Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G3755 Fragaria x ananassa HOM05D001593 ORTHO05D010032 6.1e-77 290.8 155 100.0
FAN16G0784 Fragaria x ananassa HOM05D001593 ORTHO05D010032 7.5e-75 283.9 155 97.4
FvH4_3g20810 Fragaria vesca HOM05D001593 ORTHO05D010032 2.9e-74 282.0 155 96.1
RcHm_v2.0_Chr5g0035101 Rosa chinensis HOM05D001593 ORTHO05D010032 5.8e-67 257.7 155 90.3
Prupe.4G188200 Prunus persica HOM05D001593 ORTHO05D010032 2.0e-51 206.1 153 71.9
MD03G1220500 Malus domestica HOM05D001593 ORTHO05D010032 8.7e-47 190.7 149 71.1
MD03G1220400 Malus domestica HOM05D001593 ORTHO05D010032 6.4e-42 174.5 148 68.9
ClCG10G006650 Citrullus lanatus HOM05D001593 ORTHO05D010032 1.5e-35 153.3 156 53.2
Sed0008194 Sechium edule HOM05D001593 ORTHO05D010032 7.6e-35 151.0 156 51.9
ClCG10G006610 Citrullus lanatus HOM05D001593 ORTHO05D010032 6.4e-34 147.9 159 50.9
CsaV3_3G006040 Cucumis sativus L. HOM05D001593 ORTHO05D010032 1.1e-33 147.1 156 50.6
CsaV3_3G006030 Cucumis sativus L. HOM05D001593 ORTHO05D010032 7.1e-33 144.4 158 50.0
MELO3C016546.2 Cucumis melo HOM05D001593 ORTHO05D010032 3.5e-32 142.1 158 49.4
Eucgr.F03348 Eucalyptus grandis HOM05D001593 ORTHO05D010032 1.2e-27 127.1 123 54.5
QL08p018774 Quercus lobata HOM05D001593 ORTHO05D010032 1.5e-27 126.7 153 45.8
TWI38G2157 Tripterygium wilfordii HOM05D001593 ORTHO05D010032 2.6e-27 125.9 148 45.9
DCAR_009980 Daucus carota HOM05D001593 ORTHO05D010032 4.5e-27 125.2 149 47.7
Prupe.4G188300 Prunus persica HOM05D001593 ORTHO05D010032 7.6e-27 124.4 152 45.4
Eucgr.F03349 Eucalyptus grandis HOM05D001593 ORTHO05D010032 1.7e-26 123.2 151 45.0
HanXRQChr05g0156501 Helianthus annuus HOM05D001593 ORTHO05D010032 1.1e-25 120.6 148 46.6
CiPaw.12G122400 Carya illinoinensis HOM05D001593 ORTHO05D010032 2.5e-25 119.4 153 44.4
FvH4_3g20820 Fragaria vesca HOM05D001593 ORTHO05D010032 2.5e-25 119.4 155 45.8
FAN16G2191 Fragaria x ananassa HOM05D001593 ORTHO05D010032 3.2e-25 119.0 155 45.8
Cc01_g01380 Coffea canephora HOM05D001593 ORTHO05D010032 5.5e-25 118.2 153 42.5
Manes.03G115300 Manihot esculenta HOM05D001593 ORTHO05D010032 1.6e-24 116.7 154 42.9
FAN21G2072 Fragaria x ananassa HOM05D001593 ORTHO05D010032 4.6e-24 115.2 60 96.7
VMungo1309G1650 Vigna mungo HOM05D001593 ORTHO05D010032 3.9e-23 112.1 155 42.6
Lalb_Chr03g0030461 Lupinus albus HOM05D001593 ORTHO05D010032 5.1e-23 111.7 155 39.4
Prupe.4G188400 Prunus persica HOM05D001593 ORTHO05D010032 8.7e-23 110.9 152 44.7
Lsat_1_v5_gn_5_7021 Lactuca sativa HOM05D001593 ORTHO05D010032 1.1e-22 110.5 151 42.4
