Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G0227 Fragaria x ananassa HOM05D006972 ORTHO05D008519 2.9e-160 568.5 290 100.0
FvH4_1g10321 Fragaria vesca HOM05D011470 ORTHO05D016309 6.1e-78 295.0 154 94.2
FAN19G1393 Fragaria x ananassa HOM05D011470 ORTHO05D016309 3.3e-76 289.3 204 76.0
RcHm_v2.0_Chr2g0097171 Rosa chinensis HOM05D011470 ORTHO05D035828 2.2e-59 233.4 155 76.1
FvH4_1g10330 Fragaria vesca HOM05D006972 ORTHO05D008519 1.6e-57 227.3 154 80.5
FAN19G2622 Fragaria x ananassa HOM05D006972 ORTHO05D008519 5.9e-57 225.3 154 80.5
FAN23G2574 Fragaria x ananassa HOM05D006972 ORTHO05D008519 1.3e-56 224.2 182 68.1
FAN28G1610 Fragaria x ananassa HOM05D011470 ORTHO05D035828 3.8e-56 222.6 115 92.2
RcHm_v2.0_Chr2g0097181 Rosa chinensis HOM05D006972 ORTHO05D008519 3.3e-55 219.5 154 76.0
FAN28G2862 Fragaria x ananassa HOM05D006972 ORTHO05D008519 5.2e-53 212.2 111 97.3
Glyma.01G158800 Glycine max HOM05D006972 ORTHO05D008519 3.5e-49 199.5 152 70.4
Psat2g148200 Pisum sativum HOM05D006972 ORTHO05D008519 3.5e-49 199.5 159 67.9
Atru.chr3.134 Acer truncatum HOM05D006972 ORTHO05D008519 7.8e-49 198.4 153 68.6
TPR.G33865 Trifolium pratense HOM05D006972 ORTHO05D008519 1.3e-48 197.6 154 68.2
Manes.01G155400 Manihot esculenta HOM05D006972 ORTHO05D008519 3.0e-48 196.4 153 68.0
ClCG10G000270 Citrullus lanatus HOM05D006972 ORTHO05D008519 3.9e-48 196.1 153 67.3
MELO3C013724.2 Cucumis melo HOM05D006972 ORTHO05D008519 3.9e-48 196.1 153 66.7
CiPaw.08G181600 Carya illinoinensis HOM05D006972 ORTHO05D008519 5.0e-48 195.7 153 66.7
Ciclev10026547m.g Citrus clementina HOM05D006972 ORTHO05D008519 6.6e-48 195.3 153 68.0
Eucgr.I02225 Eucalyptus grandis HOM05D006972 ORTHO05D008519 1.5e-47 194.1 153 66.0
GSVIVG01026641001 Vitis vinifera HOM05D006972 ORTHO05D008519 1.9e-47 193.7 153 69.3
Cpa.g.sc365.5 Carica papaya HOM05D006972 ORTHO05D008519 2.5e-47 193.4 153 67.3
Lalb_Chr16g0380011 Lupinus albus HOM05D006972 ORTHO05D008519 2.5e-47 193.4 154 66.9
PSO541G2195 Papaver somniferum HOM05D006972 ORTHO05D008519 2.5e-47 193.4 149 67.8
RcHm_v2.0_Chr1g0346531 Rosa chinensis HOM05D006972 ORTHO05D008519 2.5e-47 193.4 142 72.5
TWI73G0968 Tripterygium wilfordii HOM05D006972 ORTHO05D008519 2.5e-47 193.4 152 67.8
CsaV3_3G000300 Cucumis sativus L. HOM05D006972 ORTHO05D008519 3.3e-47 193.0 153 66.0
Haze_03661 Corylus avellana HOM05D006972 ORTHO05D008519 4.3e-47 192.6 175 61.1
Medtr5g024200 Medicago truncatula HOM05D006972 ORTHO05D008519 4.3e-47 192.6 154 68.2
Potri.005G101501 Populus trichocarpa HOM05D006972 ORTHO05D008519 4.3e-47 192.6 150 65.3
RcHm_v2.0_Chr2g0090391 Rosa chinensis HOM05D006972 ORTHO05D008519 4.3e-47 192.6 142 72.5
Sed0027466 Sechium edule HOM05D006972 ORTHO05D008519 4.3e-47 192.6 153 65.4
Prupe.7G182900 Prunus persica HOM05D006972 ORTHO05D008519 9.5e-47 191.4 153 69.3
