Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 3421.7 1782 100.0
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 3337.7 1815 96.3
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 3303.5 1806 95.6
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 3251.5 1830 93.6
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 3144.8 1815 90.8
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 3023.8 1817 88.1
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 2772.3 1819 79.7
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 2743.4 1817 78.5
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 2540.4 1819 72.8
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 2520.0 1806 72.3
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 2501.1 1805 71.4
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 2491.8 1856 70.2
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 2420.2 1816 69.4
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 2419.8 1813 68.4
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 2407.1 1816 69.4
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2399.4 1837 67.8
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 2398.6 1811 68.6
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2393.6 1837 67.6
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 2390.5 1812 68.6
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 2386.3 1814 68.4
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 2369.7 1812 68.5
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 2369.3 1819 67.7
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 2364.0 1816 67.7
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2358.9 1803 67.6
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 2357.8 1816 67.3
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2355.1 1814 67.7
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2347.0 1803 67.5
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 2342.4 1808 68.0
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 2333.1 1816 67.5
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 2333.1 1818 66.3
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2330.8 1814 67.4
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 2328.5 1816 67.1
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 2305.4 1775 66.8
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 2302.3 1807 66.2
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 2289.2 1806 65.5
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 2288.8 1816 65.9
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 2288.1 1805 64.5
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 2286.5 1812 65.5
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 2285.0 1815 65.5
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 2279.2 1826 65.6
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 2278.1 1808 65.0
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 2275.4 1816 64.1
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2272.3 1805 66.0
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 2265.0 1839 65.5
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 2263.4 1811 64.1
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 2256.1 1805 63.9
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 2253.4 1802 64.6
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 2249.9 1804 64.7
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 2246.9 1806 64.2
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2238.4 1814 64.4
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 2223.7 1809 63.4
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 2220.7 1798 65.4
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 2214.5 1817 63.7
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2208.3 1804 63.4
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 2205.6 2362 52.8
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 2192.2 1804 62.1
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 2185.6 1805 62.9
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 2185.2 1817 62.6
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 2181.4 1803 62.8
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 2176.0 1803 62.6
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 2175.6 1803 62.5
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2171.7 1813 63.0
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2168.3 1806 63.3
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 2166.0 1803 62.2
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2154.4 1814 62.0
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 2152.9 1804 62.3
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 2152.9 1975 58.1
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 2150.2 1810 61.7
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2150.2 1808 62.1
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 2115.1 1810 61.3
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 2099.3 1818 60.6
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 2095.5 1827 60.3
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 2095.1 1831 60.2
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 2072.0 1898 59.0
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 2036.5 1798 59.0
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 1962.2 1804 56.7
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 1930.2 1501 65.4
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 1929.8 1478 68.1
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 1860.1 1394 68.9
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 1781.5 1353 67.5
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 1755.3 1324 68.3
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1749.9 1394 65.4
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 1681.8 1301 66.8
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 0.0e+00 1678.7 1348 66.5
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 0.0e+00 1559.7 1867 46.0
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 0.0e+00 1557.3 1232 67.0
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 0.0e+00 1518.1 1341 61.6
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 0.0e+00 1518.1 1872 46.2
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 0.0e+00 1489.2 1833 46.8
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 0.0e+00 1453.0 1884 44.3
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 0.0e+00 1411.4 1151 63.8
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 0.0e+00 1375.5 1642 46.9
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1350.9 1091 64.3
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1292.7 1115 59.6
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 0.0e+00 1238.0 1346 53.3
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 0.0e+00 1075.5 1053 55.3
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 2.7e-309 1066.2 905 59.8
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 8.2e-266 921.8 1562 35.5
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 5.5e-254 882.5 886 53.0
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 2.5e-238 830.5 1736 33.2
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 1.0e-228 798.5 781 54.9
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 7.7e-224 782.3 1737 32.6
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 1.1e-214 751.9 636 61.8
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 4.7e-205 719.9 599 64.8
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 2.4e-201 707.6 512 71.1
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 5.3e-180 636.7 667 52.0
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 3.3e-174 617.5 454 70.9
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 3.6e-173 614.0 442 70.8
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 9.3e-169 599.4 367 87.5
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 5.6e-158 563.5 2022 26.1
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 1.8e-156 558.5 451 67.0
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.3e-154 552.4 522 55.7
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 1.1e-153 549.3 456 67.3
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 4.7e-136 490.7 315 77.1
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 4.2e-121 441.0 347 66.0
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 8.0e-120 436.8 829 37.3
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 5.9e-99 367.5 1628 23.8
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 3.5e-91 341.7 290 61.0
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 7.3e-89 334.0 278 61.9
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 7.1e-84 317.4 284 58.5
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 7.6e-78 297.4 161 88.2
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 5.2e-71 274.6 273 50.5
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 8.4e-61 240.7 342 38.3
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 4.2e-60 238.4 194 65.5
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 1.6e-59 236.5 339 45.1
SEGI_21027 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 6.2e-56 224.6 206 56.3
Gohir.A09G108566 Gossypium hirsutum HOM05D004500 ORTHO05D005775 6.4e-53 214.5 163 66.9
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 2.9e-45 189.1 191 52.4
Thhalv10012226m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 2.9e-45 189.1 327 41.0
PSO339G2400 Papaver somniferum HOM05D004500 ORTHO05D005775 4.2e-44 185.3 287 42.5
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 3.5e-43 182.2 147 66.7
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 7.9e-43 181.0 130 70.8
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 1.8e-42 179.9 147 59.2
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 9.0e-39 167.5 221 42.1
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 1.2e-38 167.2 183 54.6
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 7.6e-38 164.5 183 54.1
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 7.6e-38 164.5 139 65.5
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 5.0e-37 161.8 138 63.8
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 6.1e-35 154.8 174 46.0
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.1e-28 134.0 153 44.4
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 6.7e-26 124.8 90 67.8
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 4.3e-25 122.1 143 44.8
Lj1A1068G47 Lonicera japonica HOM05D004500 ORTHO05D005775 1.3e-24 120.6 78 78.2
Peaxi162Scf00029g02525 Petunia axillaris HOM05D004500 ORTHO05D028702 8.2e-24 117.9 171 39.2
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 1.1e-23 117.5 75 74.7
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 7.7e-22 111.3 216 31.9
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 1.0e-21 110.9 162 41.4
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 4.7e-19 102.1 88 58.0
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 4.7e-19 102.1 157 36.9
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 9.7e-17 94.4 137 41.6
HPP92_022828 Vanilla planifolia HOM05D004500 ORTHO05D005775 1.3e-16 94.0 76 65.8
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.7e-16 93.6 84 48.8
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 1.0e-13 84.3 105 51.4
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 1.3e-13 84.0 118 45.8
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 2.5e-12 79.7 115 37.4
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 5.5e-12 78.6 55 65.5
Nitab4.5_0004629g0080 Nicotiana tabacum HOM05D004500 ORTHO05D028702 1.2e-11 77.4 91 42.9
MD12G1083300 Malus domestica HOM05D004500 ORTHO05D005775 3.0e-10 72.8 75 61.3
EL10Ac5g12062 Beta vulgaris HOM05D004500 ORTHO05D005775 2.4e-07 63.2 60 48.3
SEGI_07125 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.4e-07 63.2 117 34.2
FAN11G4012 Fragaria x ananassa HOM05D004500 ORTHO05D203631 4.5e-06 58.9 38 76.3


User provided reference genes

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