ECA246G1386 Erigeron canadensis HOM05D001593 ORTHO05D010032 1.5e-22 110.2 146 43.2
Lsat_1_v5_gn_5_7041 Lactuca sativa HOM05D001593 ORTHO05D010032 1.5e-22 110.2 146 41.1
Potri.011G127800 Populus trichocarpa HOM05D001593 ORTHO05D010032 1.9e-22 109.8 129 43.4
Glyma.06G249800 Glycine max HOM05D001593 ORTHO05D010032 3.3e-22 109.0 127 47.2
ECA246G2813 Erigeron canadensis HOM05D001593 ORTHO05D010032 4.3e-22 108.6 146 45.2
Sabra16G0268900 Salix brachista HOM05D001593 ORTHO05D010032 1.3e-21 107.1 152 37.5
TPR.G7332 Trifolium pratense HOM05D001593 ORTHO05D010032 1.3e-21 107.1 155 41.9
SalBow7G3151 Salvia bowleyana HOM05D001593 ORTHO05D010032 1.6e-21 106.7 153 41.8
Sabra16G0267000 Salix brachista HOM05D001593 ORTHO05D010032 2.8e-21 105.9 152 36.8
Potri.001G405600 Populus trichocarpa HOM05D001593 ORTHO05D010032 3.7e-21 105.5 127 41.7
TPR.G23028 Trifolium pratense HOM05D001593 ORTHO05D010032 8.2e-21 104.4 155 40.0
VMungo1127G1295 Vigna mungo HOM05D001593 ORTHO05D010032 8.2e-21 104.4 150 39.3
Actinidia05168 Actinidia chinensis HOM05D001593 ORTHO05D010032 1.1e-20 104.0 186 37.1
Medtr3g055120 Medicago truncatula HOM05D001593 ORTHO05D010032 1.4e-20 103.6 127 44.9
Phvul.011G153600 Phaseolus vulgaris HOM05D001593 ORTHO05D010032 1.4e-20 103.6 153 38.6
Lalb_Chr17g0345681 Lupinus albus HOM05D001593 ORTHO05D010032 3.1e-20 102.4 153 40.5
arahy.Tifrunner.gnm1.ann1.SVGI7B Arachis hypogaea HOM05D001593 ORTHO05D010032 6.9e-20 101.3 158 38.6
Psat4g174160 Pisum sativum HOM05D001593 ORTHO05D010032 6.9e-20 101.3 155 36.1
Phvul.011G154100 Phaseolus vulgaris HOM05D001593 ORTHO05D010032 1.2e-19 100.5 155 38.1
CSS0027856 Camellia sinensis var. sinensis HOM05D001593 ORTHO05D010032 1.5e-19 100.1 210 35.7
Lj3g0024706 Lotus japonicus HOM05D001593 ORTHO05D010032 2.6e-19 99.4 129 43.4
arahy.Tifrunner.gnm1.ann1.I7A6WZ Arachis hypogaea HOM05D001593 ORTHO05D010032 3.4e-19 99.0 158 38.0
Lj3g0022181 Lotus japonicus HOM05D001593 ORTHO05D010032 3.4e-19 99.0 129 42.6
Lalb_Chr19g0134421 Lupinus albus HOM05D001593 ORTHO05D010032 1.3e-18 97.1 150 39.3
Medtr3g055130 Medicago truncatula HOM05D001593 ORTHO05D010032 2.2e-18 96.3 155 38.7
Aqoxy4G01373 Aquilegia oxysepala HOM05D001593 ORTHO05D010032 1.1e-17 94.0 136 36.0
Lalb_Chr03g0030521 Lupinus albus HOM05D001593 ORTHO05D010032 1.4e-17 93.6 150 38.7
Sed0013638 Sechium edule HOM05D001593 ORTHO05D010032 2.7e-16 89.4 155 36.8
CDE05G2529 Ceratophyllum demersum HOM05D001593 ORTHO05D010032 6.1e-16 88.2 115 44.3
PGR031G2663 Punica granatum HOM05D001593 ORTHO05D010032 3.9e-15 85.5 129 36.4
