Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 0.0e+00 1331.2 689 100.0
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 0.0e+00 1275.8 691 94.2
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 0.0e+00 1259.6 691 93.6
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 0.0e+00 1253.0 711 91.1
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 0.0e+00 1249.6 714 90.6
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 0.0e+00 1154.8 696 84.8
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 2.3e-216 756.1 708 61.6
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 4.2e-210 735.3 701 58.5
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 3.2e-170 602.8 475 69.9
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 3.7e-166 589.3 716 49.2
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 2.0e-164 583.6 729 48.1
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 1.3e-163 580.9 711 49.2
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 4.3e-162 575.9 724 47.8
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 9.5e-162 574.7 720 49.7
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 1.0e-160 571.2 720 49.6
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 8.3e-158 561.6 735 46.7
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 7.0e-157 558.5 720 49.0
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 4.6e-156 555.8 719 47.3
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 5.0e-155 552.4 719 47.1
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 5.6e-154 548.9 723 46.9
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 2.3e-152 543.5 709 45.6
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 2.0e-151 540.4 711 46.4
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 2.6e-151 540.0 711 46.4
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 9.2e-149 531.6 742 44.3
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 7.8e-148 528.5 703 47.2
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 3.0e-147 526.6 720 46.5
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 6.6e-147 525.4 727 46.1
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 3.3e-146 523.1 717 44.4
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 2.8e-145 520.0 742 43.1
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 1.8e-144 517.3 717 44.8
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.2e-143 514.6 711 44.9
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 3.4e-143 513.1 724 45.6
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 7.5e-143 511.9 654 47.6
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 1.6e-140 504.2 711 45.0
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 2.1e-140 503.8 735 45.2
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 3.3e-138 496.5 633 47.1
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 1.2e-137 494.6 701 47.6
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 1.8e-136 490.7 726 44.4
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 2.4e-133 480.3 725 42.2
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 4.1e-133 479.6 722 45.6
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 9.2e-133 478.4 708 43.8
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 2.1e-132 477.2 657 43.8
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 1.1e-130 471.5 703 41.1
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.9e-130 470.7 733 41.9
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 3.3e-130 469.9 718 42.3
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 4.3e-130 469.5 728 44.1
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 9.6e-130 468.4 718 42.3
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 2.1e-129 467.2 731 42.7
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 4.4e-127 459.5 703 42.8
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 8.4e-126 455.3 715 42.0
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 4.2e-125 453.0 719 40.5
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 1.2e-124 451.4 715 42.1
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 1.6e-124 451.1 714 40.2
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 1.6e-124 451.1 708 41.9
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 3.5e-124 449.9 708 41.2
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 4.6e-124 449.5 709 41.9
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 9.6e-122 441.8 713 41.7
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.1e-120 438.3 780 40.3
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 1.4e-120 438.0 709 38.6
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 3.1e-120 436.8 549 47.5
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 9.9e-119 431.8 711 41.9
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 2.2e-118 430.6 702 40.0
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 2.9e-118 430.3 644 41.5
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 6.4e-118 429.1 719 39.1
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 9.3e-117 425.2 714 40.1
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.2e-116 424.9 591 41.1
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 7.9e-116 422.2 716 41.5
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 3.0e-115 420.2 727 40.2
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 6.7e-115 419.1 727 40.0
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 6.7e-115 419.1 687 42.4
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 1.1e-114 418.3 644 41.5
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.5e-114 417.9 459 55.8
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 3.3e-114 416.8 734 39.9
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 2.8e-113 413.7 725 39.9
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 1.5e-111 407.9 725 38.1
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 2.6e-111 407.1 728 40.4
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 2.6e-111 407.1 727 39.8
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 3.8e-110 403.3 701 39.1
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 2.4e-109 400.6 597 41.7
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 3.2e-109 400.2 712 38.3
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 2.7e-108 397.1 604 42.1
