Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.0e-73 280.0 145 100.0
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 5.1e-25 118.2 114 64.0
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 2.5e-24 115.9 114 63.2
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.5e-24 115.9 114 63.2
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 3.3e-24 115.5 64 96.9
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 1.4e-22 110.2 114 59.6
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 2.5e-19 99.4 114 55.3
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 5.5e-19 98.2 98 60.2
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 3.5e-18 95.5 98 59.2
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 1.0e-17 94.0 64 76.6
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 1.3e-17 93.6 86 61.6
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 3.0e-17 92.4 64 73.4
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 3.9e-17 92.0 64 73.4
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 5.1e-17 91.7 64 71.9
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 5.1e-17 91.7 64 75.0
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 5.1e-17 91.7 121 46.3
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 6.7e-17 91.3 64 75.0
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 1.5e-16 90.1 64 73.4
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 1.9e-16 89.7 64 73.4
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 2.5e-16 89.4 64 73.4
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 3.3e-16 89.0 109 50.5
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 3.3e-16 89.0 64 71.9
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 5.7e-16 88.2 64 71.9
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 7.4e-16 87.8 64 71.9
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 7.4e-16 87.8 64 68.8
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 1.6e-15 86.7 64 68.8
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 1.6e-15 86.7 64 70.3
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 2.2e-15 86.3 109 49.5
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 2.2e-15 86.3 113 47.8
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 2.8e-15 85.9 65 73.8
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 3.7e-15 85.5 64 70.3
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 3.7e-15 85.5 64 70.3
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 6.3e-15 84.7 64 68.8
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 6.3e-15 84.7 64 68.8
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 6.3e-15 84.7 97 52.6
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 1.1e-14 84.0 66 66.7
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 1.1e-14 84.0 64 70.3
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 1.1e-14 84.0 64 67.2
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 1.4e-14 83.6 64 67.2
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 1.4e-14 83.6 64 67.2
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 1.4e-14 83.6 64 68.8
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 1.4e-14 83.6 64 68.8
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 2.4e-14 82.8 109 45.9
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 4.1e-14 82.0 64 65.6
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 5.3e-14 81.6 73 61.6
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 6.9e-14 81.3 64 65.6
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 9.0e-14 80.9 64 67.2
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 9.0e-14 80.9 64 67.2
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 9.0e-14 80.9 64 65.6
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.2e-13 80.5 64 65.6
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.2e-13 80.5 64 65.6
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 1.2e-13 80.5 64 67.2
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 1.5e-13 80.1 64 64.1
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 1.5e-13 80.1 64 65.6
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 1.5e-13 80.1 64 64.1
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 1.5e-13 80.1 64 70.3
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 1.5e-13 80.1 64 65.6
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 2.0e-13 79.7 64 65.6
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 2.0e-13 79.7 64 68.8
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 2.0e-13 79.7 98 54.1
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 2.6e-13 79.3 64 65.6
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 2.6e-13 79.3 64 65.6
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 2.6e-13 79.3 64 65.6
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 2.6e-13 79.3 64 65.6
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 2.6e-13 79.3 64 65.6
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 2.6e-13 79.3 64 64.1
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 2.6e-13 79.3 64 65.6
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 3.4e-13 79.0 64 64.1
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 4.5e-13 78.6 97 47.4
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 4.5e-13 78.6 64 64.1
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 5.9e-13 78.2 64 67.2
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 5.9e-13 78.2 64 67.2
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 5.9e-13 78.2 64 65.6
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 5.9e-13 78.2 64 60.9
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 1.0e-12 77.4 64 64.1
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 1.0e-12 77.4 64 65.6
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 1.3e-12 77.0 64 64.1
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 1.7e-12 76.6 64 67.2
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 2.2e-12 76.3 64 62.5
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 2.9e-12 75.9 64 64.1
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 3.8e-12 75.5 64 62.5
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 5.0e-12 75.1 64 60.9
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 8.5e-12 74.3 64 60.9
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.4e-11 73.6 65 60.0
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 1.6e-10 70.1 53 69.8
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 2.7e-10 69.3 64 59.4
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 3.9e-09 65.5 64 56.2
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 3.9e-09 65.5 64 56.2
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 5.1e-09 65.1 64 56.2
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 8.8e-09 64.3 85 48.2
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 1.1e-08 63.9 84 47.6
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 1.1e-08 63.9 84 45.2
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 2.0e-08 63.2 72 51.4
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 7.4e-08 61.2 65 53.8
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 1.3e-07 60.5 64 54.7
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 2.8e-07 59.3 49 65.3
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 1.8e-06 56.6 64 51.6
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 1.8e-06 56.6 64 50.0
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 5.3e-06 55.1 64 48.4
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 6.9e-06 54.7 81 44.4
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 9.1e-06 54.3 64 50.0
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 9.1e-06 54.3 64 51.6


User provided reference genes

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