Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G0128 Fragaria x ananassa HOM05D002239 ORTHO05D002408 1.5e-43 179.1 92 100.0
FvH4_1g30510 Fragaria vesca HOM05D002239 ORTHO05D002408 2.7e-40 168.3 87 97.7
FvH4_c4g00040 Fragaria vesca HOM05D002239 ORTHO05D002408 2.7e-40 168.3 87 97.7
FAN19G0826 Fragaria x ananassa HOM05D002239 ORTHO05D002408 8.2e-37 156.8 100 84.0
FAN23G0440 Fragaria x ananassa HOM05D002239 ORTHO05D002408 1.4e-36 156.0 86 95.3
FAN23G0444 Fragaria x ananassa HOM05D002239 ORTHO05D002408 1.4e-36 156.0 86 95.3
FAN23G0022 Fragaria x ananassa HOM05D002239 ORTHO05D002408 5.3e-36 154.1 86 94.2
FAN23G2187 Fragaria x ananassa HOM05D002239 ORTHO05D002408 5.3e-36 154.1 86 94.2
RcHm_v2.0_Chr1g0332601 Rosa chinensis HOM05D002239 ORTHO05D002408 1.2e-27 126.3 91 79.1
FAN23G2672 Fragaria x ananassa HOM05D002239 ORTHO05D199123 4.2e-25 117.9 75 85.3
FAN19G2099 Fragaria x ananassa HOM05D002239 ORTHO05D002408 8.8e-15 83.6 66 66.7
Lj5g0020912 Lotus japonicus HOM05D002239 ORTHO05D002408 2.2e-13 79.0 89 56.2
Potri.008G021700 Populus trichocarpa HOM05D002239 ORTHO05D002408 8.3e-13 77.0 92 52.2
MD02G1255800 Malus domestica HOM05D002239 ORTHO05D002408 1.8e-12 75.9 99 51.5
Prupe.2G079500 Prunus persica HOM05D002239 ORTHO05D002408 2.4e-12 75.5 100 52.0
MD07G1065400 Malus domestica HOM05D002239 ORTHO05D002408 3.1e-12 75.1 101 50.5
Ciclev10031166m.g Citrus clementina HOM05D002239 ORTHO05D002408 4.1e-12 74.7 78 55.1
CsaV3_5G035550 Cucumis sativus L. HOM05D002239 ORTHO05D002408 7.0e-12 73.9 94 54.3
CsaV3_7G016170 Cucumis sativus L. HOM05D002239 ORTHO05D002408 7.0e-12 73.9 94 54.3
Sp6g38110 Schrenkiella parvula HOM05D002239 ORTHO05D002408 7.0e-12 73.9 93 53.8
CSS0012373 Camellia sinensis var. sinensis HOM05D002239 ORTHO05D002408 9.2e-12 73.6 100 50.0
CSS0035326 Camellia sinensis var. sinensis HOM05D002239 ORTHO05D002408 9.2e-12 73.6 100 50.0
Sabra08G0014700 Salix brachista HOM05D002239 ORTHO05D002408 1.2e-11 73.2 96 52.1
MELO3C012356.2 Cucumis melo HOM05D002239 ORTHO05D002408 1.6e-11 72.8 94 54.3
ClCG05G021720 Citrullus lanatus HOM05D002239 ORTHO05D002408 2.0e-11 72.4 93 53.8
Eucgr.J00993 Eucalyptus grandis HOM05D002239 ORTHO05D002408 2.0e-11 72.4 93 50.5
QL04p044850 Quercus lobata HOM05D002239 ORTHO05D002408 2.0e-11 72.4 97 50.5
GSVIVG01011279001 Vitis vinifera HOM05D002239 ORTHO05D002408 2.0e-11 72.4 102 49.0
Haze_02516 Corylus avellana HOM05D002239 ORTHO05D002408 2.7e-11 72.0 98 52.0
HanXRQChr11g0342211 Helianthus annuus HOM05D002239 ORTHO05D002408 2.7e-11 72.0 106 49.1
MBI01_g04061_MAGBIO Magnolia biondii HOM05D002239 ORTHO05D002408 2.7e-11 72.0 75 54.7
Medtr1g092920 Medicago truncatula HOM05D002239 ORTHO05D002408 2.7e-11 72.0 93 50.5
Psat6g177880 Pisum sativum HOM05D002239 ORTHO05D002408 2.7e-11 72.0 93 52.7
