Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G3013 Fragaria x ananassa HOM05D001622 ORTHO05D007320 8.7e-69 263.5 129 100.0
FvH4_3g15782 Fragaria vesca HOM05D000007 ORTHO05D000017 2.4e-50 202.2 135 78.5
FAN11G3461 Fragaria x ananassa HOM05D001622 ORTHO05D002989 1.2e-44 183.3 121 79.3
FAN16G1852 Fragaria x ananassa HOM05D001622 ORTHO05D002989 2.8e-43 178.7 134 73.1
FvH4_3g15800 Fragaria vesca HOM05D001622 ORTHO05D002989 3.7e-43 178.3 134 73.1
RcHm_v2.0_Chr5g0026591 Rosa chinensis HOM05D001622 ORTHO05D002989 1.8e-42 176.0 134 72.4
Prupe.4G139900 Prunus persica HOM05D001622 ORTHO05D002989 1.6e-38 162.9 134 67.9
MD10G1202300 Malus domestica HOM05D001622 ORTHO05D002989 4.4e-36 154.8 134 65.7
QL04p073801 Quercus lobata HOM05D001622 ORTHO05D002989 9.5e-31 137.1 134 59.7
Manes.06G171700 Manihot esculenta HOM05D001622 ORTHO05D002989 5.2e-29 131.3 134 58.2
Cfa019421 Carpinus fangiana HOM05D001622 ORTHO05D002989 6.8e-29 131.0 134 57.5
Glyma.15G255300 Glycine max HOM05D001622 ORTHO05D002989 6.8e-29 131.0 134 57.5
Glyma.08G171900 Glycine max HOM05D001622 ORTHO05D002989 2.6e-28 129.0 134 56.7
Haze_08544 Corylus avellana HOM05D001622 ORTHO05D002989 3.4e-28 128.6 134 56.0
Sabra11G0127900 Salix brachista HOM05D001622 ORTHO05D007320 5.7e-28 127.9 133 57.1
VMungo1080G1437 Vigna mungo HOM05D001622 ORTHO05D002989 7.5e-28 127.5 134 56.0
Cpa.g.sc10.46 Carica papaya HOM05D001622 ORTHO05D002989 1.3e-27 126.7 134 57.5
Potri.011G143200 Populus trichocarpa HOM05D001622 ORTHO05D002989 1.7e-27 126.3 131 57.3
Phvul.005G056800 Phaseolus vulgaris HOM05D001622 ORTHO05D002989 4.9e-27 124.8 134 55.2
Lalb_Chr25g0284981 Lupinus albus HOM05D001622 ORTHO05D002989 6.3e-27 124.4 134 55.2
Ciclev10019372m.g Citrus clementina HOM05D001622 ORTHO05D002989 3.1e-26 122.1 134 55.2
Duzib213G0698 Durio zibethinus HOM05D001622 ORTHO05D002989 4.5e-25 118.2 134 54.5
arahy.Tifrunner.gnm1.ann1.YED2LC Arachis hypogaea HOM05D001622 ORTHO05D002989 5.9e-25 117.9 134 53.0
CiPaw.12G006500 Carya illinoinensis HOM05D001622 ORTHO05D002989 7.8e-25 117.5 134 53.7
Ca_03678_v3 Cicer arietinum L. HOM05D001622 ORTHO05D002989 7.8e-25 117.5 135 52.6
Psat1g011000 Pisum sativum HOM05D001622 ORTHO05D002989 2.3e-24 115.9 135 51.9
arahy.Tifrunner.gnm1.ann1.6QNX53 Arachis hypogaea HOM05D001622 ORTHO05D002989 3.8e-24 115.2 134 52.2
FAN25G0914 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.8e-24 115.2 124 57.3
Lj3g0007468 Lotus japonicus HOM05D001622 ORTHO05D002989 3.8e-24 115.2 134 50.7
PGR083G2789 Punica granatum HOM05D001622 ORTHO05D002989 3.8e-24 115.2 136 51.5
Eucgr.F01455 Eucalyptus grandis HOM05D001622 ORTHO05D002989 6.6e-24 114.4 135 53.3
Atru.chr2.1771 Acer truncatum HOM05D001622 ORTHO05D002989 1.1e-23 113.6 135 54.1
Thecc.07G152700 Theobroma cacao HOM05D001622 ORTHO05D002989 7.3e-23 110.9 134 51.5
Gohir.A01G039200 Gossypium hirsutum HOM05D001622 ORTHO05D002989 2.1e-22 109.4 133 51.9
Gorai.002G036300 Gossypium raimondii HOM05D001622 ORTHO05D002989 4.7e-22 108.2 133 51.1
Sed0004782 Sechium edule HOM05D001622 ORTHO05D002989 1.4e-21 106.7 133 51.1
