Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G3588 Fragaria x ananassa HOM05D007155 ORTHO05D003034 4.9e-62 243.0 519 100.0
FAN11G2573 Fragaria x ananassa HOM05D007155 ORTHO05D003034 1.7e-54 218.0 514 97.3
FvH4_3g13070 Fragaria vesca HOM05D007155 ORTHO05D003034 2.2e-54 217.6 514 97.5
FAN16G0835 Fragaria x ananassa HOM05D007155 ORTHO05D003034 8.7e-51 205.7 513 96.7
FAN21G1032 Fragaria x ananassa HOM05D007155 ORTHO05D003034 9.6e-50 202.2 507 94.5
RcHm_v2.0_Chr5g0021261 Rosa chinensis HOM05D007155 ORTHO05D003034 4.8e-49 199.9 514 96.5
MD10G1226600 Malus domestica HOM05D007155 ORTHO05D003034 1.6e-41 174.9 514 92.2
Prupe.4G118800 Prunus persica HOM05D007155 ORTHO05D003034 1.6e-33 148.3 118 63.6
QL10p022098 Quercus lobata HOM05D007155 ORTHO05D003034 1.1e-32 145.6 87 80.5
Thecc.02G002900 Theobroma cacao HOM05D007155 ORTHO05D003034 5.3e-32 143.3 86 77.9
Dinv26303 Davidia involucrata HOM05D007155 ORTHO05D003034 1.5e-31 141.7 87 75.9
Gohir.A05G245700 Gossypium hirsutum HOM05D007155 ORTHO05D003034 1.5e-31 141.7 124 78.2
Lj2P342T43 Lonicera japonica HOM05D007155 ORTHO05D003034 2.6e-31 141.0 87 74.7
Potri.003G154800 Populus trichocarpa HOM05D007155 ORTHO05D003034 3.4e-31 140.6 87 79.3
Cfa001139 Carpinus fangiana HOM05D007155 ORTHO05D003034 5.9e-31 139.8 86 75.6
CiPaw.09G138700 Carya illinoinensis HOM05D007155 ORTHO05D003034 5.9e-31 139.8 87 74.7
Haze_05252 Corylus avellana HOM05D007155 ORTHO05D003034 5.9e-31 139.8 86 75.6
GSVIVG01012156001 Vitis vinifera HOM05D007155 ORTHO05D003034 5.9e-31 139.8 87 72.4
Duzib132G0118 Durio zibethinus HOM05D007155 ORTHO05D003034 1.3e-30 138.7 86 75.6
Gohir.D05G247200 Gossypium hirsutum HOM05D007155 ORTHO05D003034 2.2e-30 137.9 87 73.6
DCAR_001266 Daucus carota HOM05D007155 ORTHO05D003034 8.5e-30 136.0 87 74.7
Gorai.009G258000 Gossypium raimondii HOM05D007155 ORTHO05D003034 8.5e-30 136.0 87 73.6
Eucgr.D00014 Eucalyptus grandis HOM05D007155 ORTHO05D003034 3.2e-29 134.0 84 75.0
PSO210G6432 Papaver somniferum HOM05D007155 ORTHO05D003034 4.2e-29 133.7 87 72.4
Atru.chr10.291 Acer truncatum HOM05D007155 ORTHO05D003034 5.5e-29 133.3 86 75.6
Phvul.009G243700 Phaseolus vulgaris HOM05D007155 ORTHO05D003034 5.5e-29 133.3 124 74.2
Sabra03G0112000 Salix brachista HOM05D007155 ORTHO05D003034 5.5e-29 133.3 87 74.7
Manes.09G079638 Manihot esculenta HOM05D007155 ORTHO05D003034 9.4e-29 132.5 87 71.3
PSO832G3824 Papaver somniferum HOM05D007155 ORTHO05D003034 9.4e-29 132.5 87 71.3
