Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G3257 Fragaria x ananassa HOM05D013845 ORTHO05D020717 6.8e-153 543.9 262 100.0
FAN21G2330 Fragaria x ananassa HOM05D013845 ORTHO05D020717 1.3e-140 503.1 259 94.6
FvH4_3g06320 Fragaria vesca HOM05D013845 ORTHO05D020717 3.9e-140 501.5 259 93.8
FAN16G0646 Fragaria x ananassa HOM05D013845 ORTHO05D020717 6.6e-140 500.7 259 93.1
FAN11G3254 Fragaria x ananassa HOM05D013845 ORTHO05D020717 4.3e-139 498.0 259 93.1
FAN19G2983 Fragaria x ananassa HOM05D013845 ORTHO05D020717 5.5e-70 268.5 198 75.3
RcHm_v2.0_Chr5g0012991 Rosa chinensis HOM05D013845 ORTHO05D020717 2.3e-55 219.9 172 70.3
FAN26G1343 Fragaria x ananassa HOM05D013845 ORTHO05D208412 4.3e-22 109.4 72 80.6
FAN28G0911 Fragaria x ananassa HOM05D013845 ORTHO05D203661 1.1e-20 104.8 72 77.8
FAN28G2760 Fragaria x ananassa HOM05D013845 ORTHO05D208717 1.1e-20 104.8 72 77.8
FAN13G3143 Fragaria x ananassa HOM05D006854 ORTHO05D029383 6.2e-13 79.0 244 31.6
FAN08G1170 Fragaria x ananassa HOM05D006854 ORTHO05D029383 1.1e-12 78.2 255 31.4
FvH4_5g06150 Fragaria vesca HOM05D006854 ORTHO05D029383 1.4e-12 77.8 255 31.4
FAN18G3992 Fragaria x ananassa HOM05D006854 ORTHO05D029383 1.4e-12 77.8 255 31.4
FvH4_6g41381 Fragaria vesca HOM05D006854 ORTHO05D035430 1.5e-11 74.3 203 33.0
QL10p016159 Quercus lobata HOM05D000082 ORTHO05D000038 2.2e-10 70.5 231 26.0
QL93p0043_0007 Quercus lobata HOM05D000082 ORTHO05D000038 2.2e-10 70.5 231 26.0
FvH4_3g45050 Fragaria vesca HOM05D006854 ORTHO05D035528 2.9e-10 70.1 215 30.2
RcHm_v2.0_Chr7g0194391 Rosa chinensis HOM05D006854 ORTHO05D035501 2.4e-09 67.0 281 27.4
FvH4_5g04570 Fragaria vesca HOM05D000082 ORTHO05D000038 9.3e-09 65.1 146 32.2
RcHm_v2.0_Chr5g0082881 Rosa chinensis HOM05D010503 ORTHO05D017963 1.6e-08 64.3 227 31.3
Manes.06G094900 Manihot esculenta HOM05D000082 ORTHO05D000038 3.5e-08 63.2 155 31.6
Cfa018969 Carpinus fangiana HOM05D000082 ORTHO05D000038 6.0e-08 62.4 210 28.6
PGR083G1769 Punica granatum HOM05D000082 ORTHO05D000038 6.0e-08 62.4 224 27.2
Haze_07353 Corylus avellana HOM05D000082 ORTHO05D000038 7.8e-08 62.0 211 29.4
FvH4_2g37010 Fragaria vesca HOM05D009507 ORTHO05D045780 7.8e-08 62.0 133 34.6
FAN08G2196 Fragaria x ananassa HOM05D006854 ORTHO05D011215 7.8e-08 62.0 158 32.9
FAN08G2487 Fragaria x ananassa HOM05D006854 ORTHO05D029560 7.8e-08 62.0 256 26.6
FAN21G2812 Fragaria x ananassa HOM05D010503 ORTHO05D017963 1.0e-07 61.6 132 35.6
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 1.7e-07 60.8 238 27.3
Potri.005G062400 Populus trichocarpa HOM05D000082 ORTHO05D000038 1.7e-07 60.8 139 28.8
RcHm_v2.0_Chr7g0194301 Rosa chinensis HOM05D006854 ORTHO05D022664 1.7e-07 60.8 295 26.4
TAR627G0325 Trochodendron aralioides HOM05D000082 ORTHO05D008126 1.7e-07 60.8 70 41.4
Carub.0005s2551 Capsella rubella HOM05D000082 ORTHO05D008126 3.0e-07 60.1 68 44.1
FAN08G3421 Fragaria x ananassa HOM05D000082 ORTHO05D000038 3.0e-07 60.1 144 29.2
