Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G0114 Fragaria x ananassa HOM05D006913 ORTHO05D008720 9.0e-125 450.3 230 100.0
FAN19G0677 Fragaria x ananassa HOM05D006913 ORTHO05D008720 9.3e-122 440.3 230 98.3
FAN28G1862 Fragaria x ananassa HOM05D006913 ORTHO05D008720 3.0e-96 355.5 230 84.3
FvH4_1g26590 Fragaria vesca HOM05D006913 ORTHO05D008720 3.3e-95 352.1 230 83.9
RcHm_v2.0_Chr3g0486731 Rosa chinensis HOM05D006913 ORTHO05D008720 1.2e-84 317.0 230 75.7
FAN23G2363 Fragaria x ananassa HOM05D000049 ORTHO05D000027 6.3e-78 294.7 218 76.6
Prupe.3G005300 Prunus persica HOM05D006913 ORTHO05D008720 2.6e-71 272.7 228 66.2
CiPaw.07G121500 Carya illinoinensis HOM05D006913 ORTHO05D008720 2.4e-69 266.2 225 65.8
Cfa004859 Carpinus fangiana HOM05D006913 ORTHO05D008720 7.0e-69 264.6 225 64.9
Haze_05096 Corylus avellana HOM05D006913 ORTHO05D008720 1.3e-67 260.4 225 63.1
MD17G1280100 Malus domestica HOM05D006913 ORTHO05D008720 3.8e-67 258.8 228 64.0
MD09G1287900 Malus domestica HOM05D006913 ORTHO05D008720 2.5e-66 256.1 226 63.7
TWI59G1195 Tripterygium wilfordii HOM05D006913 ORTHO05D008720 3.6e-65 252.3 228 61.8
Manes.01G231800 Manihot esculenta HOM05D006913 ORTHO05D008720 1.0e-64 250.8 227 61.2
QL12p018506 Quercus lobata HOM05D006913 ORTHO05D008720 5.2e-64 248.4 234 61.1
Thecc.01G320200 Theobroma cacao HOM05D006913 ORTHO05D008720 9.8e-63 244.2 224 61.6
Duzib138G1774 Durio zibethinus HOM05D006913 ORTHO05D008720 2.8e-62 242.7 227 60.8
GSVIVG01028181001 Vitis vinifera HOM05D006913 ORTHO05D008720 3.7e-62 242.3 222 58.1
Ciclev10022378m.g Citrus clementina HOM05D006913 ORTHO05D008720 4.9e-62 241.9 224 62.9
Nn3g21840 Nelumbo nucifera HOM05D006913 ORTHO05D008720 6.3e-62 241.5 228 58.3
Hma1.2p1_0408F.1_g146440 Hydrangea macrophylla HOM05D006913 ORTHO05D008720 1.1e-61 240.7 234 58.5
Dinv12109 Davidia involucrata HOM05D006913 ORTHO05D008720 5.4e-61 238.4 229 57.6
Atru.chr5.924 Acer truncatum HOM05D006913 ORTHO05D008720 7.0e-61 238.0 228 59.6
Potri.002G191300 Populus trichocarpa HOM05D006913 ORTHO05D008720 1.2e-60 237.3 223 59.2
TAR362G1022 Trochodendron aralioides HOM05D006913 ORTHO05D008720 1.2e-60 237.3 222 58.6
CSS0007691 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 7.8e-60 234.6 226 55.8
CSS0013168 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 2.9e-59 232.6 226 55.8
Medtr7g109970 Medicago truncatula HOM05D006913 ORTHO05D008720 3.9e-59 232.3 226 57.5
Nitab4.5_0003324g0110 Nicotiana tabacum HOM05D006913 ORTHO05D008720 1.1e-58 230.7 210 60.5
Glyma.03G222100 Glycine max HOM05D006913 ORTHO05D008720 1.9e-58 229.9 220 60.0
PSO170G2504 Papaver somniferum HOM05D006913 ORTHO05D008720 5.6e-58 228.4 190 64.2
Cpa.g.c29544.2 Carica papaya HOM05D006913 ORTHO05D008720 7.3e-58 228.0 224 58.9
Nitab4.5_0000363g0020 Nicotiana tabacum HOM05D006913 ORTHO05D008720 9.5e-58 227.6 210 59.5
Glyma.19G219300 Glycine max HOM05D006913 ORTHO05D008720 2.1e-57 226.5 217 58.1
CiPaw.08G086000 Carya illinoinensis HOM05D006913 ORTHO05D008720 3.6e-57 225.7 222 61.3
Migut.D00043 Erythranthe guttata HOM05D006913 ORTHO05D008720 6.1e-57 224.9 218 58.3
Sed0008492 Sechium edule HOM05D006913 ORTHO05D008720 6.1e-57 224.9 219 57.1
PSO724G1078 Papaver somniferum HOM05D006913 ORTHO05D008720 8.0e-57 224.6 208 59.1
Dinv33147 Davidia involucrata HOM05D006913 ORTHO05D008720 1.4e-56 223.8 233 54.9