SalBow6G5383 Salvia bowleyana HOM05D002239 ORTHO05D002408 3.5e-11 71.6 103 43.7
Cfa011262 Carpinus fangiana HOM05D002239 ORTHO05D002408 4.5e-11 71.2 102 51.0
AL6G14370 Arabidopsis lyrata HOM05D002239 ORTHO05D002408 5.9e-11 70.9 93 51.6
AT5G04710 Arabidopsis thaliana HOM05D002239 ORTHO05D002408 7.8e-11 70.5 94 50.0
CiPaw.13G038800 Carya illinoinensis HOM05D002239 ORTHO05D002408 7.8e-11 70.5 101 48.5
Dinv09598 Davidia involucrata HOM05D002239 ORTHO05D002408 1.0e-10 70.1 101 50.5
Thhalv10013255m.g Eutrema salsugineum HOM05D002239 ORTHO05D002408 1.0e-10 70.1 89 51.7
PGR044G1463 Punica granatum HOM05D002239 ORTHO05D002408 1.0e-10 70.1 94 51.1
Oeu025591.1 Olea europaea HOM05D002239 ORTHO05D002408 1.3e-10 69.7 102 46.1
Cc02_g09800 Coffea canephora HOM05D002239 ORTHO05D002408 1.7e-10 69.3 112 44.6
Cpa.g.sc183.8 Carica papaya HOM05D002239 ORTHO05D002408 2.9e-10 68.6 94 50.0
Sed0027427 Sechium edule HOM05D002239 ORTHO05D002408 2.9e-10 68.6 96 50.0
vmacro10303 Vaccinium macrocarpon HOM05D002239 ORTHO05D002408 3.8e-10 68.2 101 46.5
Migut.F00908 Erythranthe guttata HOM05D002239 ORTHO05D002408 5.0e-10 67.8 44 68.2
Thecc.10G106700 Theobroma cacao HOM05D002239 ORTHO05D002408 5.0e-10 67.8 95 49.5
Hund06777 Selenicereus undatus HOM05D002239 ORTHO05D002408 6.6e-10 67.4 81 50.6
TAR633G0917 Trochodendron aralioides HOM05D002239 ORTHO05D002408 8.6e-10 67.0 101 48.5
Actinidia31102 Actinidia chinensis HOM05D002239 ORTHO05D002408 1.1e-09 66.6 103 45.6
Duzib106G1599 Durio zibethinus HOM05D002239 ORTHO05D002408 1.1e-09 66.6 89 50.6
Manes.10G058500 Manihot esculenta HOM05D002239 ORTHO05D002408 1.1e-09 66.6 73 47.9
Atru.chr12.1007 Acer truncatum HOM05D002239 ORTHO05D002408 1.9e-09 65.9 81 50.6
C09p72140 Brassica napus HOM05D002239 ORTHO05D002408 2.5e-09 65.5 86 51.2
BolC9t59958H Brassica oleracea HOM05D002239 ORTHO05D002408 2.5e-09 65.5 86 51.2
Nn6g34940 Nelumbo nucifera HOM05D002239 ORTHO05D002408 2.5e-09 65.5 86 46.5
Rhsim09G0142600 Rhododendron simsii HOM05D002239 ORTHO05D002408 2.5e-09 65.5 101 46.5
arahy.Tifrunner.gnm1.ann1.7VH5EY Arachis hypogaea HOM05D002239 ORTHO05D002408 3.3e-09 65.1 85 52.9
Zm00001eb140040 Zea mays HOM05D002239 ORTHO05D002408 3.3e-09 65.1 90 51.1
A10p31450 Brassica napus HOM05D002239 ORTHO05D002408 5.6e-09 64.3 93 45.2
BraA10t45191Z Brassica rapa HOM05D002239 ORTHO05D002408 5.6e-09 64.3 93 45.2
Os01g0967900 Oryza sativa ssp. japonica HOM05D002239 ORTHO05D002408 5.6e-09 64.3 37 78.4
THA.LOC104816465 Tarenaya hassleriana HOM05D002239 ORTHO05D002408 5.6e-09 64.3 102 47.1
COL.COLO4_24561 Corchorus olitorius HOM05D002239 ORTHO05D002408 9.5e-09 63.5 95 50.5
Gohir.A13G010800 Gossypium hirsutum HOM05D002239 ORTHO05D002408 9.5e-09 63.5 90 52.2
Solyc11g007090.3 Solanum lycopersicum HOM05D002239 ORTHO05D002408 9.5e-09 63.5 72 52.8
