Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G0112 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.3e-176 622.9 300 100.0
FAN26G2468 Fragaria x ananassa HOM05D003687 ORTHO05D004571 3.4e-156 555.1 310 90.0
FAN28G1596 Fragaria x ananassa HOM05D003687 ORTHO05D004571 4.9e-155 551.2 310 89.4
FAN23G1902 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.4e-154 549.7 310 89.0
FvH4_1g10530 Fragaria vesca HOM05D003687 ORTHO05D004571 4.6e-153 544.7 310 87.7
FAN19G1222 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.0e-152 543.5 310 87.4
RcHm_v2.0_Chr2g0097441 Rosa chinensis HOM05D003687 ORTHO05D004571 2.8e-150 535.4 310 86.8
Prupe.7G180700 Prunus persica HOM05D003687 ORTHO05D004571 3.9e-144 515.0 310 82.9
MD15G1233200 Malus domestica HOM05D003687 ORTHO05D004571 3.6e-142 508.4 311 82.0
Lalb_Chr16g0377261 Lupinus albus HOM05D003687 ORTHO05D004571 4.0e-141 505.0 311 80.4
MD02G1119200 Malus domestica HOM05D003687 ORTHO05D004571 4.0e-141 505.0 311 81.7
TPR.G25131 Trifolium pratense HOM05D003687 ORTHO05D004571 9.9e-140 500.4 312 80.1
PSO339G2900 Papaver somniferum HOM05D003687 ORTHO05D004571 3.8e-139 498.4 312 79.5
Lj2g0026838 Lotus japonicus HOM05D003687 ORTHO05D004571 2.4e-138 495.7 311 79.1
PSO063G5755 Papaver somniferum HOM05D003687 ORTHO05D004571 2.4e-138 495.7 312 78.8
arahy.Tifrunner.gnm1.ann1.XW297T Arachis hypogaea HOM05D003687 ORTHO05D004571 3.2e-138 495.4 310 79.7
arahy.Tifrunner.gnm1.ann1.ZVTH8F Arachis hypogaea HOM05D003687 ORTHO05D004571 3.2e-138 495.4 310 79.7
Lalb_Chr05g0211911 Lupinus albus HOM05D003687 ORTHO05D004571 4.2e-138 495.0 311 78.8
THA.LOC104819724 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 7.1e-138 494.2 311 79.1
MELO3C013732.2 Cucumis melo HOM05D003687 ORTHO05D004571 9.3e-138 493.8 313 77.3
Lalb_Chr09g0321291 Lupinus albus HOM05D003687 ORTHO05D004571 9.3e-138 493.8 311 78.8
Manes.02G112800 Manihot esculenta HOM05D003687 ORTHO05D004571 9.3e-138 493.8 310 78.7
QL06p053788 Quercus lobata HOM05D003687 ORTHO05D004571 9.3e-138 493.8 310 79.7
Cpa.g.sc535.4 Carica papaya HOM05D003687 ORTHO05D004571 1.6e-137 493.0 312 79.5
Manes.01G153800 Manihot esculenta HOM05D003687 ORTHO05D004571 2.1e-137 492.7 310 79.4
CsaV3_3G000370 Cucumis sativus L. HOM05D003687 ORTHO05D004571 2.7e-137 492.3 313 77.3
QL06p052789 Quercus lobata HOM05D003687 ORTHO05D004571 2.7e-137 492.3 310 79.4
CiPaw.07G004000 Carya illinoinensis HOM05D003687 ORTHO05D004571 3.5e-137 491.9 310 79.7
AT4G35630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 4.6e-137 491.5 309 78.3
Atru.chr3.957 Acer truncatum HOM05D003687 ORTHO05D004571 6.0e-137 491.1 312 78.8
Atru.chr3.969 Acer truncatum HOM05D003687 ORTHO05D004571 6.0e-137 491.1 312 78.8
ClCG10G000330 Citrullus lanatus HOM05D003687 ORTHO05D004571 6.0e-137 491.1 313 77.3
THA.LOC104807434 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 7.8e-137 490.7 311 79.1
Medtr8g074010 Medicago truncatula HOM05D003687 ORTHO05D004571 1.3e-136 490.0 312 77.6
CANSAT25G3704 Cannabis sativa HOM05D003687 ORTHO05D004571 2.3e-136 489.2 312 78.2
VMungo1215G1127 Vigna mungo HOM05D003687 ORTHO05D004571 2.3e-136 489.2 309 76.7