SEGI_29216 Sequoiadendron giganteum HOM05D001593 ORTHO05D000001 6.7e-15 84.7 116 39.7
HPP92_000927 Vanilla planifolia HOM05D001593 ORTHO05D010032 8.2e-13 77.8 129 34.1
PSO832G0778 Papaver somniferum HOM05D001593 ORTHO05D010032 1.8e-12 76.6 129 38.0
MELO3C032197.2 Cucumis melo HOM05D001593 ORTHO05D010032 2.0e-11 73.2 60 55.0
MD11G1238400 Malus domestica HOM05D001593 ORTHO05D010032 2.2e-10 69.7 100 44.0
SEGI_19703 Sequoiadendron giganteum HOM05D001593 ORTHO05D010032 2.9e-10 69.3 124 35.5
HPP92_001812 Vanilla planifolia HOM05D001593 ORTHO05D010032 2.9e-10 69.3 116 34.5
HPP92_001813 Vanilla planifolia HOM05D001593 ORTHO05D010032 2.9e-10 69.3 116 34.5
HPP92_001814 Vanilla planifolia HOM05D001593 ORTHO05D010032 2.9e-10 69.3 116 34.5
HPP92_001815 Vanilla planifolia HOM05D001593 ORTHO05D010032 2.9e-10 69.3 116 34.5
HPP92_001816 Vanilla planifolia HOM05D001593 ORTHO05D010032 2.9e-10 69.3 116 34.5
HPP92_001817 Vanilla planifolia HOM05D001593 ORTHO05D010032 2.9e-10 69.3 116 34.5
Atru.chr4.2935 Acer truncatum HOM05D000322 ORTHO05D000186 5.0e-10 68.6 144 27.8
CiPaw.01G144000 Carya illinoinensis HOM05D000322 ORTHO05D000186 8.5e-10 67.8 122 30.3
Mapoly0063s0018 Marchantia polymorpha HOM05D001593 ORTHO05D002007 2.5e-09 66.2 145 31.0
ATR0693G026 Amborella trichopoda HOM05D000322 ORTHO05D000186 3.2e-09 65.9 139 29.5
TWI09G0198 Tripterygium wilfordii HOM05D000322 ORTHO05D000186 3.2e-09 65.9 116 26.7
CDE01G0729 Ceratophyllum demersum HOM05D000322 ORTHO05D000186 7.2e-09 64.7 107 37.4
HPP92_011864 Vanilla planifolia HOM05D000322 ORTHO05D000186 9.4e-09 64.3 124 32.3
CAN.G869.19 Capsicum annuum HOM05D001593 ORTHO05D002007 1.6e-08 63.5 144 29.2
Mapoly0063s0020 Marchantia polymorpha HOM05D001593 ORTHO05D010032 1.6e-08 63.5 145 29.7
Mapoly0063s0024 Marchantia polymorpha HOM05D008409 ORTHO05D010032 2.1e-08 63.2 140 31.4
SMO337G0049 Selaginella moellendorffii HOM05D000322 ORTHO05D000186 2.1e-08 63.2 123 34.1
ATR0693G208 Amborella trichopoda HOM05D000322 ORTHO05D000186 2.7e-08 62.8 144 29.2
Dinv17248 Davidia involucrata HOM05D001593 ORTHO05D002007 3.6e-08 62.4 153 26.1
PGSC0003DMG400003399 Solanum tuberosum HOM05D001593 ORTHO05D002007 4.6e-08 62.0 150 28.0
CDE12G0035 Ceratophyllum demersum HOM05D000322 ORTHO05D000186 6.1e-08 61.6 118 33.1
PGSC0003DMG400041243 Solanum tuberosum HOM05D001593 ORTHO05D002007 6.1e-08 61.6 150 28.0
ClCG09G016940 Citrullus lanatus HOM05D001593 ORTHO05D002007 7.9e-08 61.2 155 27.1
TWI53G1556 Tripterygium wilfordii HOM05D000322 ORTHO05D000186 7.9e-08 61.2 137 25.5