RcHm_v2.0_Chr7g0180831 Rosa chinensis HOM05D000082 ORTHO05D000038 3.0e-07 60.1 143 28.7
Duzib205G0981 Durio zibethinus HOM05D000082 ORTHO05D000038 3.9e-07 59.7 152 28.9
TWI14G0047 Tripterygium wilfordii HOM05D000082 ORTHO05D008126 3.9e-07 59.7 68 48.5
FvH4_5g04830 Fragaria vesca HOM05D006854 ORTHO05D022664 5.1e-07 59.3 189 27.5
FAN13G1452 Fragaria x ananassa HOM05D000082 ORTHO05D000038 5.1e-07 59.3 144 29.2
FAN26G2829 Fragaria x ananassa HOM05D000082 ORTHO05D000038 5.1e-07 59.3 171 29.2
Prupe.8G048800 Prunus persica HOM05D000082 ORTHO05D000038 5.1e-07 59.3 245 27.8
Medtr4g080750 Medicago truncatula HOM05D000082 ORTHO05D008126 6.6e-07 58.9 76 42.1
Oeu018162.1 Olea europaea HOM05D001778 ORTHO05D006754 6.6e-07 58.9 77 37.7
Cc05_g08660 Coffea canephora HOM05D000082 ORTHO05D008126 8.7e-07 58.5 69 40.6
Dinv06195 Davidia involucrata HOM05D000082 ORTHO05D008126 8.7e-07 58.5 159 29.6
FAN19G2743 Fragaria x ananassa HOM05D000082 ORTHO05D000038 8.7e-07 58.5 171 29.2
Potri.014G139400 Populus trichocarpa HOM05D000082 ORTHO05D008126 8.7e-07 58.5 69 39.1
RcHm_v2.0_Chr7g0191221 Rosa chinensis HOM05D006854 ORTHO05D011215 8.7e-07 58.5 133 33.1
BcaC07g40220 Brassica carinata HOM05D000082 ORTHO05D008126 1.1e-06 58.2 74 39.2
FvH4_5g15260 Fragaria vesca HOM05D000082 ORTHO05D000038 1.1e-06 58.2 143 27.3
RcHm_v2.0_Chr7g0191591 Rosa chinensis HOM05D006854 ORTHO05D011215 1.1e-06 58.2 131 32.8
Sp5g04130 Schrenkiella parvula HOM05D000082 ORTHO05D008126 1.1e-06 58.2 94 34.0
FvH4_3g45070 Fragaria vesca HOM05D006854 ORTHO05D035528 1.5e-06 57.8 202 29.2
FAN02G0518 Fragaria x ananassa HOM05D000082 ORTHO05D000038 1.5e-06 57.8 158 29.7
FAN11G2503 Fragaria x ananassa HOM05D006854 ORTHO05D035528 1.5e-06 57.8 202 29.2
FvH4_5g04833 Fragaria vesca HOM05D006854 ORTHO05D029560 1.9e-06 57.4 271 26.6
HanXRQChr17g0558511 Helianthus annuus HOM05D000082 ORTHO05D008126 1.9e-06 57.4 72 38.9
RcHm_v2.0_Chr2g0175281 Rosa chinensis HOM05D000082 ORTHO05D000038 1.9e-06 57.4 155 32.3
Duzib251G0775 Durio zibethinus HOM05D000082 ORTHO05D008126 2.5e-06 57.0 73 37.0
FAN13G0959 Fragaria x ananassa HOM05D006854 ORTHO05D029560 2.5e-06 57.0 275 26.5
FAN18G2006 Fragaria x ananassa HOM05D000082 ORTHO05D000038 2.5e-06 57.0 143 27.3
Nitab4.5_0000249g0020 Nicotiana tabacum HOM05D000082 ORTHO05D008126 2.5e-06 57.0 69 43.5
Nitab4.5_0005922g0040 Nicotiana tabacum HOM05D000082 ORTHO05D008126 2.5e-06 57.0 69 43.5
QL08p042523 Quercus lobata HOM05D000082 ORTHO05D008126 2.5e-06 57.0 71 36.6
GSVIVG01020763001 Vitis vinifera HOM05D000082 ORTHO05D008126 2.5e-06 57.0 76 35.5
EL10Ac9g20992 Beta vulgaris HOM05D000082 ORTHO05D008126 3.3e-06 56.6 78 35.9
CSS0010644 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D008126 3.3e-06 56.6 68 36.8
CSS0043206 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D008126 3.3e-06 56.6 68 36.8
Psat7g161960 Pisum sativum HOM05D000082 ORTHO05D008126 3.3e-06 56.6 81 40.7