FvH4_3g15790 Fragaria vesca HOM05D001622 ORTHO05D000017 5.2e-21 104.8 115 55.7
Medtr2g069500 Medicago truncatula HOM05D001622 ORTHO05D002989 5.7e-20 101.3 135 48.1
ClCG11G016420 Citrullus lanatus HOM05D001622 ORTHO05D002989 7.5e-20 100.9 132 50.0
Sc20g0002950 Simmondsia chinensis HOM05D001622 ORTHO05D002989 9.8e-20 100.5 133 47.4
Actinidia35434 Actinidia chinensis HOM05D001622 ORTHO05D038144 1.3e-19 100.1 134 49.3
Rhsim06G0238700 Rhododendron simsii HOM05D001622 ORTHO05D002989 1.7e-19 99.8 134 48.5
CANSAT80G0507 Cannabis sativa HOM05D001622 ORTHO05D002989 2.9e-19 99.0 136 48.5
CsaV3_4G031870 Cucumis sativus L. HOM05D001622 ORTHO05D002989 2.9e-19 99.0 131 49.6
Sed0001522 Sechium edule HOM05D001622 ORTHO05D002989 2.9e-19 99.0 132 48.5
MELO3C026963.2 Cucumis melo HOM05D001622 ORTHO05D002989 4.9e-19 98.2 132 50.0
TAR626G1712 Trochodendron aralioides HOM05D001622 ORTHO05D002989 8.3e-19 97.4 130 46.2
DCAR_013739 Daucus carota HOM05D001622 ORTHO05D002989 5.4e-18 94.7 134 45.5
vmacro11662 Vaccinium macrocarpon HOM05D001622 ORTHO05D002989 7.0e-18 94.4 134 45.5
AUR62039162 Chenopodium quinoa HOM05D001622 ORTHO05D002989 1.2e-17 93.6 134 48.5
Actinidia37112 Actinidia chinensis HOM05D001622 ORTHO05D002989 2.7e-17 92.4 134 47.0
Ah.16g106550 Amaranthus hybridus HOM05D001622 ORTHO05D002989 3.5e-17 92.0 134 45.5
AUR62037639 Chenopodium quinoa HOM05D001622 ORTHO05D002989 7.8e-17 90.9 134 47.8
Hund12463 Selenicereus undatus HOM05D001622 ORTHO05D002989 1.0e-16 90.5 133 44.4
TWI38G0674 Tripterygium wilfordii HOM05D001622 ORTHO05D002989 1.0e-16 90.5 133 45.9
Oeu056980.1 Olea europaea HOM05D001622 ORTHO05D002989 1.7e-16 89.7 134 45.5
CSS0012937 Camellia sinensis var. sinensis HOM05D001622 ORTHO05D002989 2.3e-16 89.4 131 47.3
CSS0042878 Camellia sinensis var. sinensis HOM05D001622 ORTHO05D002989 2.3e-16 89.4 131 47.3
CiPaw.10G064900 Carya illinoinensis HOM05D001622 ORTHO05D002989 5.0e-16 88.2 132 42.4
Lj8A187T29 Lonicera japonica HOM05D001622 ORTHO05D002989 5.0e-16 88.2 142 43.7
TPR.G9741 Trifolium pratense HOM05D001622 ORTHO05D002989 8.6e-16 87.4 119 46.2
GSVIVG01020434001 Vitis vinifera HOM05D001622 ORTHO05D002989 1.5e-15 86.7 136 43.4
MSTRG.7058 Avicennia marina HOM05D001622 ORTHO05D002989 1.9e-15 86.3 132 46.2
CAN.G943.37 Capsicum annuum HOM05D001622 ORTHO05D002989 1.9e-15 86.3 134 41.0
SalBow8G0517 Salvia bowleyana HOM05D001622 ORTHO05D002989 1.9e-15 86.3 135 42.2
Sopen07g034620 Solanum pennellii HOM05D001622 ORTHO05D002989 1.9e-15 86.3 134 41.8
Oeu051664.1 Olea europaea HOM05D001622 ORTHO05D002989 4.3e-15 85.1 137 46.0
QL11p017794 Quercus lobata HOM05D001622 ORTHO05D002989 4.3e-15 85.1 133 39.1
Solyc07g066440.4 Solanum lycopersicum HOM05D001622 ORTHO05D002989 4.3e-15 85.1 134 41.0
PGSC0003DMG401022236 Solanum tuberosum HOM05D001622 ORTHO05D002989 4.3e-15 85.1 134 41.0
Nitab4.5_0001080g0050 Nicotiana tabacum HOM05D001622 ORTHO05D002989 5.6e-15 84.7 134 41.0
MBI18_g10615_MAGBIO Magnolia biondii HOM05D001622 ORTHO05D002989 7.3e-15 84.3 134 41.8
