHO05D005497 4.2e-52 209.5 222 54.5
Atru.chr13.15 Acer truncatum HOM05D003632 ORTHO05D005497 5.5e-52 209.1 222 55.0
Sed0011503 Sechium edule HOM05D003632 ORTHO05D005497 5.5e-52 209.1 222 55.9
Glyma.11G009500 Glycine max HOM05D003632 ORTHO05D005497 7.2e-52 208.8 222 54.5
Duzib248G0791 Durio zibethinus HOM05D003632 ORTHO05D005497 1.6e-51 207.6 222 55.0
Ciclev10000050m.g Citrus clementina HOM05D003632 ORTHO05D005497 2.1e-51 207.2 222 54.1
Haze_22896 Corylus avellana HOM05D003632 ORTHO05D005497 2.1e-51 207.2 222 55.4
CDE06G0366 Ceratophyllum demersum HOM05D003632 ORTHO05D005497 3.6e-51 206.5 222 54.5
Migut.D01195 Erythranthe guttata HOM05D003632 ORTHO05D005497 6.1e-51 205.7 222 54.5
Eucgr.F03633 Eucalyptus grandis HOM05D003632 ORTHO05D005497 6.1e-51 205.7 222 53.2
TWI38G0156 Tripterygium wilfordii HOM05D003632 ORTHO05D005497 8.0e-51 205.3 222 54.5
CDE07G1872 Ceratophyllum demersum HOM05D003632 ORTHO05D005497 1.0e-50 204.9 222 54.1
Phvul.002G040800 Phaseolus vulgaris HOM05D003632 ORTHO05D005497 1.0e-50 204.9 222 53.6
VMungo1215G1560 Vigna mungo HOM05D003632 ORTHO05D005497 1.0e-50 204.9 222 53.6
TWI63G1168 Tripterygium wilfordii HOM05D003632 ORTHO05D005497 1.4e-50 204.5 222 54.5
Rhsim02G0142400 Rhododendron simsii HOM05D003632 ORTHO05D005497 1.8e-50 204.1 222 55.4
Manes.05G198000 Manihot esculenta HOM05D003632 ORTHO05D005497 4.0e-50 203.0 222 54.1
EL10As5g23474 Beta vulgaris HOM05D003632 ORTHO05D005497 5.2e-50 202.6 223 54.7
PSO541G6510 Papaver somniferum HOM05D003632 ORTHO05D005497 5.2e-50 202.6 222 54.1
PSO675G5232 Papaver somniferum HOM05D003632 ORTHO05D005497 5.2e-50 202.6 222 54.1
vmacro15971 Vaccinium macrocarpon HOM05D003632 ORTHO05D005497 6.8e-50 202.2 222 55.0
Ah.11g049790 Amaranthus hybridus HOM05D003632 ORTHO05D005497 8.8e-50 201.8 222 54.5
Nn6g31540 Nelumbo nucifera HOM05D003632 ORTHO05D005497 1.5e-49 201.1 222 54.5
THA.LOC104806863 Tarenaya hassleriana HOM05D003632 ORTHO05D005497 1.5e-49 201.1 222 54.1
DCAR_003535 Daucus carota HOM05D003632 ORTHO05D005497 2.0e-49 200.7 222 52.3
MSTRG.9366 Avicennia marina HOM05D003632 ORTHO05D005497 2.6e-49 200.3 222 53.6
Psat2g189160 Pisum sativum HOM05D003632 ORTHO05D005497 2.6e-49 200.3 222 52.7
Cc04_g05970 Coffea canephora HOM05D003632 ORTHO05D005497 3.4e-49 199.9 222 52.7
PSO017G4161 Papaver somniferum HOM05D003632 ORTHO05D005497 3.4e-49 199.9 222 54.1
Rhsim09G0100400 Rhododendron simsii HOM05D003632 ORTHO05D005497 5.7e-49 199.1 236 52.1
MBI01_g09379_MAGBIO Magnolia biondii HOM05D003632 ORTHO05D005497 7.5e-49 198.7 214 56.1
BcaB07g31079 Brassica carinata HOM05D003632 ORTHO05D005497 9.8e-49 198.4 222 53.6
BcaNung05247 Brassica carinata HOM05D003632 ORTHO05D005497 9.8e-49 198.4 222 53.6
A09p19660 Brassica napus HOM05D003632 ORTHO05D005497 2.2e-48 197.2 222 53.6
ATR0605G213 Amborella trichopoda HOM05D003632 ORTHO05D005497 3.7e-48 196.4 222 52.3
ECA236G2986 Erigeron canadensis HOM05D003632 ORTHO05D005497 3.7e-48 196.4 222 51.8
Os06g0625400 Oryza sativa ssp. japonica HOM05D003632 ORTHO05D005497 3.7e-48 196.4 222 51.8
BcaC04g21997 Brassica carinata HOM05D003632 ORTHO05D005497 4.8e-48 196.1 222 53.2
