Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G0060 Fragaria x ananassa HOM05D007087 ORTHO05D008968 7.6e-62 240.4 124 100.0
FvH4_1g19040 Fragaria vesca HOM05D007087 ORTHO05D008968 1.4e-39 166.4 86 100.0
FAN23G1122 Fragaria x ananassa HOM05D007087 ORTHO05D008968 1.4e-39 166.4 86 100.0
FAN28G2302 Fragaria x ananassa HOM05D007087 ORTHO05D008968 1.4e-39 166.4 86 100.0
RcHm_v2.0_Chr2g0110041 Rosa chinensis HOM05D007087 ORTHO05D008968 1.4e-39 166.4 86 100.0
MD01G1044400 Malus domestica HOM05D007087 ORTHO05D008968 5.3e-39 164.5 86 98.8
Prupe.6G209300 Prunus persica HOM05D007087 ORTHO05D008968 5.3e-39 164.5 86 98.8
QL06p037367 Quercus lobata HOM05D007087 ORTHO05D008968 5.9e-38 161.0 84 98.8
Cfa006833 Carpinus fangiana HOM05D007087 ORTHO05D008968 1.3e-37 159.8 84 97.6
Hma1.2p1_0080F.1_g042080 Hydrangea macrophylla HOM05D007087 ORTHO05D008968 1.3e-37 159.8 84 97.6
CSS0037594 Camellia sinensis var. sinensis HOM05D007087 ORTHO05D008968 1.7e-37 159.5 83 98.8
CSS0044951 Camellia sinensis var. sinensis HOM05D007087 ORTHO05D008968 1.7e-37 159.5 83 98.8
COL.COLO4_11683 Corchorus olitorius HOM05D007087 ORTHO05D008968 3.8e-37 158.3 84 96.4
PGR102G1803 Punica granatum HOM05D007087 ORTHO05D008968 3.8e-37 158.3 83 97.6
TWI77G0839 Tripterygium wilfordii HOM05D007087 ORTHO05D008968 3.8e-37 158.3 84 96.4
Gorai.007G230500 Gossypium raimondii HOM05D007087 ORTHO05D008968 5.0e-37 157.9 85 94.1
TAR376G1208 Trochodendron aralioides HOM05D007087 ORTHO05D008968 6.5e-37 157.5 83 96.4
Ca_13466_v3 Cicer arietinum L. HOM05D007087 ORTHO05D008968 8.5e-37 157.1 84 96.4
Glyma.01G020200 Glycine max HOM05D007087 ORTHO05D008968 8.5e-37 157.1 84 96.4
Gohir.A11G208700 Gossypium hirsutum HOM05D007087 ORTHO05D008968 8.5e-37 157.1 84 95.2
Gohir.D11G214800 Gossypium hirsutum HOM05D007087 ORTHO05D008968 8.5e-37 157.1 84 95.2
Lj2g0010143 Lotus japonicus HOM05D007087 ORTHO05D008968 8.5e-37 157.1 84 96.4
Medtr5g030935 Medicago truncatula HOM05D007087 ORTHO05D008968 8.5e-37 157.1 84 96.4
Phvul.002G143500 Phaseolus vulgaris HOM05D007087 ORTHO05D008968 8.5e-37 157.1 84 96.4
Psat2g134040 Pisum sativum HOM05D007087 ORTHO05D008968 8.5e-37 157.1 84 96.4
Duzib264G0202 Durio zibethinus HOM05D007087 ORTHO05D008968 1.1e-36 156.8 83 96.4
CiPaw.07G042900 Carya illinoinensis HOM05D007087 ORTHO05D008968 1.4e-36 156.4 84 96.4
TWI53G1267 Tripterygium wilfordii HOM05D007087 ORTHO05D008968 1.4e-36 156.4 84 96.4
TPR.G37071 Trifolium pratense HOM05D007087 ORTHO05D008968 1.9e-36 156.0 84 95.2
Dinv27003 Davidia involucrata HOM05D007087 ORTHO05D008968 2.5e-36 155.6 83 95.2
Actinidia16395 Actinidia chinensis HOM05D007087 ORTHO05D008968 3.2e-36 155.2 83 95.2
Glyma.09G202200 Glycine max HOM05D007087 ORTHO05D008968 3.2e-36 155.2 84 95.2
Sc16g0000740 Simmondsia chinensis HOM05D007087 ORTHO05D008968 3.2e-36 155.2 83 95.2
arahy.Tifrunner.gnm1.ann1.6G1T2R Arachis hypogaea HOM05D007087 ORTHO05D008968 4.2e-36 154.8 84 95.2
arahy.Tifrunner.gnm1.ann1.NU08EI Arachis hypogaea HOM05D007087 ORTHO05D008968 4.2e-36 154.8 84 95.2
Duzib147G0219 Durio zibethinus HOM05D007087 ORTHO05D008968 4.2e-36 154.8 83 95.2