VMungo1383G0882 Vigna mungo HOM05D006913 ORTHO05D008720 2.3e-56 223.0 226 55.8
ClCG09G004810 Citrullus lanatus HOM05D006913 ORTHO05D008720 4.0e-56 222.2 198 62.1
Lj1g0024926 Lotus japonicus HOM05D006913 ORTHO05D008720 5.2e-56 221.9 210 60.5
PGR083G1650 Punica granatum HOM05D006913 ORTHO05D008720 1.2e-55 220.7 244 54.9
Aqoxy5G02741 Aquilegia oxysepala HOM05D006913 ORTHO05D008720 2.6e-55 219.5 209 58.9
Lalb_Chr04g0260061 Lupinus albus HOM05D006913 ORTHO05D008720 2.6e-55 219.5 217 58.1
MBI18_g09652_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 5.8e-55 218.4 227 54.2
THA.LOC104801315 Tarenaya hassleriana HOM05D006913 ORTHO05D008720 1.7e-54 216.9 231 55.4
MELO3C023629.2 Cucumis melo HOM05D006913 ORTHO05D008720 3.7e-54 215.7 203 58.1
MBI18_g11536_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 4.9e-54 215.3 224 54.9
TPR.G4038 Trifolium pratense HOM05D006913 ORTHO05D008720 4.9e-54 215.3 186 61.8
CsaV3_7G030270 Cucumis sativus L. HOM05D006913 ORTHO05D008720 1.4e-53 213.8 198 58.6
PGSC0003DMG400007277 Solanum tuberosum HOM05D006913 ORTHO05D008720 1.4e-53 213.8 181 62.4
SalBow3G0392 Salvia bowleyana HOM05D006913 ORTHO05D008720 3.2e-53 212.6 213 57.7
Sopen06g004130 Solanum pennellii HOM05D006913 ORTHO05D008720 4.1e-53 212.2 181 63.0
arahy.Tifrunner.gnm1.ann1.6PPK8V Arachis hypogaea HOM05D006913 ORTHO05D008720 7.0e-53 211.5 212 59.0
Sc05g0000220 Simmondsia chinensis HOM05D006913 ORTHO05D008720 7.0e-53 211.5 192 59.9
Solyc06g009400.3 Solanum lycopersicum HOM05D006913 ORTHO05D008720 9.2e-53 211.1 181 62.4
Sed0005932 Sechium edule HOM05D006913 ORTHO05D008720 1.2e-52 210.7 212 59.4
ATR0693G068 Amborella trichopoda HOM05D006913 ORTHO05D008720 1.6e-52 210.3 176 63.6
Aa31LG5G1440 Aethionema arabicum HOM05D006913 ORTHO05D008720 2.0e-52 209.9 220 54.5
Carub.0006s3531 Capsella rubella HOM05D006913 ORTHO05D008720 4.6e-52 208.8 218 55.5
CAN.G1280.40 Capsicum annuum HOM05D006913 ORTHO05D008720 6.0e-52 208.4 181 63.5
Sabra02G0164300 Salix brachista HOM05D006913 ORTHO05D008720 6.0e-52 208.4 261 50.6
AT4G01900 Arabidopsis thaliana HOM05D006913 ORTHO05D008720 1.0e-51 207.6 225 55.6
MSTRG.21716 Avicennia marina HOM05D006913 ORTHO05D008720 1.7e-51 206.8 216 55.1
Peaxi162Scf00058g00218 Petunia axillaris HOM05D006913 ORTHO05D008720 3.0e-51 206.1 209 55.5
AL6G51370 Arabidopsis lyrata HOM05D006913 ORTHO05D008720 1.1e-50 204.1 190 59.5
Psat3g018680 Pisum sativum HOM05D006913 ORTHO05D008720 1.9e-50 203.4 205 56.1
CDE11G0810 Ceratophyllum demersum HOM05D006913 ORTHO05D008720 3.3e-50 202.6 192 57.8
Thhalv10028983m.g Eutrema salsugineum HOM05D006913 ORTHO05D008720 3.3e-50 202.6 219 54.8
Nitab4.5_0000222g0190 Nicotiana tabacum HOM05D006913 ORTHO05D008720 3.3e-50 202.6 192 59.4
DCAR_002917 Daucus carota HOM05D006913 ORTHO05D008720 5.6e-50 201.8 221 52.9
Rhsim01G0292800 Rhododendron simsii HOM05D006913 ORTHO05D008720 9.5e-50 201.1 235 52.8
Sp6g01770 Schrenkiella parvula HOM05D006913 ORTHO05D008720 1.6e-49 200.3 219 53.4
A03p31400 Brassica napus HOM05D006913 ORTHO05D008720 2.8e-49 199.5 190 59.5
BraA03t12321Z Brassica rapa HOM05D006913 ORTHO05D008720 8.0e-49 198.0 190 58.9
HPP92_002654 Vanilla planifolia HOM05D006913 ORTHO05D008720 8.0e-49 198.0 228 51.3
BcaB01g02398 Brassica carinata HOM05D006913 ORTHO05D008720 1.4e-48 197.2 192 57.8
