Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 0.0e+00 1190.3 600 100.0
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 0.0e+00 1163.7 600 98.2
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 0.0e+00 1161.7 600 98.0
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 0.0e+00 1118.2 601 94.0
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 4.1e-302 1040.8 597 88.6
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 3.8e-292 1007.7 592 85.8
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 1.6e-290 1002.3 596 85.2
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 3.6e-290 1001.1 600 84.8
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 1.1e-288 996.1 593 85.0
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 2.6e-288 995.0 598 84.8
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 3.7e-287 991.1 594 85.0
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 8.2e-287 989.9 597 83.9
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 1.1e-283 979.5 595 83.7
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 4.0e-281 971.1 597 82.6
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 2.0e-280 968.8 594 83.0
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 7.5e-280 966.8 598 82.1
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 9.7e-280 966.5 595 83.0
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 1.3e-279 966.1 598 83.1
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 1.7e-279 965.7 594 81.8
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 2.8e-279 964.9 593 82.6
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 2.0e-277 958.7 596 82.4
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 4.5e-277 957.6 596 82.2
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 2.2e-276 955.3 602 81.2
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 2.1e-274 948.7 597 80.4
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 2.1e-274 948.7 600 81.2
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 6.1e-274 947.2 596 81.5
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 6.1e-274 947.2 602 80.9
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 8.0e-274 946.8 596 81.2
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 2.3e-273 945.3 596 81.4
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 4.0e-273 944.5 596 81.2
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 1.2e-272 943.0 597 80.6
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 1.5e-272 942.6 610 80.8
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 3.4e-272 941.4 593 80.9
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 4.4e-272 941.0 590 81.2
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 5.7e-272 940.6 596 79.9
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 4.8e-271 937.6 595 80.8
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 4.8e-271 937.6 596 80.9
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 1.4e-270 936.0 596 80.7
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 2.4e-270 935.3 596 80.5
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 7.0e-270 933.7 612 80.2
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 4.5e-269 931.0 598 80.3
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.7e-268 929.1 595 80.0
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 2.9e-268 928.3 583 81.3
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 3.2e-267 924.9 602 78.2
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 3.6e-266 921.4 593 79.3
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 3.6e-266 921.4 581 80.9
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 4.7e-266 921.0 593 79.1
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 1.4e-265 919.5 593 78.9
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.4e-265 919.5 581 80.7
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 3.0e-265 918.3 595 78.7
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 3.0e-265 918.3 600 78.7
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 6.8e-265 917.1 599 78.8
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 6.8e-265 917.1 595 79.2
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 2.6e-264 915.2 593 78.6
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 7.5e-264 913.7 596 78.4
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.7e-263 911.4 601 78.9
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 9.2e-262 906.7 593 79.4
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 9.2e-262 906.7 624 75.6
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 1.2e-261 906.4 600 77.8
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 1.2e-261 906.4 600 78.3
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 1.0e-260 903.3 592 79.1
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 2.9e-260 901.7 593 78.1
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 3.8e-260 901.4 624 75.3
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 2.5e-259 898.7 609 77.3
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.3e-259 898.3 571 80.6
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 7.3e-259 897.1 584 78.8
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 8.0e-258 893.6 590 76.9
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 8.0e-258 893.6 596 76.5
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 1.8e-257 892.5 590 76.9
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.8e-257 892.5 599 77.6
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.8e-257 892.5 579 80.1
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.0e-257 891.7 573 80.5
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 1.4e-254 882.9 600 77.2
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 1.7e-252 875.9 591 76.0
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 3.9e-252 874.8 519 84.8
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 5.0e-252 874.4 595 75.5
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 1.8e-249 865.9 594 74.4
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 8.9e-249 863.6 548 80.8
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 2.0e-248 862.4 555 79.6
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 9.8e-248 860.1 598 74.1
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 2.4e-246 855.5 590 73.6
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.2e-245 853.2 609 73.1
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 1.6e-245 852.8 660 68.0
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 1.3e-244 849.7 596 74.2
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 2.3e-244 849.0 575 76.0
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.5e-243 846.3 599 73.3
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 1.2e-242 843.2 582 73.9
