Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 2017.3 1080 100.0
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1996.1 1120 96.3
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1968.0 1080 98.1
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1948.7 1083 97.3
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1932.1 1083 96.9
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1829.3 1086 91.5
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1761.1 1092 86.8
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1674.4 1092 82.7
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1637.5 1046 81.8
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1613.2 1092 79.9
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1579.3 1084 79.1
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1577.4 1076 77.8
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1573.1 1097 75.1
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1572.4 1076 78.4
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1570.4 1103 77.8
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1570.1 1095 75.3
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1565.4 1076 77.5
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1562.7 1042 80.9
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1559.3 1092 77.3
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1555.0 1094 76.8
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1555.0 1056 77.7
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1555.0 1094 77.3
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1550.8 1091 76.5
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1550.8 1090 77.8
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1550.8 1093 75.9
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1550.0 1078 76.1
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1549.6 1041 77.9
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1549.3 1093 77.5
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1548.5 1075 78.1
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1543.1 1087 77.5
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1541.2 1096 76.6
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1537.7 1120 74.8
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1534.2 1113 74.9
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1532.3 989 81.6
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1532.3 1094 73.5
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1531.5 1096 76.6
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1529.2 1101 76.8
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1526.9 1096 75.1
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1526.9 1096 75.1
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1520.8 1114 72.2
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1516.1 1095 76.2
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1515.4 1094 72.0
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1506.5 1072 74.3
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1505.7 1077 76.0
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1501.1 1178 71.2
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1494.9 1120 73.4
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1483.8 1111 71.7
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1483.4 1067 74.9
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1477.2 1055 74.6
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1464.1 1087 71.8
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1460.7 869 82.9
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1460.7 869 83.0
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1459.9 1092 70.4
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1459.5 972 75.4
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1459.1 869 82.9
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1459.1 867 83.4
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1456.8 1084 71.6
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1448.7 1094 70.8
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1444.1 970 74.5
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1443.7 1090 71.0
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1437.2 938 76.8
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1436.8 1097 71.6
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1431.0 938 75.7
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1428.7 938 74.9
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1426.8 1102 70.5
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1419.4 1032 71.9
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1416.4 1098 70.8
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1412.9 1091 70.9
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1408.3 971 73.4
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1407.5 939 74.9
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1407.5 939 74.9
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1406.3 939 74.8
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1406.3 939 74.8
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1396.7 1085 68.0
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1394.4 1074 70.7
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1391.7 1073 70.8
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1389.0 1087 68.9
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1387.9 1082 69.5
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1376.7 869 79.3
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1375.5 929 74.2
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1370.9 1148 67.1
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1368.6 1001 69.9
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1358.2 929 72.4
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1357.4 1111 67.2
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1339.7 1103 67.7
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1338.6 1145 65.2
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1337.4 1090 65.3
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1330.1 1096 69.5
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1316.2 1073 65.3
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1315.4 1203 61.2
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1314.3 1068 65.8
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1309.3 1018 69.3
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 0.0e+00 1305.0 896 72.8
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1297.7 1043 65.5
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1285.4 1248 57.8
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 1276.5 1084 66.4
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1263.1 925 69.8
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 0.0e+00 1207.2 1056 60.2
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 0.0e+00 1194.5 880 66.0
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 0.0e+00 1178.3 928 64.0
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 0.0e+00 1124.4 937 61.6
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 0.0e+00 1104.7 692 78.8
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 0.0e+00 1104.4 690 78.8
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 1.8e-308 1062.8 1081 56.8
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 4.8e-277 958.4 632 76.1
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 5.3e-276 954.9 687 70.9
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 6.0e-272 941.4 744 62.1
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 9.3e-265 917.5 544 82.0
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 4.5e-259 898.7 620 73.1
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.3e-186 657.9 549 60.7
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 2.5e-169 600.5 519 68.4
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 7.6e-158 562.4 445 64.0
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 1.0e-149 535.4 318 83.0
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 6.7e-122 443.0 450 55.1
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 2.0e-121 441.4 368 58.2
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 4.1e-111 407.1 274 74.5
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 9.1e-111 406.0 425 63.3
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 1.1e-95 355.9 233 75.1
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 1.5e-92 345.5 276 64.5
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 1.5e-92 345.5 230 73.5
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 9.5e-92 342.8 1028 27.7
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 1.2e-89 335.9 324 57.4
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 2.0e-86 325.1 213 77.0
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 8.6e-77 293.1 1073 25.5
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 8.4e-64 250.0 134 88.1
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 1.9e-60 238.8 187 63.1
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 9.6e-60 236.5 386 38.3
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.3e-52 211.1 145 69.0
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 9.9e-49 199.9 243 51.9
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 2.5e-44 185.3 99 85.9
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.3e-43 183.0 107 86.0
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 2.4e-42 178.7 225 43.1
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 3.1e-42 178.3 212 46.7
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 2.9e-40 171.8 103 74.8
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 5.5e-39 167.5 108 72.2
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.5e-38 164.9 149 57.7
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 6.0e-38 164.1 104 76.0
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 3.9e-37 161.4 188 48.9
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.6e-35 156.0 119 63.9
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 4.8e-35 154.5 237 41.4
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 3.4e-33 148.3 170 53.5
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.7e-32 146.0 484 27.3
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 2.2e-32 145.6 170 52.9
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.0e-29 136.7 93 76.3
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 9.7e-28 130.2 106 68.9
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 4.7e-22 111.3 108 57.4
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 4.7e-22 111.3 108 57.4
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 4.7e-22 111.3 108 57.4
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 1.5e-20 106.3 97 66.0
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.4e-20 104.8 126 50.8
Hma1.2p1_0508F.1_g168780 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 6.3e-19 100.9 79 63.3
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.1e-18 100.1 67 70.1
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 1.1e-18 100.1 295 35.3
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.1e-18 98.6 134 44.8
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.1e-18 98.2 75 64.0
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.2e-17 96.7 59 78.0
Hma1.2p1_0430F.1_g151320 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.0e-16 93.6 61 75.4
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.7e-16 92.8 79 57.0
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 8.5e-16 90.5 47 97.9
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 2.5e-15 89.0 51 80.4
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.0e-13 83.6 60 61.7
HPP92_012555 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.3e-13 82.4 187 37.4
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 7.4e-12 77.4 106 45.3
Psat6g098400 Pisum sativum HOM05D003881 ORTHO05D004343 3.7e-11 75.1 63 57.1
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.7e-11 75.1 65 56.9
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 8.2e-11 73.9 79 51.9
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 1.8e-10 72.8 79 51.9
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 1.6e-09 69.7 66 54.5
PRCOL_00001933 Prasinoderma coloniale HOM05D026299 ORTHO05D028720 2.1e-06 59.3 146 26.7
SEGI_25041 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.7e-06 58.2 83 38.6
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 8.0e-06 57.4 218 24.8
SEGI_25641 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 8.0e-06 57.4 38 65.8


User provided reference genes

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