Ca_24981_v3 Cicer arietinum L. HOM05D006972 ORTHO05D008519 1.2e-46 191.0 153 66.0
TAR628G0904 Trochodendron aralioides HOM05D006972 ORTHO05D008519 1.2e-46 191.0 153 66.7
Cfa007077 Carpinus fangiana HOM05D006972 ORTHO05D008519 2.8e-46 189.9 153 65.4
Haze_03655 Corylus avellana HOM05D006972 ORTHO05D008519 3.6e-46 189.5 153 66.0
VMungo1215G1992 Vigna mungo HOM05D006972 ORTHO05D008519 4.7e-46 189.1 152 69.1
Phvul.002G116601 Phaseolus vulgaris HOM05D006972 ORTHO05D008519 6.2e-46 188.7 152 67.8
Gohir.D07G177900 Gossypium hirsutum HOM05D006972 ORTHO05D008519 8.0e-46 188.3 154 63.0
arahy.Tifrunner.gnm1.ann1.B19VPR Arachis hypogaea HOM05D006972 ORTHO05D008519 1.0e-45 188.0 126 75.4
arahy.Tifrunner.gnm1.ann1.K20VQB Arachis hypogaea HOM05D006972 ORTHO05D008519 1.0e-45 188.0 126 75.4
Cc07_g11850 Coffea canephora HOM05D006972 ORTHO05D008519 1.0e-45 188.0 152 65.8
Gohir.A07G171100 Gossypium hirsutum HOM05D006972 ORTHO05D008519 1.4e-45 187.6 154 63.0
Oeu012451.1 Olea europaea HOM05D006972 ORTHO05D008519 1.4e-45 187.6 153 66.7
Migut.L00961 Erythranthe guttata HOM05D006972 ORTHO05D008519 3.1e-45 186.4 154 65.6
Gorai.001G199000 Gossypium raimondii HOM05D006972 ORTHO05D008519 3.1e-45 186.4 154 62.3
Lj2g0018473 Lotus japonicus HOM05D006972 ORTHO05D008519 3.1e-45 186.4 140 70.0
QL06p052953 Quercus lobata HOM05D006972 ORTHO05D008519 4.0e-45 186.0 175 60.6
Rhsim10G0195900 Rhododendron simsii HOM05D006972 ORTHO05D008519 4.0e-45 186.0 127 71.7
CSS0043244 Camellia sinensis var. sinensis HOM05D006972 ORTHO05D008519 5.2e-45 185.7 153 63.4
MSTRG.3630 Avicennia marina HOM05D006972 ORTHO05D008519 6.8e-45 185.3 153 63.4
Lsat_1_v5_gn_2_73640 Lactuca sativa HOM05D006972 ORTHO05D008519 6.8e-45 185.3 154 65.6
Nn5g30989 Nelumbo nucifera HOM05D006972 ORTHO05D008519 1.2e-44 184.5 139 69.8
Solyc03g032120.3 Solanum lycopersicum HOM05D006972 ORTHO05D008519 1.2e-44 184.5 153 63.4
Aqoxy5G01011 Aquilegia oxysepala HOM05D006972 ORTHO05D008519 2.0e-44 183.7 153 65.4
Nitab4.5_0005297g0020 Nicotiana tabacum HOM05D006972 ORTHO05D008519 2.0e-44 183.7 153 64.1
PSO675G3277 Papaver somniferum HOM05D006972 ORTHO05D008519 2.0e-44 183.7 125 71.2
CANSAT25G3183 Cannabis sativa HOM05D006972 ORTHO05D008519 2.6e-44 183.3 152 65.1
AL8G45620 Arabidopsis lyrata HOM05D006972 ORTHO05D008519 3.4e-44 183.0 153 61.4
Nitab4.5_0000495g0120 Nicotiana tabacum HOM05D006972 ORTHO05D008519 4.4e-44 182.6 153 63.4
SalBow5G0785 Salvia bowleyana HOM05D006972 ORTHO05D008519 4.4e-44 182.6 153 64.7
THA.LOC104826441 Tarenaya hassleriana HOM05D006972 ORTHO05D008519 4.4e-44 182.6 159 62.3
MBI05_g14344_MAGBIO Magnolia biondii HOM05D006972 ORTHO05D008519 5.8e-44 182.2 149 64.4
Zm00001eb002450 Zea mays HOM05D006972 ORTHO05D008519 5.8e-44 182.2 139 66.2
Actinidia17360 Actinidia chinensis HOM05D006972 ORTHO05D008519 7.5e-44 181.8 153 62.7