Cfa007065 Carpinus fangiana HOM05D003687 ORTHO05D004571 3.9e-136 488.4 310 77.7
Hma1.2p1_0300F.1_g118150 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 3.9e-136 488.4 312 79.2
Sed0005072 Sechium edule HOM05D003687 ORTHO05D004571 3.9e-136 488.4 313 77.0
Carub.0003s3171 Capsella rubella HOM05D003687 ORTHO05D004571 5.1e-136 488.0 311 78.5
Phvul.002G115000 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 5.1e-136 488.0 309 76.7
Sp7g33400 Schrenkiella parvula HOM05D003687 ORTHO05D004571 5.1e-136 488.0 311 77.8
CSS0042676 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 6.6e-136 487.6 312 78.5
Ca_24964_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 1.1e-135 486.9 314 77.7
Thhalv10025259m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 1.1e-135 486.9 311 77.5
TWI53G1012 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 1.1e-135 486.9 311 78.5
Thhalv10023021m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 1.5e-135 486.5 311 78.1
PGR119G1501 Punica granatum HOM05D003687 ORTHO05D004571 2.5e-135 485.7 311 76.8
Sp3g30960 Schrenkiella parvula HOM05D003687 ORTHO05D004571 2.5e-135 485.7 311 78.1
Actinidia17383 Actinidia chinensis HOM05D003687 ORTHO05D004571 3.3e-135 485.3 292 81.2
AL7G15520 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 3.3e-135 485.3 311 77.2
Lsat_1_v5_gn_8_23040 Lactuca sativa HOM05D003687 ORTHO05D004571 4.3e-135 485.0 312 77.9
CARHR243980 Cardamine hirsuta HOM05D003687 ORTHO05D004571 5.6e-135 484.6 309 77.3
Sabra05G0082600 Salix brachista HOM05D003687 ORTHO05D004571 5.6e-135 484.6 309 77.0
TPR.G18309 Trifolium pratense HOM05D003687 ORTHO05D004571 5.6e-135 484.6 312 77.2
Eucgr.I02231 Eucalyptus grandis HOM05D003687 ORTHO05D004571 7.3e-135 484.2 311 76.8
CiPaw.08G180600 Carya illinoinensis HOM05D003687 ORTHO05D004571 9.6e-135 483.8 310 78.1
Ca_19449_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 1.3e-134 483.4 311 76.5
SalBow3G3833 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.3e-134 483.4 312 77.6
TAR628G0600 Trochodendron aralioides HOM05D003687 ORTHO05D004571 1.6e-134 483.0 312 77.9
BcaC04g22959 Brassica carinata HOM05D003687 ORTHO05D004571 2.1e-134 482.6 311 75.9
C09p13480 Brassica napus HOM05D003687 ORTHO05D004571 2.1e-134 482.6 311 75.9
BolC9t54238H Brassica oleracea HOM05D003687 ORTHO05D004571 2.1e-134 482.6 311 75.9
Nitab4.5_0000702g0080 Nicotiana tabacum HOM05D003687 ORTHO05D004571 2.1e-134 482.6 312 77.2
Cc07_g11670 Coffea canephora HOM05D003687 ORTHO05D004571 2.8e-134 482.3 313 77.3
AT2G17630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 3.6e-134 481.9 311 77.5
Aqoxy1G00525 Aquilegia oxysepala HOM05D003687 ORTHO05D004571 4.8e-134 481.5 312 77.6
BcaB07g31719 Brassica carinata HOM05D003687 ORTHO05D004571 4.8e-134 481.5 311 76.2
BraA09t36786Z Brassica rapa HOM05D003687 ORTHO05D004571 4.8e-134 481.5 312 75.6
Carub.0007s0467 Capsella rubella HOM05D003687 ORTHO05D004571 4.8e-134 481.5 311 76.8
Glyma.02G041900 Glycine max HOM05D003687 ORTHO05D004571 4.8e-134 481.5 312 76.3
Psat0s1725g0080 Pisum sativum HOM05D003687 ORTHO05D004571 4.8e-134 481.5 312 77.2
MSTRG.3621 Avicennia marina HOM05D003687 ORTHO05D004571 6.2e-134 481.1 313 77.3
