Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 2.0e-107 392.5 202 100.0
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 1.3e-103 379.8 200 97.5
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 1.3e-103 379.8 202 96.5
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 1.0e-95 353.6 204 88.7
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 2.1e-77 292.7 203 76.4
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 1.4e-76 290.0 201 76.1
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 1.1e-73 280.4 203 73.9
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 3.2e-57 225.7 204 60.8
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 4.6e-56 221.9 211 61.1
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 6.0e-56 221.5 214 60.7
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 1.1e-54 217.2 196 63.8
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.2e-53 213.8 211 57.8
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 3.6e-53 212.2 205 61.0
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 1.8e-52 209.9 205 60.5
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 2.3e-52 209.5 206 59.7
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 2.9e-50 202.6 211 56.9
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 2.7e-48 196.1 205 55.6
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.5e-48 195.7 204 56.9
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 6.0e-48 194.9 202 56.4
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 6.0e-48 194.9 203 57.1
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 1.3e-47 193.7 205 58.5
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.3e-47 193.0 204 56.9
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.0e-47 192.6 203 54.7
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 3.9e-47 192.2 212 56.1
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 3.9e-47 192.2 212 56.1
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 1.5e-46 190.3 209 54.1
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 4.3e-46 188.7 195 60.0
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 9.6e-46 187.6 193 60.6
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.2e-45 187.2 203 54.2
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 3.6e-45 185.7 212 51.9
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 3.1e-44 182.6 206 55.3
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 4.0e-44 182.2 213 52.1
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 5.2e-44 181.8 194 53.6
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 1.5e-43 180.3 205 51.7
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 5.8e-43 178.3 213 52.1
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 1.1e-41 174.1 216 50.0
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.4e-41 173.7 190 52.1
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.4e-41 173.7 203 49.8
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.2e-40 170.6 216 51.9
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 1.6e-40 170.2 178 56.7
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 1.0e-39 167.5 210 49.5
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 3.0e-39 166.0 209 50.7
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 5.1e-39 165.2 210 53.3
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 6.6e-39 164.9 206 51.0
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 2.5e-38 162.9 203 50.7
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 2.1e-37 159.8 201 52.7
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 2.8e-37 159.5 193 48.2
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 6.2e-37 158.3 214 48.1
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 6.2e-37 158.3 193 52.8
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 1.4e-36 157.1 188 53.7
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 1.8e-36 156.8 201 46.8
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.4e-36 156.4 189 51.3
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 2.4e-36 156.4 194 51.5
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 6.9e-36 154.8 210 49.5
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 9.0e-36 154.5 202 48.5
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 7.6e-35 151.4 209 45.0
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 2.9e-34 149.4 205 43.9
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 8.4e-34 147.9 198 50.5
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 1.1e-33 147.5 176 55.7
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.9e-33 146.7 163 53.4
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 1.9e-33 146.7 192 46.9
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.4e-33 146.4 204 48.5
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.4e-33 146.4 204 48.5
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 4.2e-33 145.6 162 51.2
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 5.4e-33 145.2 207 48.3
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 5.4e-33 145.2 199 47.2
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 1.2e-32 144.1 223 47.5
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.2e-32 144.1 204 47.5
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.6e-32 143.7 203 48.8
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 2.7e-32 142.9 181 48.1
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 3.5e-32 142.5 216 44.9
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 6.0e-32 141.7 192 50.0
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 6.0e-32 141.7 193 50.8
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 1.3e-31 140.6 204 47.5
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 1.7e-31 140.2 178 47.8
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 2.3e-31 139.8 184 50.0
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 3.0e-31 139.4 204 46.1
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 3.0e-31 139.4 198 50.0
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.5e-30 137.1 185 47.6
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.5e-30 137.1 207 47.8
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 3.3e-30 136.0 216 45.4
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 3.3e-30 136.0 141 59.6
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 9.6e-30 134.4 172 51.2
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 1.3e-29 134.0 215 41.9