BcaC01g06792 Brassica carinata HOM05D006913 ORTHO05D008720 4.0e-48 195.7 164 64.6
BolC3t16112H Brassica oleracea HOM05D006913 ORTHO05D008720 4.0e-48 195.7 164 64.6
C03p38310 Brassica napus HOM05D006913 ORTHO05D008720 5.2e-48 195.3 191 58.6
arahy.Tifrunner.gnm1.ann1.IRZ7G5 Arachis hypogaea HOM05D006913 ORTHO05D008720 2.6e-47 193.0 210 55.7
unitig_578.g16634 Utricularia gibba HOM05D006913 ORTHO05D008720 7.5e-47 191.4 228 49.6
BcaB01g02393 Brassica carinata HOM05D006913 ORTHO05D008720 8.3e-46 188.0 156 65.4
Cc01_g21970 Coffea canephora HOM05D006913 ORTHO05D008720 3.2e-45 186.0 163 63.2
Os05g0133100 Oryza sativa ssp. japonica HOM05D006913 ORTHO05D008720 4.1e-45 185.7 171 59.1
Eucgr.H00899 Eucalyptus grandis HOM05D006913 ORTHO05D008720 9.5e-42 174.5 228 48.7
Pp3c4_15530 Physcomitrium patens HOM05D006913 ORTHO05D008720 1.2e-41 174.1 161 58.4
vmacro15097 Vaccinium macrocarpon HOM05D006913 ORTHO05D008720 3.6e-41 172.6 244 46.3
COL.COLO4_23180 Corchorus olitorius HOM05D006913 ORTHO05D008720 6.8e-40 168.3 113 78.8
Mapoly0061s0127 Marchantia polymorpha HOM05D006913 ORTHO05D008720 6.8e-40 168.3 159 56.0
Ca_09230_v3 Cicer arietinum L. HOM05D006913 ORTHO05D008720 3.7e-38 162.5 103 80.6
Solyc01g015000.3 Solanum lycopersicum HOM05D006913 ORTHO05D008720 1.9e-37 160.2 134 65.7
SGA_v2.0_scaffold80G25710 Striga asiatica HOM05D006913 ORTHO05D008720 3.5e-36 156.0 170 54.7
Lj1C13T3 Lonicera japonica HOM05D006913 ORTHO05D008720 6.0e-36 155.2 105 79.0
AagrBONN_evm.TU.Sc2ySwM_228.182 Anthoceros agrestis HOM05D006913 ORTHO05D008720 7.8e-36 154.8 119 66.4
AUR62024592 Chenopodium quinoa HOM05D006913 ORTHO05D008720 1.0e-35 154.5 114 71.1
SMO364G0946 Selaginella moellendorffii HOM05D006913 ORTHO05D008720 1.4e-32 144.1 109 67.0
Phvul.001G215500 Phaseolus vulgaris HOM05D006913 ORTHO05D008720 4.0e-32 142.5 156 51.3
SEGI_19322 Sequoiadendron giganteum HOM05D006913 ORTHO05D008720 2.6e-31 139.8 172 47.7
Oeu038057.1 Olea europaea HOM05D006913 ORTHO05D008720 5.8e-31 138.7 222 40.5
Duzib211G0548 Durio zibethinus HOM05D006913 ORTHO05D008720 9.2e-29 131.3 115 60.9
Cre07.g357350 Chlamydomonas reinhardtii HOM05D006913 ORTHO05D008720 3.9e-27 125.9 182 42.9
GSVIVG01010608001 Vitis vinifera HOM05D006913 ORTHO05D008720 1.5e-26 124.0 75 84.0
GSVIVG01037028001 Vitis vinifera HOM05D006913 ORTHO05D008720 1.5e-26 124.0 75 84.0
CARHR249910 Cardamine hirsuta HOM05D006913 ORTHO05D008720 4.3e-26 122.5 85 76.5
Hund09668 Selenicereus undatus HOM05D006913 ORTHO05D008720 1.3e-25 120.9 198 42.9
Eucgr.L01805 Eucalyptus grandis HOM05D006913 ORTHO05D008720 3.4e-23 112.8 161 43.5
MCO04G045 Micromonas commoda HOM05D006913 ORTHO05D008720 4.4e-23 112.5 121 53.7
Hma1.2p1_3252F.1_g334540 Hydrangea macrophylla HOM05D006913 ORTHO05D008720 6.0e-20 102.1 141 46.8
Nitab4.5_0001013g0020 Nicotiana tabacum HOM05D006913 ORTHO05D008720 1.3e-19 100.9 113 49.6
HPP92_027923 Vanilla planifolia HOM05D006913 ORTHO05D008720 3.9e-19 99.4 68 76.5
HPP92_027922 Vanilla planifolia HOM05D006913 ORTHO05D008720 1.2e-15 87.8 127 41.7
Haze_27360 Corylus avellana HOM05D006913 ORTHO05D008720 6.0e-12 75.5 110 36.4
C09p01450 Brassica napus HOM05D006913 ORTHO05D008720 1.3e-09 67.8 39 76.9
BolC9t53077H Brassica oleracea HOM05D006913 ORTHO05D008720 1.3e-09 67.8 39 76.9


User provided reference genes

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