HanXRQChr14g0442531 Helianthus annuus HOM05D006972 ORTHO05D008519 2.2e-43 180.3 154 64.9
Duzib147G0479 Durio zibethinus HOM05D006972 ORTHO05D008519 2.9e-43 179.9 154 60.4
AT5G66005 Arabidopsis thaliana HOM05D006972 ORTHO05D008519 6.4e-43 178.7 153 60.1
vmacro20633 Vaccinium macrocarpon HOM05D006972 ORTHO05D008519 1.1e-42 177.9 152 59.2
ECA238G2655 Erigeron canadensis HOM05D006972 ORTHO05D008519 1.9e-42 177.2 127 70.9
CAN.G354.14 Capsicum annuum HOM05D006972 ORTHO05D008519 5.4e-42 175.6 139 65.5
Thecc.01G005600 Theobroma cacao HOM05D006972 ORTHO05D008519 9.2e-42 174.9 154 57.8
CDE04G1133 Ceratophyllum demersum HOM05D006972 ORTHO05D008519 1.2e-41 174.5 131 64.9
Sc03g0003950 Simmondsia chinensis HOM05D006972 ORTHO05D008519 1.2e-41 174.5 153 58.8
COL.COLO4_24144 Corchorus olitorius HOM05D006972 ORTHO05D008519 2.0e-41 173.7 126 69.0
Hund19696 Selenicereus undatus HOM05D006972 ORTHO05D008519 5.0e-40 169.1 153 56.9
SGA_v2.0_scaffold132G34519 Striga asiatica HOM05D006972 ORTHO05D008519 5.6e-39 165.6 159 57.9
EL10Ac5g11121 Beta vulgaris HOM05D006972 ORTHO05D008519 1.4e-37 161.0 159 54.1
AUR62021571 Chenopodium quinoa HOM05D006972 ORTHO05D008519 1.4e-37 161.0 153 53.6
ATR0807G046 Amborella trichopoda HOM05D006972 ORTHO05D008519 3.1e-37 159.8 125 64.0
Carub.0008s2851 Capsella rubella HOM05D006972 ORTHO05D008519 6.8e-37 158.7 169 53.8
AUR62008520 Chenopodium quinoa HOM05D006972 ORTHO05D008519 1.2e-36 157.9 153 52.3
HPP92_026034 Vanilla planifolia HOM05D006972 ORTHO05D008519 4.4e-36 156.0 145 57.2
Ah.02g113990 Amaranthus hybridus HOM05D006972 ORTHO05D008519 5.8e-36 155.6 150 52.0
Lsat_1_v5_gn_5_10160 Lactuca sativa HOM05D006972 ORTHO05D008519 2.7e-33 146.7 102 73.5
MD15G1231300 Malus domestica HOM05D006972 ORTHO05D008519 1.0e-32 144.8 86 80.2
Peaxi162Scf00122g02416 Petunia axillaris HOM05D006972 ORTHO05D008519 2.3e-32 143.7 82 82.9
RcHm_v2.0_Chr5g0047551 Rosa chinensis HOM05D006972 ORTHO05D008519 3.9e-32 142.9 79 88.6
FAN23G2087 Fragaria x ananassa HOM05D011470 ORTHO05D035828 7.3e-31 138.7 154 53.9
Os03g0130750 Oryza sativa ssp. japonica HOM05D006972 ORTHO05D008519 2.1e-30 137.1 86 74.4
RcHm_v2.0_Chr5g0015201 Rosa chinensis HOM05D006972 ORTHO05D008519 4.0e-29 132.9 71 91.5
Lsat_1_v5_gn_1_125281 Lactuca sativa HOM05D006972 ORTHO05D008519 7.6e-20 102.1 76 71.1
SMO352G0055 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 7.6e-20 102.1 119 48.7
Mapoly0114s0024 Marchantia polymorpha HOM05D006972 ORTHO05D008519 6.4e-19 99.0 130 50.8
Sopen03g005970 Solanum pennellii HOM05D006972 ORTHO05D008519 6.4e-19 99.0 103 53.4
Lsat_1_v5_gn_8_30121 Lactuca sativa HOM05D006972 ORTHO05D008519 1.4e-18 97.8 62 75.8
CANSAT35G0485 Cannabis sativa HOM05D006972 ORTHO05D008519 6.0e-17 92.4 52 86.5