C09p25020 Brassica napus HOM05D003632 ORTHO05D005497 4.8e-48 196.1 222 53.2
THA.LOC104813211 Tarenaya hassleriana HOM05D003632 ORTHO05D005497 4.8e-48 196.1 226 52.7
PSO170G0589 Papaver somniferum HOM05D003632 ORTHO05D005497 8.3e-48 195.3 222 53.6
Sp7g08050 Schrenkiella parvula HOM05D003632 ORTHO05D005497 1.8e-47 194.1 222 52.7
AL8G19100 Arabidopsis lyrata HOM05D003632 ORTHO05D005497 2.4e-47 193.7 222 52.7
AUR62011864 Chenopodium quinoa HOM05D003632 ORTHO05D005497 2.4e-47 193.7 222 53.6
Lsat_1_v5_gn_7_31540 Lactuca sativa HOM05D003632 ORTHO05D005497 2.4e-47 193.7 222 50.5
PGR031G0531 Punica granatum HOM05D003632 ORTHO05D005497 2.4e-47 193.7 222 50.5
AT5G42390 Arabidopsis thaliana HOM05D003632 ORTHO05D005497 3.1e-47 193.4 222 52.3
BolC9t55396H Brassica oleracea HOM05D003632 ORTHO05D005497 3.1e-47 193.4 214 55.1
BraA09t37577Z Brassica rapa HOM05D003632 ORTHO05D005497 3.1e-47 193.4 214 55.1
HanXRQChr15g0481001 Helianthus annuus HOM05D003632 ORTHO05D005497 3.1e-47 193.4 222 50.5
HPP92_022034 Vanilla planifolia HOM05D003632 ORTHO05D005497 4.1e-47 193.0 222 52.3
Zm00001eb387800 Zea mays HOM05D003632 ORTHO05D005497 5.4e-47 192.6 222 50.5
Carub.0008s0677 Capsella rubella HOM05D003632 ORTHO05D005497 7.0e-47 192.2 222 52.7
FAN19G0570 Fragaria x ananassa HOM05D003632 ORTHO05D005497 9.1e-47 191.8 198 57.6
Zm00001eb275640 Zea mays HOM05D003632 ORTHO05D005497 9.1e-47 191.8 222 50.5
Thhalv10003133m.g Eutrema salsugineum HOM05D003632 ORTHO05D005497 1.6e-46 191.0 222 52.3
Hma1.2p1_0471F.1_g159520 Hydrangea macrophylla HOM05D003632 ORTHO05D005497 1.6e-46 191.0 223 52.0
AUR62024707 Chenopodium quinoa HOM05D003632 ORTHO05D005497 2.7e-46 190.3 222 52.7
Oeu015114.3 Olea europaea HOM05D003632 ORTHO05D005497 3.5e-46 189.9 215 53.0
Aa31LG9G12540 Aethionema arabicum HOM05D003632 ORTHO05D005497 5.9e-46 189.1 227 51.1
PGSC0003DMG400014254 Solanum tuberosum HOM05D003632 ORTHO05D005497 5.9e-46 189.1 222 50.5
Aqoxy5G00932 Aquilegia oxysepala HOM05D003632 ORTHO05D005497 7.7e-46 188.7 222 50.5
CARHR285100 Cardamine hirsuta HOM05D003632 ORTHO05D005497 1.0e-45 188.3 222 51.8
Nitab4.5_0002450g0120 Nicotiana tabacum HOM05D003632 ORTHO05D005497 1.0e-45 188.3 226 48.7
Hund02917 Selenicereus undatus HOM05D003632 ORTHO05D005497 1.3e-45 188.0 222 50.9
Sopen03g037320 Solanum pennellii HOM05D003632 ORTHO05D005497 1.3e-45 188.0 222 50.5
Solyc03g118430.3 Solanum lycopersicum HOM05D003632 ORTHO05D005497 1.7e-45 187.6 222 50.0
CAN.G2827.2 Capsicum annuum HOM05D003632 ORTHO05D005497 2.2e-45 187.2 222 49.5
CAN.G843.30 Capsicum annuum HOM05D003632 ORTHO05D005497 2.2e-45 187.2 222 49.5
Nitab4.5_0002046g0120 Nicotiana tabacum HOM05D003632 ORTHO05D005497 2.9e-45 186.8 222 49.5
Sc17g0000620 Simmondsia chinensis HOM05D003632 ORTHO05D005497 3.8e-45 186.4 222 51.4
Peaxi162Scf00314g00434 Petunia axillaris HOM05D003632 ORTHO05D005497 6.5e-45 185.7 222 49.5
Sabra14G0112500 Salix brachista HOM05D003632 ORTHO05D005497 6.5e-45 185.7 278 44.6
unitig_0.g345 Utricularia gibba HOM05D003632 ORTHO05D005497 2.5e-44 183.7 222 49.1
Cpa.g.sc36.89 Carica papaya HOM05D003632 ORTHO05D005497 3.2e-44 183.3 176 59.1