Sabra14G0105100 Salix brachista HOM05D000082 ORTHO05D008126 3.3e-06 56.6 69 36.2
ATR1089G158 Amborella trichopoda HOM05D021469 ORTHO05D014356 4.3e-06 56.2 56 50.0
Aqoxy1G01989 Aquilegia oxysepala HOM05D000082 ORTHO05D008126 4.3e-06 56.2 72 38.9
Ciclev10016257m.g Citrus clementina HOM05D000082 ORTHO05D008126 4.3e-06 56.2 67 37.3
Eucgr.B00460 Eucalyptus grandis HOM05D000082 ORTHO05D000038 4.3e-06 56.2 166 28.3
HanXRQChr13g0398701 Helianthus annuus HOM05D001689 ORTHO05D001643 4.3e-06 56.2 66 40.9
Psat7g162040 Pisum sativum HOM05D000082 ORTHO05D008126 4.3e-06 56.2 74 40.5
Prupe.6G084800 Prunus persica HOM05D000082 ORTHO05D000038 4.3e-06 56.2 240 25.4
Rhsim09G0124700 Rhododendron simsii HOM05D000990 ORTHO05D000810 4.3e-06 56.2 52 46.2
VMungo1127G0023 Vigna mungo HOM05D000082 ORTHO05D008126 4.3e-06 56.2 91 36.3
CSS0016945 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D000038 5.6e-06 55.8 63 39.7
CSS0024268 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D000038 5.6e-06 55.8 63 39.7
MD14G1195700 Malus domestica HOM05D000082 ORTHO05D000038 5.6e-06 55.8 181 29.8
Potri.006G190500 Populus trichocarpa HOM05D001778 ORTHO05D006754 5.6e-06 55.8 81 38.3
SHI18184 Sapria himalayana HOM05D000082 ORTHO05D000038 5.6e-06 55.8 143 31.5
AL5G40490 Arabidopsis lyrata HOM05D000082 ORTHO05D008126 7.3e-06 55.5 66 40.9
AT3G58720 Arabidopsis thaliana HOM05D000082 ORTHO05D008126 7.3e-06 55.5 88 36.4
CSS0019147 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D008126 7.3e-06 55.5 68 35.3
CSS0023801 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D008126 7.3e-06 55.5 68 35.3
Cfa027086 Carpinus fangiana HOM05D000082 ORTHO05D000038 7.3e-06 55.5 69 37.7
Ca_00830_v3 Cicer arietinum L. HOM05D000048 ORTHO05D000445 7.3e-06 55.5 110 30.0
FvH4_5g09840 Fragaria vesca HOM05D010503 ORTHO05D017963 7.3e-06 55.5 153 31.4
PGR031G2585 Punica granatum HOM05D000157 ORTHO05D000691 7.3e-06 55.5 67 37.3
RcHm_v2.0_Chr2g0171261 Rosa chinensis HOM05D000082 ORTHO05D000038 7.3e-06 55.5 183 28.4
RcHm_v2.0_Chr2g0171341 Rosa chinensis HOM05D000082 ORTHO05D000038 7.3e-06 55.5 179 28.5
Sed0010134 Sechium edule HOM05D000082 ORTHO05D008126 7.3e-06 55.5 81 34.6
Thecc.03G082200 Theobroma cacao HOM05D000082 ORTHO05D000038 7.3e-06 55.5 155 28.4
arahy.Tifrunner.gnm1.ann1.G4DYTJ Arachis hypogaea HOM05D008978 ORTHO05D010988 9.6e-06 55.1 62 38.7
Cc03_g03310 Coffea canephora HOM05D001689 ORTHO05D001643 9.6e-06 55.1 69 39.1
Thhalv10006182m.g Eutrema salsugineum HOM05D000082 ORTHO05D008126 9.6e-06 55.1 68 39.7
Rhsim01G0199700 Rhododendron simsii HOM05D000082 ORTHO05D026280 9.6e-06 55.1 66 36.4
RhsimUnG0091400 Rhododendron simsii HOM05D000082 ORTHO05D008126 9.6e-06 55.1 74 41.9
Sopen12g003430 Solanum pennellii HOM05D000082 ORTHO05D000038 9.6e-06 55.1 56 41.1


User provided reference genes

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