A09p11460 Brassica napus HOM05D003687 ORTHO05D004571 8.1e-134 480.7 312 75.6
Peaxi162Scf01446g00005 Petunia axillaris HOM05D003687 ORTHO05D004571 8.1e-134 480.7 311 76.8
Potri.005G099900 Populus trichocarpa HOM05D003687 ORTHO05D004571 1.1e-133 480.3 309 76.4
unitig_699.g19680 Utricularia gibba HOM05D003687 ORTHO05D004571 1.1e-133 480.3 312 76.6
Psat2g150440 Pisum sativum HOM05D003687 ORTHO05D004571 1.4e-133 479.9 314 76.8
TAR376G1076 Trochodendron aralioides HOM05D003687 ORTHO05D004571 1.4e-133 479.9 312 78.2
Ciclev10025659m.g Citrus clementina HOM05D003687 ORTHO05D004571 2.4e-133 479.2 312 76.3
Glyma.01G159800 Glycine max HOM05D003687 ORTHO05D004571 2.4e-133 479.2 310 75.8
AL3G50590 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 3.1e-133 478.8 311 77.2
Oeu028610.1 Olea europaea HOM05D003687 ORTHO05D004571 4.0e-133 478.4 312 76.6
Thecc.01G007000 Theobroma cacao HOM05D003687 ORTHO05D004571 4.0e-133 478.4 312 76.3
PGSC0003DMG400001524 Solanum tuberosum HOM05D003687 ORTHO05D004571 5.3e-133 478.0 312 76.9
BolC3t20334H Brassica oleracea HOM05D003687 ORTHO05D004571 9.0e-133 477.2 311 75.9
TWI09G0502 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 9.0e-133 477.2 311 77.2
Solyc02g082830.3 Solanum lycopersicum HOM05D003687 ORTHO05D004571 1.5e-132 476.5 312 76.6
Sopen02g027630 Solanum pennellii HOM05D003687 ORTHO05D004571 1.5e-132 476.5 312 76.6
BcaC01g00508 Brassica carinata HOM05D003687 ORTHO05D004571 2.0e-132 476.1 311 75.9
C03p80790 Brassica napus HOM05D003687 ORTHO05D004571 2.0e-132 476.1 311 75.9
Rhsim10G0197900 Rhododendron simsii HOM05D003687 ORTHO05D004571 2.0e-132 476.1 312 76.3
CAN.G890.77 Capsicum annuum HOM05D003687 ORTHO05D004571 2.6e-132 475.7 311 75.9
Lj4P233T12 Lonicera japonica HOM05D003687 ORTHO05D004571 3.4e-132 475.3 311 75.9
MBI05_g40602_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 3.4e-132 475.3 311 75.6
Aa31LG8G14900 Aethionema arabicum HOM05D003687 ORTHO05D004571 4.4e-132 474.9 311 75.9
BraA08t34133Z Brassica rapa HOM05D003687 ORTHO05D004571 5.8e-132 474.6 311 75.6
Glyma.11G084400 Glycine max HOM05D003687 ORTHO05D004571 5.8e-132 474.6 311 76.2
A08p21800 Brassica napus HOM05D003687 ORTHO05D004571 9.9e-132 473.8 311 75.9
Migut.H02194 Erythranthe guttata HOM05D003687 ORTHO05D004571 1.7e-131 473.0 313 76.4
Duzib147G1246 Durio zibethinus HOM05D003687 ORTHO05D004571 2.9e-131 472.2 312 75.3
vmacro20525 Vaccinium macrocarpon HOM05D003687 ORTHO05D004571 3.8e-131 471.9 320 74.4
Hma1.2p1_2491F.1_g323220 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 6.4e-131 471.1 313 76.4
BcaB03g12420 Brassica carinata HOM05D003687 ORTHO05D004571 1.1e-130 470.3 311 75.2
COL.COLO4_22538 Corchorus olitorius HOM05D003687 ORTHO05D004571 1.1e-130 470.3 312 75.3
SGA_v2.0_scaffold2G00959 Striga asiatica HOM05D003687 ORTHO05D004571 1.9e-130 469.5 312 75.0
Gorai.001G198400 Gossypium raimondii HOM05D003687 ORTHO05D004571 3.2e-130 468.8 312 75.0
DCAR_030822 Daucus carota HOM05D003687 ORTHO05D004571 4.2e-130 468.4 312 75.6
Gohir.D07G177500 Gossypium hirsutum HOM05D003687 ORTHO05D004571 5.4e-130 468.0 312 75.0
Gohir.A07G170700 Gossypium hirsutum HOM05D003687 ORTHO05D004571 9.3e-130 467.2 312 75.0