TAR629G0649 Trochodendron aralioides HOM05D001593 ORTHO05D002007 7.9e-08 61.2 154 24.7
CDE12G0840 Ceratophyllum demersum HOM05D000322 ORTHO05D000186 1.0e-07 60.8 107 36.4
QL06p010956 Quercus lobata HOM05D000322 ORTHO05D000186 1.0e-07 60.8 135 26.7
Peaxi162Scf00372g00127 Petunia axillaris HOM05D001593 ORTHO05D002007 1.4e-07 60.5 129 34.9
MELO3C003860.2 Cucumis melo HOM05D001593 ORTHO05D002007 1.8e-07 60.1 156 26.3
CDE01G0674 Ceratophyllum demersum HOM05D000322 ORTHO05D000186 2.3e-07 59.7 118 33.1
CsaV3_2G036450 Cucumis sativus L. HOM05D001593 ORTHO05D002007 2.3e-07 59.7 157 24.8
Ciclev10006674m.g Citrus clementina HOM05D000322 ORTHO05D000186 3.9e-07 58.9 142 23.2
Peaxi162Scf00372g00122 Petunia axillaris HOM05D001593 ORTHO05D002007 3.9e-07 58.9 136 27.9
Sopen06g002710 Solanum pennellii HOM05D001593 ORTHO05D002007 3.9e-07 58.9 150 27.3
vmacro08088 Vaccinium macrocarpon HOM05D000322 ORTHO05D000186 3.9e-07 58.9 118 28.0
Haze_00394 Corylus avellana HOM05D001593 ORTHO05D002007 5.1e-07 58.5 155 25.2
MBI14_g31144_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 5.1e-07 58.5 109 33.9
SalBow2G0136 Salvia bowleyana HOM05D001593 ORTHO05D002007 5.1e-07 58.5 152 27.6
CDE01G0755 Ceratophyllum demersum HOM05D000322 ORTHO05D000186 6.7e-07 58.2 118 32.2
MELO3C003859.2 Cucumis melo HOM05D001593 ORTHO05D002007 6.7e-07 58.2 155 25.8
DCAR_023317 Daucus carota HOM05D000322 ORTHO05D000186 6.7e-07 58.2 87 31.0
Zm00001eb072230 Zea mays HOM05D001593 ORTHO05D002007 6.7e-07 58.2 139 28.1
Actinidia40313 Actinidia chinensis HOM05D000322 ORTHO05D000186 8.8e-07 57.8 130 30.8
Ca_18955_v3 Cicer arietinum L. HOM05D001593 ORTHO05D002007 8.8e-07 57.8 113 28.3
ClCG09G016960 Citrullus lanatus HOM05D001593 ORTHO05D002007 8.8e-07 57.8 155 24.5
CsaV3_2G036440 Cucumis sativus L. HOM05D001593 ORTHO05D002007 8.8e-07 57.8 130 26.9
Dinv29700 Davidia involucrata HOM05D000322 ORTHO05D000186 8.8e-07 57.8 76 39.5
Migut.G00115 Erythranthe guttata HOM05D000322 ORTHO05D000186 8.8e-07 57.8 115 29.6
Cfa016054 Carpinus fangiana HOM05D001593 ORTHO05D002007 1.1e-06 57.4 155 24.5
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.1e-06 57.4 157 29.9
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 1.1e-06 57.4 129 30.2
Rhsim04G0231400 Rhododendron simsii HOM05D000322 ORTHO05D000186 1.1e-06 57.4 118 29.7
Aqoxy3G02248 Aquilegia oxysepala HOM05D001593 ORTHO05D002007 1.5e-06 57.0 154 24.7
Cfa015459 Carpinus fangiana HOM05D000322 ORTHO05D000186 1.5e-06 57.0 141 30.5
MELO3C021884.2 Cucumis melo HOM05D001593 ORTHO05D002007 1.5e-06 57.0 157 24.2