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 8.1e-242 840.5 608 71.5
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 1.1e-241 840.1 580 75.2
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 2.3e-241 839.0 603 72.6
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.5e-240 836.3 573 75.7
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.7e-239 832.8 580 75.0
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 2.9e-239 832.0 577 75.4
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 6.4e-239 830.9 598 73.1
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 5.4e-238 827.8 579 74.8
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 5.4e-238 827.8 414 99.3
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 6.0e-237 824.3 580 74.7
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 1.0e-236 823.5 573 74.9
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 1.3e-236 823.2 561 74.7
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 1.7e-236 822.8 573 75.0
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 3.0e-236 822.0 573 74.9
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 6.6e-236 820.8 558 74.9
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 1.1e-235 820.1 598 71.7
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 1.1e-235 820.1 579 74.1
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 1.9e-235 819.3 577 74.5
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 2.5e-235 818.9 578 74.0
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 2.5e-235 818.9 578 74.0
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 4.7e-234 814.7 576 74.0
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 8.9e-233 810.4 587 71.2
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 4.4e-232 808.1 570 74.0
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 2.9e-231 805.4 578 72.7
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 6.4e-231 804.3 599 69.9
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 2.4e-230 802.4 578 72.3
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 6.0e-229 797.7 602 68.8
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 9.6e-227 790.4 578 71.6
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 3.6e-226 788.5 576 71.7
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 3.6e-226 788.5 576 71.7
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 1.5e-224 783.1 594 71.0
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 9.9e-224 780.4 593 70.8
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 4.9e-223 778.1 580 70.7
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 7.3e-219 764.2 543 75.0
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 5.3e-217 758.1 530 73.2
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 1.3e-215 753.4 533 72.4
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 3.8e-215 751.9 479 80.2
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.1e-213 746.1 594 67.0
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.3e-212 742.7 573 66.7
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.9e-211 739.6 567 68.1
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 4.3e-211 738.4 526 71.3
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.6e-211 738.0 523 73.2
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 6.2e-210 734.6 585 67.7
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 8.4e-207 724.2 600 64.0
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 3.9e-204 715.3 419 85.2
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 8.7e-204 714.1 563 69.4
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 2.4e-201 706.1 526 68.8
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.6e-200 702.6 527 68.1
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.7e-199 699.9 412 84.0
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.9e-199 698.4 527 67.9
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 6.5e-199 698.0 594 63.8
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.1e-198 697.2 527 67.7
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 1.6e-197 693.3 414 84.3
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 2.2e-191 672.9 495 69.5
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.5e-190 668.3 527 65.8
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 1.9e-187 659.8 513 66.9
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 4.1e-185 652.1 528 64.2
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 7.9e-181 637.9 340 96.2
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.4e-177 627.1 449 74.2
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 3.3e-163 579.3 572 54.4
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 6.5e-159 565.1 533 59.8
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.1e-158 564.3 380 75.0
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.5e-155 553.9 475 60.0
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 3.9e-143 512.7 330 79.4
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.9e-129 467.2 457 56.9
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 1.5e-107 394.4 239 81.2
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.0e-71 275.4 157 86.6
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 2.4e-68 264.2 145 91.7
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 1.6e-48 198.4 195 53.8
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 4.0e-47 193.7 195 52.3
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 5.7e-46 189.9 161 59.0
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 3.7e-45 187.2 161 58.4
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 3.8e-42 177.2 98 90.8
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 7.5e-38 162.9 131 64.1
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 1.9e-25 121.7 94 67.0
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.5e-22 112.1 94 61.7
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 5.8e-22 110.2 115 54.8
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 1.7e-21 108.6 60 90.0
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.0e-19 101.7 318 26.4
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 1.1e-17 95.9 126 39.7
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 6.2e-16 90.1 100 55.0
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.1e-15 89.4 280 28.6
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.2e-15 87.0 190 30.5
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 2.0e-14 85.1 81 66.7
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.6e-14 84.7 214 33.2
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 9.8e-14 82.8 86 53.5
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.3e-09 67.4 74 56.8
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 3.6e-08 64.3 54 55.6


User provided reference genes

Program Settings