Lalb_Chr15g0083741 Lupinus albus HOM05D007155 ORTHO05D003034 1.6e-28 131.7 124 73.4
Potri.001G075900 Populus trichocarpa HOM05D007155 ORTHO05D003034 1.6e-28 131.7 83 77.1
Ciclev10014519m.g Citrus clementina HOM05D007155 ORTHO05D003034 2.7e-28 131.0 87 69.0
MSTRG.22516 Avicennia marina HOM05D007155 ORTHO05D003034 3.6e-28 130.6 87 70.1
Ca_01983_v3 Cicer arietinum L. HOM05D007155 ORTHO05D003034 3.6e-28 130.6 124 60.5
TPR.G29692 Trifolium pratense HOM05D007155 ORTHO05D003034 3.6e-28 130.6 122 68.0
CSS0001449 Camellia sinensis var. sinensis HOM05D007155 ORTHO05D003034 7.9e-28 129.4 87 71.3
CSS0034942 Camellia sinensis var. sinensis HOM05D007155 ORTHO05D003034 7.9e-28 129.4 87 71.3
PGR142G0445 Punica granatum HOM05D007155 ORTHO05D003034 1.0e-27 129.0 87 67.8
Nn1g07043 Nelumbo nucifera HOM05D007155 ORTHO05D003034 1.4e-27 128.6 86 72.1
Medtr2g035450 Medicago truncatula HOM05D007155 ORTHO05D003034 1.8e-27 128.3 87 67.8
Psat1g150440 Pisum sativum HOM05D007155 ORTHO05D003034 2.3e-27 127.9 87 67.8
Lj6g0001159 Lotus japonicus HOM05D007155 ORTHO05D003034 3.9e-27 127.1 122 52.5
VMungo1309G1642 Vigna mungo HOM05D007155 ORTHO05D003034 3.9e-27 127.1 122 51.6
Glyma.09G050500 Glycine max HOM05D007155 ORTHO05D003034 6.7e-27 126.3 85 67.1
Manes.13G075956 Manihot esculenta HOM05D007155 ORTHO05D003034 8.8e-27 125.9 87 67.8
TAR624G1337 Trochodendron aralioides HOM05D007155 ORTHO05D003034 8.8e-27 125.9 79 77.2
Lalb_Chr02g0154101 Lupinus albus HOM05D007155 ORTHO05D003034 1.1e-26 125.6 124 71.8
Cc09_g05030 Coffea canephora HOM05D007155 ORTHO05D003034 1.5e-26 125.2 87 63.2
Oeu046920.2 Olea europaea HOM05D007155 ORTHO05D003034 2.0e-26 124.8 86 67.4
Actinidia34693 Actinidia chinensis HOM05D007155 ORTHO05D003034 7.4e-26 122.9 87 69.0
CANSAT21G2211 Cannabis sativa HOM05D007155 ORTHO05D003034 1.7e-25 121.7 80 68.8
CANSAT35G0897 Cannabis sativa HOM05D007155 ORTHO05D003034 1.7e-25 121.7 80 68.8
vmacro11017 Vaccinium macrocarpon HOM05D007155 ORTHO05D003034 2.2e-25 121.3 84 67.9
Rhsim10G0011200 Rhododendron simsii HOM05D007155 ORTHO05D003034 2.8e-25 120.9 87 67.8
Sp7g18540 Schrenkiella parvula HOM05D007155 ORTHO05D003034 3.7e-25 120.6 87 66.7
A01p11870 Brassica napus HOM05D007155 ORTHO05D003034 8.2e-25 119.4 87 65.5
BraA01t01129Z Brassica rapa HOM05D007155 ORTHO05D003034 1.1e-24 119.0 87 64.4
SalBow7G4478 Salvia bowleyana HOM05D007155 ORTHO05D003034 1.1e-24 119.0 87 64.4
Carub.0007s2104 Capsella rubella HOM05D007155 ORTHO05D003034 1.4e-24 118.6 122 56.6