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 1.6e-29 133.7 201 42.8
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.6e-29 133.7 209 46.9
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 1.6e-29 133.7 208 42.3
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 8.1e-29 131.3 170 49.4
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 2.4e-28 129.8 166 51.2
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 5.3e-28 128.6 172 52.9
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 1.2e-27 127.5 203 43.3
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 2.6e-27 126.3 166 44.6
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 3.4e-27 125.9 204 44.1
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 4.5e-27 125.6 167 44.3
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 1.3e-26 124.0 188 45.7
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.9e-26 122.9 171 48.0
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 4.2e-25 119.0 209 47.4
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 9.3e-25 117.9 208 42.8
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 2.1e-24 116.7 207 38.6
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 7.9e-24 114.8 184 42.4
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.0e-23 114.4 193 45.6
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 2.3e-23 113.2 212 42.5
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 1.9e-22 110.2 203 41.9
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 1.9e-22 110.2 207 41.1
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 3.3e-22 109.4 197 43.1
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 7.4e-22 108.2 185 42.2
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 6.2e-21 105.1 169 46.7
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 8.1e-21 104.8 199 39.7
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 3.1e-20 102.8 224 38.4
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 2.6e-19 99.8 181 42.0
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 5.8e-19 98.6 169 39.6
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 2.2e-18 96.7 198 38.9
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 8.4e-18 94.7 184 43.5
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.1e-17 94.4 182 36.3
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 1.4e-17 94.0 141 44.7
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 1.4e-17 94.0 187 39.0
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 3.2e-17 92.8 193 39.4
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 4.2e-17 92.4 181 40.3
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 5.5e-17 92.0 198 37.9
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 2.1e-16 90.1 185 40.5
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 3.5e-16 89.4 184 41.8
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 3.5e-16 89.4 188 39.4
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 4.6e-16 89.0 189 40.2
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 4.6e-16 89.0 189 40.2
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 6.0e-16 88.6 189 38.6
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 1.0e-15 87.8 189 39.2
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 1.8e-15 87.0 185 39.5
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 4.3e-14 82.4 198 36.9
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 7.4e-14 81.6 198 36.9
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 9.6e-14 81.3 198 36.9
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 9.6e-14 81.3 198 36.9
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 1.3e-13 80.9 125 45.6
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 1.3e-13 80.9 156 40.4
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 1.6e-13 80.5 116 45.7
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 2.1e-13 80.1 197 37.1
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 2.1e-13 80.1 184 38.6
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 4.8e-13 79.0 190 36.8
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 8.2e-13 78.2 187 37.4
ClCG01G022190 Citrullus lanatus HOM05D004361 ORTHO05D004706 1.1e-12 77.8 202 33.2
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.1e-12 77.8 182 37.9
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 1.4e-12 77.4 201 36.3
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 3.1e-12 76.3 189 37.6
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 3.1e-12 76.3 193 37.3
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 4.1e-12 75.9 188 35.6
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 4.1e-12 75.9 181 35.9
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 9.0e-12 74.7 186 39.8
MELO3C032917.2 Cucumis melo HOM05D004361 ORTHO05D004706 2.0e-11 73.6 167 34.7
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 2.0e-11 73.6 135 42.2
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 3.4e-11 72.8 86 52.3
Gohir.A05G312801 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.0e-10 71.2 74 50.0
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 1.0e-10 71.2 52 67.3
TPR.G5514 Trifolium pratense HOM05D004361 ORTHO05D004706 2.5e-09 66.6 87 44.8
Gohir.A12G262800 Gossypium hirsutum HOM05D002183 ORTHO05D002169 3.2e-09 66.2 100 43.0
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 5.5e-09 65.5 220 31.4
TPR.G22022 Trifolium pratense HOM05D004361 ORTHO05D004706 5.5e-09 65.5 115 39.1
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 7.1e-09 65.1 105 41.9
ATR0762G059 Amborella trichopoda HOM05D009517 ORTHO05D011612 2.7e-08 63.2 194 30.4
Sed0009826 Sechium edule HOM05D004361 ORTHO05D004706 2.7e-08 63.2 187 30.5
Gohir.A05G327000 Gossypium hirsutum HOM05D002183 ORTHO05D004706 7.9e-08 61.6 96 41.7
Lsat_1_v5_gn_1_123061 Lactuca sativa HOM05D004361 ORTHO05D004706 3.0e-07 59.7 61 50.8
CDE05G3057 Ceratophyllum demersum HOM05D067338 ORTHO05D004706 1.5e-06 57.4 166 31.9
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 1.5e-06 57.4 82 41.5
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 1.5e-06 57.4 206 31.1
MBI06_g19436_MAGBIO Magnolia biondii HOM05D009517 ORTHO05D011612 1.9e-06 57.0 162 33.3
Prupe.1G343700 Prunus persica HOM05D009517 ORTHO05D011612 3.3e-06 56.2 152 32.2
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 4.3e-06 55.8 172 33.7


User provided reference genes

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