Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 8.2e-274 946.4 473 100.0
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 6.5e-271 936.8 473 98.5
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 6.3e-258 893.6 473 94.1
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 5.8e-235 817.4 478 84.3
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 1.7e-234 815.8 476 84.2
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 2.6e-219 765.4 477 78.6
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 2.6e-219 765.4 477 78.6
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 9.9e-219 763.5 479 78.9
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.3e-218 763.1 479 78.3
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 3.2e-217 758.4 505 75.0
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 4.6e-216 754.6 479 78.3
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 1.0e-215 753.4 480 77.9
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.0e-215 753.4 479 76.4
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 4.7e-213 744.6 491 76.2
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 1.5e-211 739.6 476 76.1
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.5e-211 739.6 480 76.2
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 2.0e-211 739.2 480 76.2
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 4.4e-211 738.0 480 76.2
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 2.2e-210 735.7 477 75.9
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 1.4e-209 733.0 484 75.2
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 3.2e-209 731.9 479 74.5
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 3.2e-209 731.9 484 75.0
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 9.3e-209 730.3 481 74.4
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 2.7e-208 728.8 487 73.9
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 4.6e-208 728.0 479 74.9
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 7.8e-208 727.2 478 74.3
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 3.0e-207 725.3 480 74.2
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 3.0e-207 725.3 480 74.8
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 3.9e-207 724.9 483 74.5
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 1.5e-206 723.0 479 73.9
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 2.5e-206 722.2 479 73.9
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 3.3e-206 721.8 480 74.0
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 4.3e-206 721.5 477 74.2
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 5.6e-206 721.1 476 74.6
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 5.6e-206 721.1 480 73.5
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 1.3e-205 719.9 481 72.8
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 1.6e-205 719.5 477 73.6
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 1.6e-205 719.5 480 74.4
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 1.4e-204 716.5 479 73.5
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.4e-204 715.7 483 74.5
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 4.0e-204 714.9 483 74.1
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 4.0e-204 714.9 477 73.8
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 6.9e-204 714.1 477 74.0
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 9.0e-204 713.8 477 72.5
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 2.0e-203 712.6 484 73.8
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 7.6e-203 710.7 483 74.1
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 7.6e-203 710.7 491 72.7
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 9.9e-203 710.3 480 72.9
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 1.3e-202 709.9 477 72.3
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 1.7e-202 709.5 484 73.6
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 2.9e-202 708.8 477 73.4
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 3.8e-202 708.4 480 72.5
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 8.4e-202 707.2 477 72.3
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 1.1e-201 706.8 496 72.0
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 1.1e-201 706.8 477 73.2
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.4e-201 706.4 476 72.5
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 2.4e-201 705.7 481 72.6
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 4.2e-201 704.9 479 72.9
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 4.2e-201 704.9 477 73.0
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 5.4e-201 704.5 475 72.8
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 2.7e-200 702.2 476 72.3
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 4.6e-200 701.4 485 72.6
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 4.6e-200 701.4 476 72.3
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 4.6e-200 701.4 481 73.0
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 3.0e-199 698.7 476 73.1
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 3.3e-198 695.3 476 71.8
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 5.6e-198 694.5 478 70.5
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 5.6e-198 694.5 476 71.2
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 7.4e-198 694.1 482 71.4
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 8.1e-197 690.6 496 69.2
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 5.3e-196 688.0 476 72.7
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 1.2e-195 686.8 479 70.4
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 1.5e-195 686.4 516 68.2
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 2.4e-193 679.1 480 70.6
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 4.2e-193 678.3 476 71.6
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 7.1e-193 677.6 481 69.9
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 3.5e-192 675.2 479 69.1
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 4.6e-192 674.9 479 68.9
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 6.0e-192 674.5 476 69.5
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 1.0e-191 673.7 440 73.4
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.8e-191 672.9 507 67.1
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 5.1e-191 671.4 480 69.0
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 1.3e-189 666.8 479 68.3
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 1.3e-189 666.8 476 68.7
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 6.2e-189 664.5 465 70.8
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 1.1e-188 663.7 486 69.8
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 9.0e-188 660.6 480 68.1
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 1.2e-187 660.2 481 68.2
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 1.2e-187 660.2 481 68.2
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 2.6e-187 659.1 481 68.2
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 2.6e-187 659.1 480 67.5
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 3.4e-187 658.7 481 68.0
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 5.8e-187 657.9 481 67.6
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.3e-186 656.8 415 76.6
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 8.4e-186 654.1 486 67.9
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 8.4e-186 654.1 485 68.7
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 6.0e-184 647.9 569 59.6
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 1.0e-183 647.1 479 66.4
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 1.8e-183 646.4 505 65.0
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 1.5e-182 643.3 430 73.0
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 4.3e-182 641.7 478 66.1
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 1.3e-181 640.2 422 76.3
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 6.3e-181 637.9 464 70.3
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 8.2e-181 637.5 427 73.3
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 1.5e-179 633.3 479 66.2
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 1.4e-177 626.7 497 63.6
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 6.1e-176 621.3 415 72.5
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 1.8e-175 619.8 525 62.1
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 1.2e-171 607.1 558 60.0
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 4.2e-169 598.6 479 64.1
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 7.2e-169 597.8 480 64.4
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.6e-166 589.3 486 58.6
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 6.3e-165 584.7 472 61.7
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 2.2e-162 576.2 489 59.3
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 1.0e-159 567.4 474 57.2
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.2e-152 543.9 411 66.9
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 3.4e-142 509.2 357 73.1
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 5.5e-137 491.9 497 55.3
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 9.2e-132 474.6 477 52.4
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.1e-100 371.3 597 38.7
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 3.3e-97 359.8 253 65.6
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 9.0e-95 351.7 521 42.6
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 3.9e-90 336.3 253 68.0
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 5.6e-89 332.4 179 97.8
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 8.4e-85 318.5 210 79.0
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 5.8e-78 295.8 182 70.9
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 5.5e-76 289.3 210 62.9
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 1.0e-74 285.0 542 35.8
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 1.8e-71 274.2 381 45.4
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 1.5e-70 271.2 250 54.4
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 6.9e-63 245.7 190 58.4
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 8.5e-61 238.8 254 48.8
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 6.1e-59 232.6 489 33.7
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 2.1e-51 207.6 424 36.6
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 3.3e-49 200.3 167 59.9
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 2.7e-43 180.6 380 33.2
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 6.3e-40 169.5 452 28.8
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 2.4e-39 167.5 450 27.8
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 4.0e-34 150.2 211 44.1
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 8.3e-32 142.5 220 39.1
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 3.6e-19 100.5 182 43.4
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 2.8e-16 90.9 66 77.3
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 5.4e-15 86.7 65 69.2
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 2.3e-13 81.3 63 66.7
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.9e-13 80.9 134 36.6
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 5.6e-12 76.6 64 56.2
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 2.8e-11 74.3 69 62.3
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 3.6e-11 73.9 68 63.2
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 5.8e-09 66.6 51 56.9
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.6e-06 58.5 83 44.6
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 3.5e-06 57.4 70 47.1


User provided reference genes

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