CsaV3_2G014420 Cucumis sativus L. HOM05D007155 ORTHO05D003034 1.8e-24 118.2 87 63.2
CARHR226930 Cardamine hirsuta HOM05D007155 ORTHO05D003034 3.1e-24 117.5 87 63.2
Thhalv10010168m.g Eutrema salsugineum HOM05D007155 ORTHO05D003034 3.1e-24 117.5 87 64.4
C01p14070 Brassica napus HOM05D007155 ORTHO05D003034 5.3e-24 116.7 87 62.1
BolC1t01374H Brassica oleracea HOM05D007155 ORTHO05D003034 5.3e-24 116.7 87 62.1
Sc17g0004280 Simmondsia chinensis HOM05D007155 ORTHO05D003034 6.9e-24 116.3 87 65.5
AL7G33760 Arabidopsis lyrata HOM05D007155 ORTHO05D003034 1.5e-23 115.2 87 63.2
THA.LOC104811820 Tarenaya hassleriana HOM05D007155 ORTHO05D003034 1.5e-23 115.2 124 61.3
ClCG01G025760 Citrullus lanatus HOM05D007155 ORTHO05D003034 2.0e-23 114.8 87 62.1
AT4G20090 Arabidopsis thaliana HOM05D007155 ORTHO05D003034 3.4e-23 114.0 87 64.4
Aqoxy1G03675 Aquilegia oxysepala HOM05D007155 ORTHO05D003034 5.9e-23 113.2 85 62.4
Nitab4.5_0010610g0010 Nicotiana tabacum HOM05D007155 ORTHO05D003034 5.9e-23 113.2 86 58.1
Ah.15g092760 Amaranthus hybridus HOM05D007155 ORTHO05D003034 7.7e-23 112.8 84 63.1
Lsat_1_v5_gn_5_153261 Lactuca sativa HOM05D007155 ORTHO05D003034 1.0e-22 112.5 86 59.3
HanXRQChr01g0005921 Helianthus annuus HOM05D007155 ORTHO05D003034 1.7e-22 111.7 87 62.1
BcaNung06194 Brassica carinata HOM05D007155 ORTHO05D003034 3.8e-22 110.5 88 63.6
ECA233G0666 Erigeron canadensis HOM05D007155 ORTHO05D003034 3.8e-22 110.5 87 58.6
Sed0017393 Sechium edule HOM05D007155 ORTHO05D003034 3.8e-22 110.5 88 58.0
Migut.L00267 Erythranthe guttata HOM05D007155 ORTHO05D003034 5.0e-22 110.2 76 69.7
Solyc02g081860.3 Solanum lycopersicum HOM05D007155 ORTHO05D003034 8.5e-22 109.4 82 57.3
CAN.G809.50 Capsicum annuum HOM05D007155 ORTHO05D003034 1.4e-21 108.6 83 56.6
Hund12398 Selenicereus undatus HOM05D007155 ORTHO05D003034 2.5e-21 107.8 80 63.8
Sopen02g026480 Solanum pennellii HOM05D007155 ORTHO05D003034 2.5e-21 107.8 82 57.3
Aa31LG6G2510 Aethionema arabicum HOM05D007155 ORTHO05D003034 3.2e-21 107.5 81 66.7
PGSC0003DMG400007329 Solanum tuberosum HOM05D007155 ORTHO05D003034 3.2e-21 107.5 82 56.1
Nitab4.5_0000844g0300 Nicotiana tabacum HOM05D007155 ORTHO05D003034 5.5e-21 106.7 83 57.8
Peaxi162Scf00036g00084 Petunia axillaris HOM05D007155 ORTHO05D003034 5.5e-21 106.7 83 56.6
EL10Ac7g17660 Beta vulgaris HOM05D007155 ORTHO05D003034 7.2e-21 106.3 87 55.2
Lalb_Chr02g0154121 Lupinus albus HOM05D007155 ORTHO05D003034 1.6e-20 105.1 81 61.7
SHI28075 Sapria himalayana HOM05D007155 ORTHO05D003034 1.6e-20 105.1 87 54.0
