Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 4.3e-83 311.2 152 100.0
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 6.5e-23 111.3 111 57.7
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 6.5e-23 111.3 111 57.7
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 6.5e-23 111.3 111 57.7
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 8.5e-23 110.9 110 57.3
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.5e-22 110.2 111 56.8
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 4.7e-21 105.1 110 52.7
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 6.1e-21 104.8 111 55.0
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 8.0e-21 104.4 111 54.1
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 1.4e-20 103.6 116 54.3
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 1.8e-20 103.2 107 57.0
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 1.8e-20 103.2 104 57.7
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 1.8e-20 103.2 111 53.2
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 3.0e-20 102.4 104 56.7
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 3.0e-20 102.4 124 47.6
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 3.0e-20 102.4 111 51.4
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 5.2e-20 101.7 110 50.9
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 5.2e-20 101.7 111 52.3
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 5.2e-20 101.7 110 50.9
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 5.2e-20 101.7 107 55.1
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 6.8e-20 101.3 112 52.7
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 6.8e-20 101.3 111 50.5
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 6.8e-20 101.3 111 52.3
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 6.8e-20 101.3 118 51.7
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 6.8e-20 101.3 112 50.9
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 8.8e-20 100.9 111 51.4
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 8.8e-20 100.9 111 51.4
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 8.8e-20 100.9 111 50.5
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 8.8e-20 100.9 90 61.1
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 1.2e-19 100.5 118 51.7
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 1.5e-19 100.1 112 50.0
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 1.5e-19 100.1 111 52.3
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 2.0e-19 99.8 105 55.2
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 2.0e-19 99.8 111 54.1
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 2.6e-19 99.4 89 60.7
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 2.6e-19 99.4 108 51.9
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 3.4e-19 99.0 122 50.0
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 3.4e-19 99.0 122 50.0
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 5.7e-19 98.2 112 50.0
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 5.7e-19 98.2 112 50.0
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 5.7e-19 98.2 111 51.4
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 5.7e-19 98.2 111 51.4
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 7.5e-19 97.8 88 61.4
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 1.3e-18 97.1 111 50.5
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.7e-18 96.7 110 50.0
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 1.7e-18 96.7 111 50.5
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 1.7e-18 96.7 110 50.0
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 2.2e-18 96.3 104 57.7
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 2.8e-18 95.9 89 62.9
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 2.8e-18 95.9 121 47.9
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 2.8e-18 95.9 120 46.7
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 3.7e-18 95.5 110 52.7
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 3.7e-18 95.5 89 56.2
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 3.7e-18 95.5 87 63.2
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 6.3e-18 94.7 88 61.4
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 6.3e-18 94.7 103 56.3
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 6.3e-18 94.7 103 56.3
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 6.3e-18 94.7 111 48.6
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 8.3e-18 94.4 111 48.6
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 1.1e-17 94.0 118 49.2
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 1.1e-17 94.0 89 56.2
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 1.4e-17 93.6 88 58.0
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 1.8e-17 93.2 88 56.8
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 1.8e-17 93.2 109 48.6
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 2.4e-17 92.8 88 62.5
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 2.4e-17 92.8 88 58.0
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 2.4e-17 92.8 89 62.9
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 2.4e-17 92.8 111 47.7
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 2.4e-17 92.8 105 50.5
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 3.1e-17 92.4 111 53.2
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 3.1e-17 92.4 107 50.5
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 3.1e-17 92.4 106 48.1
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 3.1e-17 92.4 109 52.3
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 4.1e-17 92.0 110 46.4
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 4.1e-17 92.0 110 49.1
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 4.1e-17 92.0 89 61.8
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 7.0e-17 91.3 111 47.7
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 7.0e-17 91.3 122 45.9
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 9.2e-17 90.9 111 47.7
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 9.2e-17 90.9 85 63.5
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 9.2e-17 90.9 89 55.1
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 1.2e-16 90.5 105 53.3
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 1.2e-16 90.5 147 40.8
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 1.6e-16 90.1 89 61.8
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 2.0e-16 89.7 85 62.4
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 2.0e-16 89.7 85 62.4
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 3.5e-16 89.0 111 47.7
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 3.5e-16 89.0 106 48.1
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 4.5e-16 88.6 89 57.3
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 4.5e-16 88.6 109 47.7
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 5.9e-16 88.2 111 45.9
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 7.8e-16 87.8 89 52.8
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 1.0e-15 87.4 89 53.9
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 2.3e-15 86.3 104 47.1
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 3.8e-15 85.5 89 53.9
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 6.6e-15 84.7 109 45.0
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 1.9e-14 83.2 106 46.2
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 4.3e-14 82.0 89 51.7
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 4.3e-14 82.0 122 46.7
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 7.3e-14 81.3 106 43.4
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.6e-13 80.1 98 45.9
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 3.6e-13 79.0 116 44.0
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 4.7e-13 78.6 110 43.6
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 6.1e-13 78.2 118 41.5
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 1.0e-12 77.4 89 48.3
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 1.4e-12 77.0 99 46.5
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 6.4e-10 68.2 71 52.1
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 1.1e-09 67.4 71 52.1
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 1.8e-09 66.6 43 72.1
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 1.3e-07 60.5 93 38.7
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 1.9e-06 56.6 30 93.3
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 3.3e-06 55.8 100 34.0


User provided reference genes

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