Lsat_1_v5_gn_4_156341 Lactuca sativa HOM05D007087 ORTHO05D008968 4.2e-36 154.8 83 94.0
CiPaw.08G145100 Carya illinoinensis HOM05D007087 ORTHO05D008968 5.5e-36 154.5 84 94.0
Thecc.01G084300 Theobroma cacao HOM05D007087 ORTHO05D008968 5.5e-36 154.5 84 94.0
Atru.chr3.1157 Acer truncatum HOM05D007087 ORTHO05D008968 7.2e-36 154.1 83 95.2
Atru.chr3.1173 Acer truncatum HOM05D007087 ORTHO05D008968 7.2e-36 154.1 83 95.2
Eucgr.I00598 Eucalyptus grandis HOM05D007087 ORTHO05D008968 7.2e-36 154.1 83 95.2
Eucgr.I00599 Eucalyptus grandis HOM05D007087 ORTHO05D008968 7.2e-36 154.1 83 95.2
MBI16_g36494_MAGBIO Magnolia biondii HOM05D007087 ORTHO05D008968 7.2e-36 154.1 84 92.9
vmacro18037 Vaccinium macrocarpon HOM05D007087 ORTHO05D008968 7.2e-36 154.1 83 94.0
Ciclev10027006m.g Citrus clementina HOM05D007087 ORTHO05D008968 9.4e-36 153.7 83 95.2
Oeu024989.2 Olea europaea HOM05D007087 ORTHO05D008968 9.4e-36 153.7 83 92.8
ECA232G4432 Erigeron canadensis HOM05D007087 ORTHO05D008968 1.2e-35 153.3 83 94.0
HanXRQChr09g0262861 Helianthus annuus HOM05D007087 ORTHO05D008968 1.2e-35 153.3 83 94.0
Manes.12G121500 Manihot esculenta HOM05D007087 ORTHO05D008968 2.1e-35 152.5 84 91.7
EL10Ac6g13306 Beta vulgaris HOM05D007087 ORTHO05D008968 2.7e-35 152.1 83 91.6
Cpa.g.sc129.16 Carica papaya HOM05D007087 ORTHO05D008968 3.6e-35 151.8 84 92.9
HanXRQChr11g0324431 Helianthus annuus HOM05D007087 ORTHO05D008968 3.6e-35 151.8 83 92.8
Actinidia22784 Actinidia chinensis HOM05D007087 ORTHO05D008968 4.7e-35 151.4 82 93.9
THA.LOC104807661 Tarenaya hassleriana HOM05D007087 ORTHO05D008968 4.7e-35 151.4 84 90.5
AL4G12190 Arabidopsis lyrata HOM05D007087 ORTHO05D008968 7.9e-35 150.6 84 90.5
AT2G22640 Arabidopsis thaliana HOM05D007087 ORTHO05D008968 7.9e-35 150.6 84 90.5
BcaB06g27810 Brassica carinata HOM05D007087 ORTHO05D008968 7.9e-35 150.6 84 90.5
Carub.0004s0180 Capsella rubella HOM05D007087 ORTHO05D008968 7.9e-35 150.6 84 90.5
AUR62005889 Chenopodium quinoa HOM05D007087 ORTHO05D008968 7.9e-35 150.6 83 90.4
MELO3C007697.2 Cucumis melo HOM05D007087 ORTHO05D008968 7.9e-35 150.6 83 92.8
Thhalv10000402m.g Eutrema salsugineum HOM05D007087 ORTHO05D008968 7.9e-35 150.6 84 90.5
Lalb_Chr09g0325791 Lupinus albus HOM05D007087 ORTHO05D008968 7.9e-35 150.6 84 94.0
TAR625G1164 Trochodendron aralioides HOM05D007087 ORTHO05D008968 7.9e-35 150.6 83 91.6
Lalb_Chr05g0216201 Lupinus albus HOM05D007087 ORTHO05D008968 1.0e-34 150.2 84 91.7
THA.LOC104824923 Tarenaya hassleriana HOM05D007087 ORTHO05D008968 2.3e-34 149.1 84 88.1
Hund16615 Selenicereus undatus HOM05D007087 ORTHO05D008968 6.7e-34 147.5 79 93.7
Aqoxy5G01405 Aquilegia oxysepala HOM05D007087 ORTHO05D008968 1.1e-33 146.7 85 89.4
Migut.L00449 Erythranthe guttata HOM05D007087 ORTHO05D008968 1.1e-33 146.7 84 86.9
BcaC02g08628 Brassica carinata HOM05D007087 ORTHO05D008968 2.0e-33 146.0 85 89.4
A04p17120 Brassica napus HOM05D007087 ORTHO05D008968 2.0e-33 146.0 85 89.4
C04p51930 Brassica napus HOM05D007087 ORTHO05D008968 2.0e-33 146.0 85 89.4
BolC4t26765H Brassica oleracea HOM05D007087 ORTHO05D008968 2.0e-33 146.0 85 89.4
BraA04t17341Z Brassica rapa HOM05D007087 ORTHO05D008968 2.0e-33 146.0 85 89.4