SGA_v2.0_scaffold341G49370 Striga asiatica HOM05D007155 ORTHO05D002534 3.6e-20 104.0 87 57.5
Lalb_Chr15g0083701 Lupinus albus HOM05D007155 ORTHO05D003034 6.1e-20 103.2 80 62.5
CSS0035815 Camellia sinensis var. sinensis HOM05D007155 ORTHO05D003034 7.9e-20 102.8 82 64.6
MELO3C021947.2 Cucumis melo HOM05D007155 ORTHO05D003034 3.0e-19 100.9 80 55.0
Sed0006212 Sechium edule HOM05D007155 ORTHO05D003034 6.7e-19 99.8 80 57.5
Migut.L00974 Erythranthe guttata HOM05D007155 ORTHO05D003034 2.0e-18 98.2 72 66.7
Haze_05247 Corylus avellana HOM05D007155 ORTHO05D003034 4.4e-18 97.1 70 64.3
CSS0017144 Camellia sinensis var. sinensis HOM05D007155 ORTHO05D003034 9.7e-18 95.9 77 64.9
ATR0794G139 Amborella trichopoda HOM05D007155 ORTHO05D003034 7.2e-13 79.7 80 48.8
Haze_05243 Corylus avellana HOM05D007155 ORTHO05D003034 2.7e-12 77.8 82 48.8
MBI02_g21862_MAGBIO Magnolia biondii HOM05D007155 ORTHO05D003034 4.7e-12 77.0 57 64.9
Os06g0499301 Oryza sativa ssp. japonica HOM05D007155 ORTHO05D003034 6.1e-12 76.6 87 48.3
HPP92_011144 Vanilla planifolia HOM05D007155 ORTHO05D003034 8.8e-11 72.8 88 43.2
Zm00001eb064820 Zea mays HOM05D007155 ORTHO05D003034 9.7e-10 69.3 86 44.2
Ah.09g237590 Amaranthus hybridus HOM05D002986 ORTHO05D007611 1.8e-08 65.1 79 40.5
Lj6g0015281 Lotus japonicus HOM05D002986 ORTHO05D007611 3.1e-08 64.3 80 40.0
CiPaw.10G052700 Carya illinoinensis HOM05D002986 ORTHO05D007611 5.3e-08 63.5 80 42.5
Dinv17357 Davidia involucrata HOM05D002986 ORTHO05D007611 5.3e-08 63.5 78 43.6
Potri.011G057900 Populus trichocarpa HOM05D002986 ORTHO05D007611 5.3e-08 63.5 80 41.2
Cc02_g13870 Coffea canephora HOM05D002986 ORTHO05D007611 9.1e-08 62.8 79 41.8
Dinv40602 Davidia involucrata HOM05D002986 ORTHO05D007611 9.1e-08 62.8 78 43.6
Eucgr.E03336 Eucalyptus grandis HOM05D002986 ORTHO05D007611 9.1e-08 62.8 75 42.7
HanXRQChr11g0346401 Helianthus annuus HOM05D002986 ORTHO05D007611 9.1e-08 62.8 78 39.7
DCAR_007997 Daucus carota HOM05D002986 ORTHO05D007611 1.2e-07 62.4 79 40.5
Atru.chr10.1787 Acer truncatum HOM05D002986 ORTHO05D007611 1.6e-07 62.0 78 43.6
Actinidia05655 Actinidia chinensis HOM05D002986 ORTHO05D007611 2.0e-07 61.6 78 42.3
EL10Ac8g20438 Beta vulgaris HOM05D002986 ORTHO05D007611 2.7e-07 61.2 72 43.1
TWI63G1258 Tripterygium wilfordii HOM05D002986 ORTHO05D007611 2.7e-07 61.2 80 41.2
Duzib235G0042 Durio zibethinus HOM05D002986 ORTHO05D007611 3.5e-07 60.8 78 41.0
Eucgr.E03144 Eucalyptus grandis HOM05D002986 ORTHO05D007611 3.5e-07 60.8 75 41.3