Sopen11g003010 Solanum pennellii HOM05D002239 ORTHO05D002408 9.5e-09 63.5 105 42.9
TWI38G1828 Tripterygium wilfordii HOM05D002239 ORTHO05D002408 9.5e-09 63.5 47 66.0
Carub.0006s0360 Capsella rubella HOM05D002239 ORTHO05D002408 1.6e-08 62.8 95 49.5
Gorai.013G099300 Gossypium raimondii HOM05D002239 ORTHO05D002408 1.6e-08 62.8 90 51.1
MSTRG.9087 Avicennia marina HOM05D002239 ORTHO05D002408 2.1e-08 62.4 106 40.6
AUR62037671 Chenopodium quinoa HOM05D002239 ORTHO05D002408 2.1e-08 62.4 90 47.8
ECA238G1858 Erigeron canadensis HOM05D002239 ORTHO05D002408 2.1e-08 62.4 83 45.8
Lalb_Chr02g0151721 Lupinus albus HOM05D002239 ORTHO05D002408 2.1e-08 62.4 30 93.3
Peaxi162Scf00173g00520 Petunia axillaris HOM05D002239 ORTHO05D002408 2.1e-08 62.4 35 82.9
EL10Ac4g08662 Beta vulgaris HOM05D002239 ORTHO05D002408 2.8e-08 62.0 76 51.3
Gohir.D13G011500 Gossypium hirsutum HOM05D002239 ORTHO05D002408 2.8e-08 62.0 35 82.9
Gorai.013G012600 Gossypium raimondii HOM05D002239 ORTHO05D002408 2.8e-08 62.0 35 82.9
DCAR_003927 Daucus carota HOM05D002239 ORTHO05D007423 3.6e-08 61.6 61 54.1
PSO339G1708 Papaver somniferum HOM05D002239 ORTHO05D002408 3.6e-08 61.6 91 45.1
PSO384G4039 Papaver somniferum HOM05D002239 ORTHO05D002408 3.6e-08 61.6 64 50.0
Gohir.D12G103200 Gossypium hirsutum HOM05D002239 ORTHO05D002408 4.7e-08 61.2 79 50.6
Sc06g0002530 Simmondsia chinensis HOM05D002239 ORTHO05D002408 4.7e-08 61.2 29 93.1
Aa31LG11G5550 Aethionema arabicum HOM05D002239 ORTHO05D002408 6.1e-08 60.8 92 47.8
Lj3A928T55 Lonicera japonica HOM05D002239 ORTHO05D002408 6.1e-08 60.8 109 43.1
AUR62034501 Chenopodium quinoa HOM05D002239 ORTHO05D002408 8.0e-08 60.5 61 60.7
VMungo0720G1300 Vigna mungo HOM05D002239 ORTHO05D002408 8.0e-08 60.5 80 52.5
BcaC06g32179 Brassica carinata HOM05D002239 ORTHO05D002408 1.0e-07 60.1 86 46.5
Phvul.007G103100 Phaseolus vulgaris HOM05D002239 ORTHO05D002408 1.0e-07 60.1 79 51.9
HPP92_023015 Vanilla planifolia HOM05D002239 ORTHO05D002408 1.0e-07 60.1 84 52.4
TPR.G18691 Trifolium pratense HOM05D002239 ORTHO05D002408 1.4e-07 59.7 50 62.0
Aqoxy4G02805 Aquilegia oxysepala HOM05D002239 ORTHO05D002408 2.3e-07 58.9 82 47.6
ATR0820G033 Amborella trichopoda HOM05D002239 ORTHO05D002408 3.0e-07 58.5 43 58.1
Glyma.20G186700 Glycine max HOM05D002239 ORTHO05D002408 3.0e-07 58.5 76 51.3
CDE06G0398 Ceratophyllum demersum HOM05D002239 ORTHO05D002408 8.9e-07 57.0 83 45.8
Lsat_1_v5_gn_2_104640 Lactuca sativa HOM05D002239 ORTHO05D002408 2.0e-06 55.8 128 35.2
SGA_v2.0_scaffold295G47530 Striga asiatica HOM05D002239 ORTHO05D002408 4.4e-06 54.7 102 41.2
SEGI_20060 Sequoiadendron giganteum HOM05D002239 ORTHO05D002408 7.5e-06 53.9 78 43.6


User provided reference genes

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