Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.7e-105 386.0 192 100.0
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.6e-105 383.6 192 99.5
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.0e-97 358.6 179 99.4
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.5e-96 355.5 179 98.3
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.0e-86 321.6 205 82.9
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.5e-85 319.7 205 82.0
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.6e-82 309.7 204 79.9
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.0e-81 307.0 205 80.0
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 1.3e-81 306.6 205 79.5
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.1e-81 304.7 205 79.5
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.1e-78 295.4 205 78.0
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 2.9e-76 288.9 209 75.1
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 5.3e-70 268.1 205 70.7
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 5.3e-70 268.1 205 69.8
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 9.0e-70 267.3 205 71.7
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.9e-64 249.6 130 95.4
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 3.3e-64 248.8 121 100.0
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.7e-64 248.1 130 94.6
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 6.3e-63 244.6 130 93.8
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 2.7e-58 229.2 204 58.8
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 5.7e-56 221.5 204 57.4
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 2.2e-55 219.5 204 56.4
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 3.7e-55 218.8 204 57.4
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 1.1e-54 217.2 204 57.8
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 1.4e-54 216.9 204 56.4
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 1.8e-54 216.5 205 58.0
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 2.4e-54 216.1 204 57.8
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 3.1e-54 215.7 203 55.7
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 3.1e-54 215.7 205 57.1
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 1.5e-53 213.4 204 55.9
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 2.0e-53 213.0 205 54.1
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 2.0e-53 213.0 203 55.2
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 2.6e-53 212.6 204 56.9
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 2.6e-53 212.6 205 54.1
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 2.6e-53 212.6 206 56.8
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 4.5e-53 211.8 204 55.4
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 4.5e-53 211.8 203 58.1
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 4.5e-53 211.8 203 56.2
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 7.7e-53 211.1 205 56.6
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 1.3e-52 210.3 205 54.6
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.7e-52 209.9 205 57.1
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 2.2e-52 209.5 203 54.2
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 2.9e-52 209.1 205 55.1
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 3.8e-52 208.8 206 55.8
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 6.5e-52 208.0 203 54.2
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 8.5e-52 207.6 202 57.4
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 1.4e-51 206.8 203 55.7
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 1.9e-51 206.5 204 56.4
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 2.7e-50 202.6 204 52.9
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 2.7e-50 202.6 204 52.9
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.8e-49 199.9 101 96.0
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 1.8e-49 199.9 204 52.5
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 2.3e-49 199.5 205 54.6
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 3.3e-48 195.7 204 52.0
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 4.4e-48 195.3 205 54.1
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 4.4e-48 195.3 204 53.4
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 5.7e-48 194.9 208 51.9
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 5.7e-48 194.9 204 52.9
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 1.3e-47 193.7 205 54.1
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 8.2e-47 191.0 206 53.4
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 1.1e-46 190.7 204 52.0
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 3.1e-46 189.1 204 53.4
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 3.1e-46 189.1 204 53.4
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 1.2e-45 187.2 204 50.5
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 1.5e-45 186.8 210 50.0
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 2.0e-45 186.4 204 52.5
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 3.4e-45 185.7 205 50.2
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 4.5e-45 185.3 214 50.0
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 5.9e-45 184.9 204 51.5
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 7.7e-45 184.5 204 51.0
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 7.7e-45 184.5 214 50.0
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 7.7e-45 184.5 208 50.5
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 7.7e-45 184.5 205 51.2
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 7.7e-45 184.5 205 51.2
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 1.0e-44 184.1 204 51.0
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 1.0e-44 184.1 204 52.0
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 1.0e-44 184.1 204 51.0
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 1.3e-44 183.7 204 51.5
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 2.2e-44 183.0 205 51.7
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 2.9e-44 182.6 204 52.0
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 1.1e-43 180.6 205 51.7
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 1.1e-43 180.6 204 49.0
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.4e-43 180.3 208 49.5
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 1.9e-43 179.9 204 51.5
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 1.9e-43 179.9 204 51.5
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 1.9e-43 179.9 204 49.0
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 1.9e-43 179.9 204 50.5
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 2.5e-43 179.5 204 51.0
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 3.2e-43 179.1 207 48.8
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 5.5e-43 178.3 205 49.8
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 5.5e-43 178.3 193 50.8
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 5.5e-43 178.3 204 50.5
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 7.2e-43 177.9 204 51.5
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 7.2e-43 177.9 204 51.5
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 7.2e-43 177.9 204 47.5
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 9.4e-43 177.6 205 48.8
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 9.4e-43 177.6 204 48.0
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 1.2e-42 177.2 204 48.0
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 1.2e-42 177.2 210 49.5
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 2.1e-42 176.4 204 48.0
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 2.7e-42 176.0 204 48.5
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 2.7e-42 176.0 195 50.3
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 3.6e-42 175.6 207 47.8
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 2.3e-41 172.9 210 47.6
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 3.0e-41 172.6 206 50.0
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 3.9e-41 172.2 204 49.0
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 8.8e-41 171.0 205 47.8
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 9.7e-40 167.5 210 49.0
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 9.7e-40 167.5 208 48.1
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 1.1e-38 164.1 209 46.4
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 9.1e-38 161.0 201 46.8
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 1.6e-37 160.2 207 46.4
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 2.2e-36 156.4 205 44.9
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 2.2e-36 156.4 205 45.4
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 3.8e-36 155.6 204 45.6
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 6.7e-33 144.8 210 41.0
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 4.4e-32 142.1 205 39.0
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 8.2e-31 137.9 208 44.2
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 4.1e-30 135.6 205 38.5
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 3.8e-28 129.0 211 38.9
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 3.8e-28 129.0 198 42.9
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 2.7e-26 122.9 205 36.1
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 2.7e-21 106.3 189 36.5
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 1.9e-19 100.1 71 64.8
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 2.8e-15 86.3 220 32.3
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 3.3e-11 72.8 70 47.1


User provided reference genes

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