Lj7A254T21 Lonicera japonica HOM05D002986 ORTHO05D007611 4.5e-07 60.5 78 42.3
MD10G1288900 Malus domestica HOM05D002986 ORTHO05D007611 5.9e-07 60.1 80 37.5
Sabra11G0040100 Salix brachista HOM05D002986 ORTHO05D007611 5.9e-07 60.1 80 40.0
CDE09G0204 Ceratophyllum demersum HOM05D002986 ORTHO05D007611 7.7e-07 59.7 78 38.5
Sed0000822 Sechium edule HOM05D002986 ORTHO05D007611 7.7e-07 59.7 80 38.8
CDE04G3547 Ceratophyllum demersum HOM05D007155 ORTHO05D003034 1.0e-06 59.3 61 45.9
Glyma.13G235200 Glycine max HOM05D002986 ORTHO05D007611 1.3e-06 58.9 80 38.8
Lalb_Chr18g0059371 Lupinus albus HOM05D002986 ORTHO05D007611 1.3e-06 58.9 78 42.3
Phvul.010G102600 Phaseolus vulgaris HOM05D002986 ORTHO05D007611 1.3e-06 58.9 80 38.8
Gohir.A05G158800 Gossypium hirsutum HOM05D002986 ORTHO05D007611 1.7e-06 58.5 78 35.9
Nitab4.5_0002527g0080 Nicotiana tabacum HOM05D000716 ORTHO05D004822 1.7e-06 58.5 76 34.2
CsaV3_1G012580 Cucumis sativus L. HOM05D002986 ORTHO05D007611 2.2e-06 58.2 80 40.0
Oeu056521.1 Olea europaea HOM05D002986 ORTHO05D007611 2.2e-06 58.2 78 38.5
FAN11G0723 Fragaria x ananassa HOM05D002986 ORTHO05D007611 2.9e-06 57.8 80 37.5
Lj7A250T23 Lonicera japonica HOM05D002986 ORTHO05D007611 2.9e-06 57.8 78 41.0
Nitab4.5_0000307g0100 Nicotiana tabacum HOM05D002986 ORTHO05D000761 2.9e-06 57.8 76 34.2
TAR624G0084 Trochodendron aralioides HOM05D000029 ORTHO05D001395 2.9e-06 57.8 76 42.1
MSTRG.28276 Avicennia marina HOM05D002986 ORTHO05D003966 3.8e-06 57.4 75 38.7
CANSAT56G1279 Cannabis sativa HOM05D000891 ORTHO05D000761 3.8e-06 57.4 72 37.5
Nn3g21155 Nelumbo nucifera HOM05D000891 ORTHO05D000761 3.8e-06 57.4 71 45.1
CAN.G529.58 Capsicum annuum HOM05D002986 ORTHO05D007611 5.0e-06 57.0 76 43.4
TPR.G25962 Trifolium pratense HOM05D002986 ORTHO05D007611 5.0e-06 57.0 88 35.2
CARHR175750 Cardamine hirsuta HOM05D002986 ORTHO05D007611 6.5e-06 56.6 78 38.5
FAN16G0081 Fragaria x ananassa HOM05D002986 ORTHO05D007611 6.5e-06 56.6 80 36.2
Nn3g19229 Nelumbo nucifera HOM05D000891 ORTHO05D000761 6.5e-06 56.6 71 43.7
Thecc.06G180800 Theobroma cacao HOM05D002986 ORTHO05D007611 6.5e-06 56.6 78 39.7
Cpa.g.sc9.15 Carica papaya HOM05D007409 ORTHO05D009264 8.5e-06 56.2 80 35.0
ClCG03G008000 Citrullus lanatus HOM05D002986 ORTHO05D007611 8.5e-06 56.2 80 37.5
PGSC0003DMG400000242 Solanum tuberosum HOM05D002986 ORTHO05D009442 8.5e-06 56.2 76 32.9


User provided reference genes

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