unitig_747.g21812 Utricularia gibba HOM05D006972 ORTHO05D008519 3.9e-16 89.7 168 39.9
Cre16.g682050 Chlamydomonas reinhardtii HOM05D006972 ORTHO05D008519 5.1e-16 89.4 117 47.0
Prupe.7G176700 Prunus persica HOM05D000151 ORTHO05D000074 6.2e-14 82.4 155 38.7
Glyma.11G085800 Glycine max HOM05D006972 ORTHO05D008519 1.1e-13 81.6 100 51.0
PRCOL_00004399 Prasinoderma coloniale HOM05D006972 ORTHO05D008519 2.4e-13 80.5 120 43.3
RcHm_v2.0_Chr2g0098141 Rosa chinensis HOM05D000151 ORTHO05D000074 4.5e-12 76.3 143 37.8
Prupe.7G176500 Prunus persica HOM05D000151 ORTHO05D000074 5.8e-12 75.9 113 40.7
Prupe.7G176800 Prunus persica HOM05D000151 ORTHO05D000074 7.6e-12 75.5 146 36.3
SMO147G0393 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 3.8e-11 73.2 95 36.8
FAN28G1149 Fragaria x ananassa HOM05D000151 ORTHO05D000074 4.9e-11 72.8 140 37.1
CANSAT25G3017 Cannabis sativa HOM05D000151 ORTHO05D000074 6.4e-11 72.4 143 32.9
FvH4_1g10850 Fragaria vesca HOM05D000151 ORTHO05D000074 8.4e-11 72.0 143 35.7
MCO16G109 Micromonas commoda HOM05D006972 ORTHO05D008519 8.4e-11 72.0 161 37.9
FAN19G1876 Fragaria x ananassa HOM05D000151 ORTHO05D000074 2.4e-10 70.5 143 35.7
MD15G1231400 Malus domestica HOM05D006972 ORTHO05D008519 9.3e-10 68.6 73 56.2
Mapoly0023s0154 Marchantia polymorpha HOM05D006972 ORTHO05D008519 1.2e-09 68.2 115 35.7
MD14G1159500 Malus domestica HOM05D000151 ORTHO05D000074 2.1e-09 67.4 142 35.2
Actinidia22899 Actinidia chinensis HOM05D006972 ORTHO05D008519 6.0e-09 65.9 36 86.1
CBR_g19759 Chara braunii HOM05D006972 ORTHO05D008519 6.0e-09 65.9 86 45.3
FAN19G1645 Fragaria x ananassa HOM05D016448 ORTHO05D000074 2.3e-08 63.9 179 34.1
MD15G1237600 Malus domestica HOM05D000151 ORTHO05D000074 3.0e-08 63.5 175 32.6
Prupe.7G176900 Prunus persica HOM05D000151 ORTHO05D000074 3.0e-08 63.5 137 33.6
FAN17G2765 Fragaria x ananassa HOM05D016448 ORTHO05D000074 6.7e-08 62.4 173 32.4
Pp3c11_19180 Physcomitrium patens HOM05D006972 ORTHO05D008519 8.7e-08 62.0 114 33.3
Pp3c7_7150 Physcomitrium patens HOM05D006972 ORTHO05D008519 8.7e-08 62.0 112 33.9
FAN23G1786 Fragaria x ananassa HOM05D000151 ORTHO05D000074 4.3e-07 59.7 107 37.4
FAN09G1487 Fragaria x ananassa HOM05D016448 ORTHO05D000074 5.6e-07 59.3 144 32.6
Lsat_1_v5_gn_3_12301 Lactuca sativa HOM05D035019 ORTHO05D008519 1.6e-06 57.8 33 78.8
Lsat_1_v5_gn_8_143201 Lactuca sativa HOM05D035019 ORTHO05D008519 1.6e-06 57.8 33 78.8
Dinv12042 Davidia involucrata HOM05D000151 ORTHO05D000074 2.8e-06 57.0 165 30.3
FAN07G2053 Fragaria x ananassa HOM05D016448 ORTHO05D208104 6.2e-06 55.8 135 31.1
Aqoxy6G01889 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 8.1e-06 55.5 255 25.5
CiPaw.07G005500 Carya illinoinensis HOM05D000151 ORTHO05D000074 8.1e-06 55.5 143 29.4


User provided reference genes

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