Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.9e-172 609.0 295 100.0
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.4e-146 523.1 252 99.2
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.8e-112 408.7 252 81.3
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 9.5e-111 404.1 252 81.3
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 1.6e-110 403.3 252 80.6
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.4e-106 389.4 273 74.0
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 6.6e-96 354.8 253 73.9
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 8.4e-83 311.2 251 64.5
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 6.6e-80 301.6 226 63.7
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 1.5e-79 300.4 229 63.8
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 5.6e-79 298.5 227 63.9
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 1.2e-78 297.4 227 63.4
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 8.1e-78 294.7 225 64.0
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 4.0e-77 292.4 251 59.8
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 4.0e-77 292.4 225 62.7
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 6.9e-77 291.6 225 62.7
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 9.0e-77 291.2 227 63.0
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 3.4e-76 289.3 258 55.8
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 4.4e-76 288.9 225 61.3
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 4.4e-76 288.9 225 61.3
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 4.4e-76 288.9 227 61.7
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 4.4e-76 288.9 224 62.1
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 4.4e-76 288.9 225 61.8
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 9.9e-76 287.7 228 60.1
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 9.9e-76 287.7 223 61.9
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 2.2e-75 286.6 228 60.1
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 2.9e-75 286.2 228 60.1
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 3.8e-75 285.8 223 62.3
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 3.8e-75 285.8 228 60.1
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 8.4e-75 284.6 222 61.3
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 3.2e-74 282.7 224 62.1
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 4.2e-74 282.3 224 62.1
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 5.4e-74 282.0 220 62.7
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 7.1e-74 281.6 225 59.6
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 9.3e-74 281.2 224 61.6
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 9.3e-74 281.2 224 61.2
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 1.2e-73 280.8 220 62.7
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 1.2e-73 280.8 227 60.8
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 1.6e-73 280.4 242 58.3
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 1.6e-73 280.4 226 60.2
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 2.1e-73 280.0 219 61.2
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 2.7e-73 279.6 224 59.8
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 2.7e-73 279.6 225 58.7
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 3.5e-73 279.3 220 62.3
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 3.5e-73 279.3 220 62.3
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 4.6e-73 278.9 224 60.7
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 4.6e-73 278.9 224 60.3
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 6.0e-73 278.5 219 61.2
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 6.0e-73 278.5 227 59.9
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 6.0e-73 278.5 227 59.9
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 1.0e-72 277.7 218 60.1
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 1.0e-72 277.7 227 59.5
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 1.0e-72 277.7 230 59.1
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 1.3e-72 277.3 233 58.4
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 1.7e-72 276.9 229 56.8
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 2.3e-72 276.6 224 60.3
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.3e-72 276.6 225 59.1
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 3.0e-72 276.2 224 59.8
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.9e-72 275.8 227 58.6
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 3.9e-72 275.8 225 59.6
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 5.1e-72 275.4 230 56.5
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 5.1e-72 275.4 230 56.5
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 5.1e-72 275.4 224 59.4
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 8.7e-72 274.6 226 57.5
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 1.1e-71 274.2 227 58.6
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 1.1e-71 274.2 218 61.0
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 1.5e-71 273.9 231 58.4
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.5e-71 273.9 227 58.6
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 1.9e-71 273.5 227 56.8
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 1.9e-71 273.5 223 60.1
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 2.5e-71 273.1 224 58.9
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.5e-71 273.1 227 58.1
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.5e-71 273.1 227 58.1
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 3.3e-71 272.7 238 56.7
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 4.3e-71 272.3 221 58.4
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 5.6e-71 271.9 224 57.1
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 2.8e-70 269.6 221 58.4
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 2.8e-70 269.6 217 57.6
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 2.8e-70 269.6 217 59.0
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 4.8e-70 268.9 221 57.0
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.2e-70 268.5 227 57.3
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 1.4e-69 267.3 221 57.9
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 1.8e-69 266.9 217 58.1
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 4.0e-69 265.8 225 57.8
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 9.0e-69 264.6 217 58.5
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 1.2e-68 264.2 221 57.0
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 2.0e-68 263.5 220 54.5
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 4.5e-68 262.3 239 53.6
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 5.8e-68 261.9 241 53.9
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 7.6e-68 261.5 231 55.0
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 7.6e-68 261.5 224 56.2
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.7e-67 260.4 267 50.2
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 1.2e-65 254.2 210 57.1
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 1.5e-63 247.3 196 59.7
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 4.3e-63 245.7 231 53.7
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 9.6e-63 244.6 228 52.2
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 1.3e-62 244.2 307 45.0
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 2.8e-62 243.0 196 60.2
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 8.1e-62 241.5 194 60.3
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 1.1e-61 241.1 195 59.0
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.4e-61 240.7 206 57.3
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 1.8e-61 240.4 226 50.9
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 1.2e-60 237.7 205 57.6
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.6e-60 236.5 218 52.8
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 4.9e-59 232.3 193 57.0
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 1.1e-58 231.1 223 54.3
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 1.4e-58 230.7 197 58.4
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 1.4e-58 230.7 222 50.0
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 3.2e-58 229.6 223 49.3
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 7.1e-58 228.4 223 55.2
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 7.1e-58 228.4 208 55.8
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 9.3e-58 228.0 191 56.0
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 2.1e-57 226.9 195 58.5
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.7e-57 226.5 217 50.7
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.7e-57 226.5 217 50.7
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 5.1e-56 222.2 232 50.9
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.6e-54 217.2 188 55.9
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 2.8e-54 216.5 190 55.3
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 1.3e-51 207.6 183 55.2
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 7.9e-49 198.4 236 45.3
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 1.8e-45 187.2 218 45.4
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 2.6e-44 183.3 221 41.2
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 3.4e-44 183.0 224 43.3
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 1.6e-41 174.1 219 42.0
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.1e-41 173.7 162 53.7
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 5.1e-40 169.1 88 80.7
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 1.1e-39 167.9 250 38.4
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 9.1e-37 158.3 96 71.9
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 1.1e-34 151.4 240 37.1
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 7.2e-34 148.7 214 35.0
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 7.2e-34 148.7 214 35.0
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 4.4e-31 139.4 162 43.8
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 7.4e-31 138.7 195 39.5
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 3.7e-30 136.3 219 37.9
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 7.0e-29 132.1 185 39.5
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 5.9e-28 129.0 245 31.0
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 1.7e-27 127.5 220 31.4
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 8.5e-27 125.2 220 34.1
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.9e-26 124.0 74 70.3
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 2.1e-25 120.6 222 30.6
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 1.5e-23 114.4 91 58.2
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 3.1e-21 106.7 134 41.8
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 8.5e-11 72.0 46 63.0
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 2.1e-09 67.4 69 46.4
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 1.5e-07 61.2 44 61.4


User provided reference genes

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