Duzib264G0784 Durio zibethinus HOM05D003687 ORTHO05D004571 1.6e-129 466.5 309 75.1
Aa31LG6G12590 Aethionema arabicum HOM05D003687 ORTHO05D004571 7.9e-129 464.2 309 74.8
SGA_v2.0_scaffold108G30984 Striga asiatica HOM05D003687 ORTHO05D004571 5.1e-128 461.5 312 73.7
CDE10G0671 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 1.1e-127 460.3 312 74.0
SHI29483 Sapria himalayana HOM05D003687 ORTHO05D004571 4.3e-127 458.4 311 72.3
Sc07g0001320 Simmondsia chinensis HOM05D003687 ORTHO05D004571 7.3e-127 457.6 311 71.7
CDE10G0952 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 1.3e-126 456.8 312 73.7
AUR62029452 Chenopodium quinoa HOM05D003687 ORTHO05D004571 2.1e-126 456.1 314 73.6
VMungo0251G3174 Vigna mungo HOM05D003687 ORTHO05D004571 1.8e-125 453.0 315 71.7
Phvul.003G269100 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 5.3e-125 451.4 315 71.4
Ah.03g148400 Amaranthus hybridus HOM05D003687 ORTHO05D004571 2.9e-123 445.7 318 71.1
ATR0329G002 Amborella trichopoda HOM05D003687 ORTHO05D004571 2.9e-123 445.7 312 71.5
EL10Ac6g15469 Beta vulgaris HOM05D003687 ORTHO05D004571 7.1e-122 441.0 318 70.4
SEGI_09550 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 7.9e-121 437.6 311 69.5
HPP92_002248 Vanilla planifolia HOM05D003687 ORTHO05D004571 7.9e-121 437.6 311 69.1
Mapoly0033s0118 Marchantia polymorpha HOM05D003687 ORTHO05D004571 4.6e-113 411.8 313 65.5
Pp3c9_15390 Physcomitrium patens HOM05D003687 ORTHO05D004571 1.3e-112 410.2 310 64.8
SMO259G0019 Selaginella moellendorffii HOM05D003687 ORTHO05D004571 7.4e-111 404.4 316 64.6
Os03g0157900 Oryza sativa ssp. japonica HOM05D003687 ORTHO05D004571 5.3e-109 398.3 313 63.9
CBR_g34176 Chara braunii HOM05D003687 ORTHO05D004571 7.6e-108 394.4 311 62.7
CBR_g54970 Chara braunii HOM05D003687 ORTHO05D004571 1.7e-107 393.3 311 62.7
Zm00001eb004390 Zea mays HOM05D003687 ORTHO05D004571 3.8e-107 392.1 314 63.1
Haze_03674 Corylus avellana HOM05D003687 ORTHO05D004571 9.1e-93 344.4 310 60.6
Cre07.g331550 Chlamydomonas reinhardtii HOM05D003687 ORTHO05D004571 1.3e-91 340.5 309 56.3
PRCOL_00000472 Prasinoderma coloniale HOM05D003687 ORTHO05D004571 3.3e-87 325.9 306 52.9
ECA233G3718 Erigeron canadensis HOM05D003687 ORTHO05D004571 5.9e-84 315.1 281 58.7
MCO11G731 Micromonas commoda HOM05D003687 ORTHO05D004571 4.7e-81 305.4 307 50.5
Nitab4.5_0002967g0020 Nicotiana tabacum HOM05D003687 ORTHO05D004571 2.8e-78 296.2 207 73.4
MBI05_g22625_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 5.5e-74 282.0 302 55.3
QL06p053814 Quercus lobata HOM05D003687 ORTHO05D004571 5.5e-74 282.0 221 68.3
GSVIVG01006497001 Vitis vinifera HOM05D003687 ORTHO05D004571 3.0e-72 276.2 312 52.9
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 1.4e-69 267.3 217 65.0
HanXRQChr09g0253801 Helianthus annuus HOM05D003687 ORTHO05D004571 6.1e-65 251.9 152 78.9
HanXRQChr02g0050301 Helianthus annuus HOM05D003687 ORTHO05D004571 1.8e-64 250.4 152 78.3
Haze_26462 Corylus avellana HOM05D003687 ORTHO05D004571 2.0e-63 246.9 312 43.6
Dinv40174 Davidia involucrata HOM05D003687 ORTHO05D004571 5.9e-60 235.3 128 87.5
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 2.0e-55 220.3 222 56.3