PSO017G4672 Papaver somniferum HOM05D007087 ORTHO05D008968 2.0e-33 146.0 85 89.4
PSO478G0358 Papaver somniferum HOM05D007087 ORTHO05D008968 2.0e-33 146.0 85 89.4
CDE01G0651 Ceratophyllum demersum HOM05D007087 ORTHO05D008968 2.4e-31 139.0 84 82.1
Zm00001eb259430 Zea mays HOM05D007087 ORTHO05D008968 7.0e-31 137.5 83 83.1
Potri.014G010000 Populus trichocarpa HOM05D007087 ORTHO05D008968 1.2e-30 136.7 90 78.9
CAN.G11.24 Capsicum annuum HOM05D007087 ORTHO05D008968 3.5e-30 135.2 83 81.9
CsaV3_6G044750 Cucumis sativus L. HOM05D007087 ORTHO05D008968 5.9e-30 134.4 72 94.4
Dinv36975 Davidia involucrata HOM05D007087 ORTHO05D008968 1.3e-29 133.3 73 94.5
ATR0800G005 Amborella trichopoda HOM05D007087 ORTHO05D008968 5.0e-29 131.3 78 85.9
Sp4g01675 Schrenkiella parvula HOM05D007087 ORTHO05D008968 6.5e-29 131.0 72 91.7
Cc07_g07910 Coffea canephora HOM05D007087 ORTHO05D008968 9.4e-28 127.1 83 79.5
ClCG01G018190 Citrullus lanatus HOM05D007087 ORTHO05D008968 1.2e-27 126.7 73 90.4
A09p57350 Brassica napus HOM05D007087 ORTHO05D008968 2.7e-27 125.6 83 79.5
BraA09t41128Z Brassica rapa HOM05D007087 ORTHO05D008968 2.7e-27 125.6 83 79.5
COL.COLO4_02760 Corchorus olitorius HOM05D007087 ORTHO05D008968 2.7e-27 125.6 83 81.9
Solyc03g043720.4 Solanum lycopersicum HOM05D007087 ORTHO05D008968 3.6e-27 125.2 83 78.3
Sopen03g007570 Solanum pennellii HOM05D007087 ORTHO05D008968 3.6e-27 125.2 83 78.3
PGSC0003DMG400016688 Solanum tuberosum HOM05D007087 ORTHO05D008968 3.6e-27 125.2 83 78.3
Peaxi162Scf00118g00061 Petunia axillaris HOM05D007087 ORTHO05D008968 6.1e-27 124.4 83 78.3
Sabra14G0004400 Salix brachista HOM05D007087 ORTHO05D008968 8.0e-27 124.0 71 84.5
Nitab4.5_0000465g0110 Nicotiana tabacum HOM05D007087 ORTHO05D008968 1.4e-26 123.2 83 78.3
Sabra14G0001400 Salix brachista HOM05D007087 ORTHO05D008968 3.0e-26 122.1 73 82.2
Sed0015245 Sechium edule HOM05D007087 ORTHO05D008968 8.8e-26 120.6 83 75.9
Os02g0829900 Oryza sativa ssp. japonica HOM05D007087 ORTHO05D008968 2.0e-25 119.4 85 75.3
BcaB08g35111 Brassica carinata HOM05D007087 ORTHO05D008968 5.7e-25 117.9 91 69.2
FAN19G2569 Fragaria x ananassa HOM05D007087 ORTHO05D008968 1.2e-19 100.1 56 92.9
Pp3c8_2740 Physcomitrium patens HOM05D007087 ORTHO05D008968 2.1e-19 99.4 71 69.0
AagrBONN_evm.TU.Sc2ySwM_344.2813 Anthoceros agrestis HOM05D007087 ORTHO05D008968 3.6e-19 98.6 76 61.8
Mapoly0132s0041 Marchantia polymorpha HOM05D007087 ORTHO05D008968 4.7e-19 98.2 72 66.7
Nitab4.5_0008656g0010 Nicotiana tabacum HOM05D007087 ORTHO05D008968 8.8e-18 94.0 83 65.1
Nn5g29785 Nelumbo nucifera HOM05D007087 ORTHO05D008968 9.8e-17 90.5 65 73.8
SMO144G0170 Selaginella moellendorffii HOM05D007087 ORTHO05D008968 1.1e-15 87.0 69 58.0
Aa31LG7G14170 Aethionema arabicum HOM05D007087 ORTHO05D008968 1.8e-15 86.3 44 93.2
unitig_32.g10648 Utricularia gibba HOM05D007087 ORTHO05D008968 2.2e-13 79.3 46 80.4
Actinidia36375 Actinidia chinensis HOM05D007087 ORTHO05D008968 2.9e-13 79.0 78 55.1
SEGI_40703 Sequoiadendron giganteum HOM05D007087 ORTHO05D008968 1.3e-08 63.5 64 42.2
Nitab4.5_0000465g0080 Nicotiana tabacum HOM05D007087 ORTHO05D008968 9.2e-07 57.4 33 81.8


User provided reference genes

Program Settings