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 3.0e-107 393.7 701 38.1
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 2.5e-106 390.6 558 41.9
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 7.4e-106 389.0 666 38.6
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 4.0e-104 383.3 600 40.8
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.5e-103 381.3 695 37.8
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.5e-103 381.3 642 39.7
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 1.0e-102 378.6 593 40.3
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 2.2e-102 377.5 710 37.6
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 3.8e-102 376.7 735 36.7
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 7.9e-100 369.0 681 38.0
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 3.9e-99 366.7 713 37.2
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 3.3e-98 363.6 696 37.1
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 3.7e-97 360.1 683 38.9
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 6.9e-96 355.9 661 39.2
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 1.1e-93 348.6 585 40.5
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 5.5e-93 346.3 511 44.2
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 3.6e-92 343.6 506 41.1
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 9.1e-88 328.9 543 40.0
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 9.7e-82 308.9 733 33.0
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 4.8e-81 306.6 484 41.5
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 3.1e-80 303.9 689 34.3
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 5.3e-80 303.1 735 33.2
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 6.9e-80 302.8 661 32.7
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 1.7e-78 298.1 610 34.9
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 5.0e-78 296.6 624 34.1
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 2.5e-77 294.3 521 37.4
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 9.4e-77 292.4 602 34.6
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.2e-76 292.0 464 39.7
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 2.7e-76 290.8 499 41.1
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 3.0e-75 287.3 510 36.9
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 9.7e-74 282.3 757 31.8
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 9.1e-72 275.8 672 31.8
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 2.9e-70 270.8 677 31.0
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 2.9e-70 270.8 677 31.0
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.8e-67 261.5 446 39.2
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 9.1e-64 249.2 477 39.2
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 1.7e-62 245.0 615 31.4
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 3.2e-61 240.7 370 40.3
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 4.7e-60 236.9 359 40.4
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 8.0e-60 236.1 418 40.2
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.0e-54 219.2 613 30.7
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 9.5e-53 212.6 249 54.6
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 3.5e-47 194.1 444 33.6
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 6.1e-44 183.3 228 44.3
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 9.8e-42 176.0 241 45.2
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 1.3e-41 175.6 231 44.2
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.2e-41 174.9 183 51.4
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 1.9e-37 161.8 243 43.6
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 1.2e-36 159.1 234 50.4
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 5.2e-35 153.7 224 38.8
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 6.8e-35 153.3 265 35.5
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 7.5e-34 149.8 228 39.0
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.7e-33 148.7 384 30.2
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.3e-30 139.0 129 52.7
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 6.6e-30 136.7 332 33.4
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.6e-28 132.1 233 38.2
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 3.1e-27 127.9 206 36.9
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 6.0e-23 113.6 448 26.3
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 8.6e-22 109.8 364 29.9
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.1e-20 105.1 104 54.8
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 2.1e-20 105.1 254 33.1
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 6.8e-19 100.1 624 24.4
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 6.8e-19 100.1 158 36.7
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 8.9e-19 99.8 70 61.4
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 2.0e-18 98.6 86 51.2
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 1.1e-16 92.8 141 41.8
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.9e-16 92.0 82 52.4
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 2.4e-16 91.7 129 42.6
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 7.1e-16 90.1 77 61.0
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 7.1e-16 90.1 80 53.8
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 1.2e-15 89.4 133 36.1
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 2.1e-15 88.6 187 35.3
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 3.0e-14 84.7 66 57.6
QL06p009809 Quercus lobata HOM05D004086 ORTHO05D004641 6.6e-14 83.6 81 55.6
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 4.7e-12 77.4 159 35.8
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 2.4e-11 75.1 142 33.8
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 1.2e-10 72.8 118 38.1
PRCOL_00000416 Prasinoderma coloniale HOM05D004086 ORTHO05D004641 1.3e-09 69.3 384 25.8
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.7e-09 68.9 103 42.7
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 8.4e-09 66.6 105 41.0
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 4.6e-07 60.8 52 57.7
Zm00001eb176250 Zea mays HOM05D004086 ORTHO05D004641 6.6e-06 57.0 179 28.5


User provided reference genes

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