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.5e-06 57.0 158 29.1
Sed0003698 Sechium edule HOM05D001593 ORTHO05D002007 1.5e-06 57.0 159 25.8
Mapoly0151s0036 Marchantia polymorpha HOM05D000322 ORTHO05D000186 2.0e-06 56.6 120 30.8
Solyc06g007860.1 Solanum lycopersicum HOM05D001593 ORTHO05D002007 2.0e-06 56.6 150 26.7
Eucgr.A00142 Eucalyptus grandis HOM05D000322 ORTHO05D000186 2.5e-06 56.2 126 26.2
Nn8g41278 Nelumbo nucifera HOM05D000322 ORTHO05D000186 2.5e-06 56.2 110 29.1
Rhsim04G0231300 Rhododendron simsii HOM05D000322 ORTHO05D000186 2.5e-06 56.2 118 27.1
vmacro08083 Vaccinium macrocarpon HOM05D000322 ORTHO05D000186 2.5e-06 56.2 118 27.1
Actinidia40339 Actinidia chinensis HOM05D000322 ORTHO05D000186 3.3e-06 55.8 123 25.2
Lj3g0025090 Lotus japonicus HOM05D001593 ORTHO05D002007 3.3e-06 55.8 113 30.1
vmacro08084 Vaccinium macrocarpon HOM05D000322 ORTHO05D000186 3.3e-06 55.8 118 27.1
Migut.F00939 Erythranthe guttata HOM05D001593 ORTHO05D002007 4.3e-06 55.5 144 25.0
SalBow8G5143 Salvia bowleyana HOM05D000322 ORTHO05D000186 4.3e-06 55.5 75 36.0
Aqoxy1G02445 Aquilegia oxysepala HOM05D001593 ORTHO05D002007 5.7e-06 55.1 157 24.2
MSTRG.8555 Avicennia marina HOM05D001593 ORTHO05D002007 7.4e-06 54.7 157 25.5
COL.COLO4_34686 Corchorus olitorius HOM05D000322 ORTHO05D000186 7.4e-06 54.7 144 25.0
Migut.F00938 Erythranthe guttata HOM05D001593 ORTHO05D002007 7.4e-06 54.7 149 27.5
Glyma.12G017100 Glycine max HOM05D001593 ORTHO05D002007 7.4e-06 54.7 113 28.3
MBI18_g04567_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 7.4e-06 54.7 108 29.6
Potri.004G032900 Populus trichocarpa HOM05D000322 ORTHO05D000186 7.4e-06 54.7 120 31.7
Potri.004G033000 Populus trichocarpa HOM05D000322 ORTHO05D000186 7.4e-06 54.7 120 31.7
SMO141G0029 Selaginella moellendorffii HOM05D000322 ORTHO05D000186 7.4e-06 54.7 107 32.7
HPP92_006905 Vanilla planifolia HOM05D000322 ORTHO05D000186 7.4e-06 54.7 117 31.6
Dinv29696 Davidia involucrata HOM05D000322 ORTHO05D000186 9.7e-06 54.3 119 27.7
Hma1.2p1_0078F.1_g040230 Hydrangea macrophylla HOM05D000322 ORTHO05D000186 9.7e-06 54.3 83 34.9
MBI14_g31146_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 9.7e-06 54.3 89 33.7
Sabra15G0087800 Salix brachista HOM05D000322 ORTHO05D000186 9.7e-06 54.3 118 33.1
PGSC0003DMG400027952 Solanum tuberosum HOM05D001593 ORTHO05D002007 9.7e-06 54.3 152 27.6
SGA_v2.0_scaffold724G53516 Striga asiatica HOM05D000322 ORTHO05D000186 9.7e-06 54.3 110 30.9


User provided reference genes

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