RcHm_v2.0_Chr2g0097551 Rosa chinensis HOM05D003687 ORTHO05D004571 4.1e-53 212.6 147 72.1
BcaB07g31718 Brassica carinata HOM05D003687 ORTHO05D004571 5.4e-53 212.2 164 65.2
A06p33750 Brassica napus HOM05D003687 ORTHO05D004571 2.0e-47 193.7 164 66.5
SalBow2G1655 Salvia bowleyana HOM05D003687 ORTHO05D004571 5.4e-45 185.7 228 48.7
QL06p053818 Quercus lobata HOM05D003687 ORTHO05D004571 2.3e-43 180.3 103 85.4
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 7.3e-42 175.3 103 81.6
PRCOL_00006694 Prasinoderma coloniale HOM05D003687 ORTHO05D049027 1.1e-37 161.4 308 33.1
CSS0005640 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 2.4e-37 160.2 156 58.3
MCO03G424 Micromonas commoda HOM05D003687 ORTHO05D049027 2.3e-35 153.7 297 31.6
ATR0553G001 Amborella trichopoda HOM05D003687 ORTHO05D004571 5.1e-35 152.5 156 57.1
Cfa023378 Carpinus fangiana HOM05D003687 ORTHO05D004571 8.6e-35 151.8 381 28.9
Dinv34003 Davidia involucrata HOM05D003687 ORTHO05D004571 1.2e-31 141.4 89 79.8
SEGI_08881 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 1.7e-30 137.5 280 33.2
Dinv09926 Davidia involucrata HOM05D003687 ORTHO05D004571 3.2e-29 133.3 76 85.5
Dinv17413 Davidia involucrata HOM05D003687 ORTHO05D004571 3.2e-29 133.3 76 85.5
Dinv29031 Davidia involucrata HOM05D003687 ORTHO05D034002 3.0e-27 126.7 150 50.7
Dinv37828 Davidia involucrata HOM05D003687 ORTHO05D004571 3.0e-27 126.7 76 82.9
SalBow8G1645 Salvia bowleyana HOM05D003687 ORTHO05D004571 9.6e-26 121.7 108 58.3
BcaB07g31714 Brassica carinata HOM05D003687 ORTHO05D004571 2.8e-25 120.2 109 58.7
SalBow7G3504 Salvia bowleyana HOM05D003687 ORTHO05D004571 2.7e-20 103.6 97 57.7
SalBow6G6332 Salvia bowleyana HOM05D003687 ORTHO05D004571 7.8e-20 102.1 124 49.2
SalBow6G6204 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.8e-16 90.9 48 83.3
ATR0763G123 Amborella trichopoda HOM05D003687 ORTHO05D004571 4.5e-15 86.3 57 71.9
ATR0329G021 Amborella trichopoda HOM05D003687 ORTHO05D004571 4.9e-14 82.8 55 74.5
Dinv18127 Davidia involucrata HOM05D003687 ORTHO05D043272 4.9e-14 82.8 45 91.1
ATR0749G088 Amborella trichopoda HOM05D003687 ORTHO05D004571 1.4e-13 81.3 57 68.4
BraA06t26310Z Brassica rapa HOM05D003687 ORTHO05D043272 1.4e-13 81.3 51 90.2
SalBow6G4873 Salvia bowleyana HOM05D003687 ORTHO05D004571 3.0e-11 73.6 59 61.0
RcHm_v2.0_Chr2g0097541 Rosa chinensis HOM05D003687 ORTHO05D004571 5.1e-11 72.8 37 97.3
ATR0208G001 Amborella trichopoda HOM05D003687 ORTHO05D067511 1.3e-09 68.2 49 71.4
Solyc04g150135.1 Solanum lycopersicum HOM05D001565 ORTHO05D001725 2.8e-09 67.0 42 76.2
SalBow6G6873 Salvia bowleyana HOM05D000052 ORTHO05D000046 2.4e-08 63.9 108 36.1
Sopen04g021110 Solanum pennellii HOM05D001565 ORTHO05D018129 2.4e-08 63.9 37 86.5
TAR371G0743 Trochodendron aralioides HOM05D003687 ORTHO05D006936 3.1e-08 63.5 60 55.0
Solyc04g050430.1 Solanum lycopersicum HOM05D001565 ORTHO05D004571 9.0e-08 62.0 38 81.6
Solyc04g050403.1 Solanum lycopersicum HOM05D001565 ORTHO05D004571 1.5e-07 61.2 40 80.0
BolC3t18117H Brassica oleracea HOM05D003687 ORTHO05D004571 9.9e-07 58.5 34 82.4


User provided reference genes

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