Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.9e-167 592.4 296 100.0
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.0e-157 560.1 296 95.6
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 2.0e-156 555.8 296 94.9
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 1.0e-144 516.9 292 88.0
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 3.7e-123 445.3 296 76.0
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 1.2e-121 440.3 302 76.2
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 1.1e-119 433.7 299 70.9
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 2.5e-119 432.6 294 71.1
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 2.1e-118 429.5 298 71.8
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 4.7e-118 428.3 290 72.8
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.4e-117 426.8 284 72.9
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 1.8e-117 426.4 304 70.7
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 3.1e-117 425.6 282 72.3
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 6.8e-117 424.5 287 72.5
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 6.8e-117 424.5 296 73.0
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 8.9e-117 424.1 291 71.8
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 1.2e-116 423.7 286 71.3
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 1.5e-116 423.3 291 71.8
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 2.0e-116 422.9 293 70.0
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 1.7e-115 419.9 298 69.1
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 3.7e-115 418.7 291 69.8
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 1.1e-114 417.2 297 69.0
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 1.1e-114 417.2 254 74.8
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.4e-114 416.8 263 75.7
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 1.9e-114 416.4 279 73.1
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 2.4e-114 416.0 297 68.4
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 3.2e-114 415.6 274 71.9
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 3.2e-114 415.6 270 73.0
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 3.2e-114 415.6 297 68.7
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 7.0e-114 414.5 271 72.3
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 7.0e-114 414.5 297 71.0
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 2.0e-113 412.9 297 69.4
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 2.7e-113 412.5 296 69.3
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.7e-113 412.5 297 70.7
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 4.6e-113 411.8 276 71.7
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 4.6e-113 411.8 290 71.0
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 4.6e-113 411.8 297 68.7
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 1.0e-112 410.6 270 73.7
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 2.3e-112 409.5 296 68.9
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 3.0e-112 409.1 289 69.6
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 3.0e-112 409.1 279 70.6
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 3.0e-112 409.1 299 68.6
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 3.0e-112 409.1 296 68.9
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 1.5e-111 406.8 286 66.4
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 1.9e-111 406.4 294 68.7
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 1.9e-111 406.4 286 66.4
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 1.9e-111 406.4 268 71.3
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 2.5e-111 406.0 284 68.3
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 3.3e-111 405.6 277 70.8
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 3.3e-111 405.6 289 69.2
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 4.3e-111 405.2 260 74.2
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 5.6e-111 404.8 288 66.0
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 7.3e-111 404.4 270 69.6
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 9.5e-111 404.1 277 68.6
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 9.5e-111 404.1 207 96.6
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.6e-110 403.3 277 70.4
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 2.1e-110 402.9 293 68.9
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 3.6e-110 402.1 297 67.3
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 8.1e-110 401.0 288 69.4
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 1.1e-109 400.6 299 68.9
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 1.8e-109 399.8 293 66.9
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 3.1e-109 399.1 281 69.8
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 8.9e-109 397.5 299 68.6
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 8.9e-109 397.5 283 67.1
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 8.9e-109 397.5 283 67.1
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 2.0e-108 396.4 291 67.4
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 2.6e-108 396.0 295 64.7
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 9.8e-108 394.0 288 65.3
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 2.9e-107 392.5 287 65.2
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 1.1e-106 390.6 285 67.0
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 4.1e-106 388.7 286 65.4
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 6.0e-105 384.8 286 67.1
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 1.1e-103 380.6 284 69.0
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 1.1e-103 380.6 244 74.2
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 7.3e-103 377.9 284 66.9
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 2.1e-102 376.3 272 66.9
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 2.8e-102 375.9 283 64.7
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 1.1e-101 374.0 236 74.2
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 5.2e-101 371.7 228 76.8
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 5.2e-101 371.7 289 63.7
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.6e-97 360.1 277 66.1
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 1.7e-96 356.7 302 59.3
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 8.6e-96 354.4 235 71.9
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 1.9e-95 353.2 277 65.7
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 8.1e-94 347.8 216 75.5
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 5.2e-93 345.1 383 48.3
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 1.5e-92 343.6 231 71.9
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 2.6e-92 342.8 287 57.5
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 2.2e-91 339.7 291 59.8
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 2.9e-91 339.3 292 61.3
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 3.8e-91 339.0 275 57.8
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 4.9e-91 338.6 291 56.4
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 9.3e-90 334.3 227 67.4
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 3.0e-88 329.3 275 58.5
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 6.6e-88 328.2 271 58.3
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 2.8e-86 322.8 274 59.5
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 2.4e-85 319.7 234 63.2
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 4.0e-85 318.9 292 56.2
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 5.4e-82 308.5 268 56.7
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 7.1e-82 308.1 274 55.5
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 1.2e-81 307.4 275 54.9
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 1.6e-81 307.0 271 56.1
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 1.6e-81 307.0 271 56.1
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 1.6e-81 307.0 271 56.1
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 2.7e-81 306.2 256 56.6
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 3.9e-80 302.4 288 54.5
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 6.7e-80 301.6 279 54.8
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 8.7e-80 301.2 247 59.9
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 2.5e-79 299.7 271 53.5
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 4.3e-79 298.9 200 70.5
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 4.8e-78 295.4 271 53.9
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 2.4e-77 293.1 295 51.2
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 3.0e-72 276.2 292 50.7
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 1.9e-71 273.5 260 55.8
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 5.6e-71 271.9 236 55.5
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 9.6e-71 271.2 231 56.3
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 1.9e-66 256.9 236 53.0
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 2.5e-66 256.5 252 53.2
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 3.4e-60 236.1 209 56.9
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 4.6e-57 225.7 268 48.9
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 8.7e-56 221.5 267 45.3
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 3.4e-52 209.5 155 65.2
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 8.5e-51 204.9 264 42.8
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 1.9e-50 203.8 192 59.9
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 7.9e-41 171.8 153 55.6
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 4.5e-36 156.0 255 34.9
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 1.0e-32 144.8 119 56.3
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 2.0e-31 140.6 111 65.8
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 3.2e-26 123.2 218 32.1
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 7.2e-26 122.1 80 80.0
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 1.4e-21 107.8 58 86.2
FvH4_1g02060 Fragaria vesca HOM05D005541 ORTHO05D006875 2.5e-18 97.1 93 62.4
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 4.2e-18 96.3 114 51.8
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 9.5e-18 95.1 178 33.1
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 1.2e-17 94.7 190 33.2
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 3.4e-15 86.7 43 88.4
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 9.8e-15 85.1 49 83.7
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 5.0e-11 72.8 82 47.6
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 2.9e-06 57.0 245 24.9


User provided reference genes

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