HanXRQChr04g0119021 Helianthus annuus HOM05D003632 ORTHO05D005497 3.2e-44 183.3 223 48.9
SHI18575 Sapria himalayana HOM05D003632 ORTHO05D005497 4.7e-43 179.5 224 48.2
Lalb_Chr16g0376561 Lupinus albus HOM05D003632 ORTHO05D005497 5.7e-41 172.6 161 60.2
SalBow1G1353 Salvia bowleyana HOM05D003632 ORTHO05D005497 5.7e-41 172.6 177 53.1
FvH4_7g00590 Fragaria vesca HOM05D003632 ORTHO05D046112 7.5e-41 172.2 199 55.8
FAN10G1660 Fragaria x ananassa HOM05D003632 ORTHO05D046112 2.4e-39 167.2 214 51.9
CAN.G1425.12 Capsicum annuum HOM05D003632 ORTHO05D005497 5.9e-38 162.5 206 48.1
FAN03G0989 Fragaria x ananassa HOM05D003632 ORTHO05D005497 2.3e-37 160.6 177 55.4
Mapoly0022s0090 Marchantia polymorpha HOM05D003632 ORTHO05D005497 1.5e-36 157.9 221 43.0
FvH4_7g00770 Fragaria vesca HOM05D003632 ORTHO05D002531 3.3e-36 156.8 91 89.0
FAN06G4184 Fragaria x ananassa HOM05D003632 ORTHO05D005497 9.5e-36 155.2 135 68.9
AagrBONN_evm.TU.Sc2ySwM_117.2840 Anthoceros agrestis HOM05D003632 ORTHO05D005497 2.1e-35 154.1 221 43.4
Pp3c16_2100 Physcomitrium patens HOM05D003632 ORTHO05D005497 8.0e-35 152.1 221 42.1
FAN23G2090 Fragaria x ananassa HOM05D003632 ORTHO05D005497 2.3e-34 150.6 130 65.4
FvH4_1g28270 Fragaria vesca HOM05D003632 ORTHO05D005497 8.9e-34 148.7 133 63.2
FvH4_7g05210 Fragaria vesca HOM05D003632 ORTHO05D017240 8.3e-32 142.1 107 75.7
CBR_g32249 Chara braunii HOM05D003632 ORTHO05D005497 8.9e-26 122.1 233 35.2
FAN27G3187 Fragaria x ananassa HOM05D003632 ORTHO05D005497 4.6e-22 109.8 104 59.6
FAN06G3471 Fragaria x ananassa HOM05D003632 ORTHO05D017240 1.9e-20 104.4 72 76.4
FvH4_7g02670 Fragaria vesca HOM05D003632 ORTHO05D017240 3.6e-19 100.1 70 74.3
SMO117G0011 Selaginella moellendorffii HOM05D003632 ORTHO05D005497 5.4e-15 86.3 213 30.5
Cre17.g723250 Chlamydomonas reinhardtii HOM05D003632 ORTHO05D005497 9.2e-15 85.5 184 33.7
FvH4_7g01540 Fragaria vesca HOM05D003632 ORTHO05D005497 2.7e-14 84.0 88 58.0
FAN10G3171 Fragaria x ananassa HOM05D003632 ORTHO05D005497 6.0e-14 82.8 49 85.7
FAN06G0859 Fragaria x ananassa HOM05D003632 ORTHO05D046128 7.8e-14 82.4 53 75.5
PRCOL_00001043 Prasinoderma coloniale HOM05D003632 ORTHO05D005497 2.5e-12 77.4 220 28.6
FAN03G2152 Fragaria x ananassa HOM05D003632 ORTHO05D005497 4.7e-11 73.2 88 53.4
MCO10G275 Micromonas commoda HOM05D003632 ORTHO05D005497 7.6e-09 65.9 192 25.5
FvH4_7g01860 Fragaria vesca HOM05D003632 ORTHO05D046128 9.9e-09 65.5 40 80.0
FvH4_7g01530 Fragaria vesca HOM05D003632 ORTHO05D021463 4.9e-08 63.2 61 57.4
FAN06G0417 Fragaria x ananassa HOM05D003632 ORTHO05D021463 4.9e-08 63.2 61 57.4
arahy.Tifrunner.gnm1.ann1.Q7U2Y9 Arachis hypogaea HOM05D003632 ORTHO05D021463 6.4e-08 62.8 68 51.5
FvH4_7g05200 Fragaria vesca HOM05D003632 ORTHO05D196677 1.1e-07 62.0 45 62.2
Glyma.05G077034 Glycine max HOM05D003632 ORTHO05D021463 9.2e-07 58.9 69 47.8
Aa31LG2G1380 Aethionema arabicum HOM05D003632 ORTHO05D017240 4.6e-06 56.6 49 59.2
FAN10G3129 Fragaria x ananassa HOM05D003632 ORTHO05D201925 4.6e-06 56.6 36 69.4


User provided reference genes

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