CSS0005401 Camellia sinensis var. sinensis HOM05D001622 ORTHO05D002989 1.6e-14 83.2 133 40.6
CSS0033502 Camellia sinensis var. sinensis HOM05D001622 ORTHO05D002989 1.6e-14 83.2 133 40.6
Peaxi162Scf00452g00835 Petunia axillaris HOM05D001622 ORTHO05D002989 2.1e-14 82.8 134 40.3
Cc05_g16050 Coffea canephora HOM05D001622 ORTHO05D002989 2.8e-14 82.4 135 45.9
Aqoxy1G01443 Aquilegia oxysepala HOM05D001622 ORTHO05D002989 3.6e-14 82.0 133 41.4
HanXRQChr13g0407931 Helianthus annuus HOM05D001622 ORTHO05D002989 6.2e-14 81.3 135 42.2
FAN16G2728 Fragaria x ananassa HOM05D001622 ORTHO05D199988 8.0e-14 80.9 41 87.8
HanXRQChr03g0078091 Helianthus annuus HOM05D001622 ORTHO05D002989 8.0e-14 80.9 139 42.4
Migut.M01558 Erythranthe guttata HOM05D001622 ORTHO05D002989 1.4e-13 80.1 137 44.5
CSS0035909 Camellia sinensis var. sinensis HOM05D001622 ORTHO05D002989 1.8e-13 79.7 134 41.0
MD05G1252600 Malus domestica HOM05D001622 ORTHO05D002989 4.0e-13 78.6 132 38.6
CiPaw.09G077800 Carya illinoinensis HOM05D001622 ORTHO05D002989 6.8e-13 77.8 131 38.9
Ciclev10014649m.g Citrus clementina HOM05D001622 ORTHO05D002989 6.8e-13 77.8 130 41.5
Dinv42512 Davidia involucrata HOM05D001622 ORTHO05D002989 6.8e-13 77.8 127 44.1
DCAR_003783 Daucus carota HOM05D001622 ORTHO05D002989 8.9e-13 77.4 131 39.7
GSVIVG01012074001 Vitis vinifera HOM05D001622 ORTHO05D002989 8.9e-13 77.4 132 36.4
Lalb_Chr16g0385241 Lupinus albus HOM05D001622 ORTHO05D002989 1.2e-12 77.0 128 39.1
RcHm_v2.0_Chr5g0020051 Rosa chinensis HOM05D001622 ORTHO05D002989 1.2e-12 77.0 132 39.4
Manes.16G057225 Manihot esculenta HOM05D001622 ORTHO05D002989 1.5e-12 76.6 136 36.8
Dinv01069 Davidia involucrata HOM05D001622 ORTHO05D002989 3.4e-12 75.5 126 42.1
Oeu056024.2 Olea europaea HOM05D001622 ORTHO05D002989 3.4e-12 75.5 131 37.4
Potri.012G121700 Populus trichocarpa HOM05D001622 ORTHO05D002989 3.4e-12 75.5 132 38.6
Atru.chr10.508 Acer truncatum HOM05D001622 ORTHO05D002989 5.8e-12 74.7 132 41.7
Atru.chr10.523 Acer truncatum HOM05D001622 ORTHO05D002989 5.8e-12 74.7 132 41.7
Actinidia22394 Actinidia chinensis HOM05D001622 ORTHO05D002989 7.5e-12 74.3 132 37.9
Nn7g38155 Nelumbo nucifera HOM05D001622 ORTHO05D002989 7.5e-12 74.3 132 39.4
Cfa000714 Carpinus fangiana HOM05D001622 ORTHO05D002989 9.8e-12 73.9 133 39.1
PSO541G1977 Papaver somniferum HOM05D001622 ORTHO05D002989 9.8e-12 73.9 135 37.8
HPP92_028558 Vanilla planifolia HOM05D001622 ORTHO05D002989 9.8e-12 73.9 130 40.0
Lsat_1_v5_gn_7_71040 Lactuca sativa HOM05D001622 ORTHO05D002989 1.7e-11 73.2 136 40.4
MD10G1233600 Malus domestica HOM05D001622 ORTHO05D002989 2.9e-11 72.4 132 37.1
Thecc.06G142000 Theobroma cacao HOM05D001622 ORTHO05D002989 2.9e-11 72.4 132 37.1
Dinv05965 Davidia involucrata HOM05D001622 ORTHO05D002989 4.9e-11 71.6 133 40.6
Gohir.D05G147699 Gossypium hirsutum HOM05D001622 ORTHO05D002989 4.9e-11 71.6 130 38.5
CANSAT35G0696 Cannabis sativa HOM05D001622 ORTHO05D002989 6.4e-11 71.2 132 40.9
COL.COLO4_30988 Corchorus olitorius HOM05D001622 ORTHO05D002989 6.4e-11 71.2 130 35.4
Gohir.D05G147500 Gossypium hirsutum HOM05D001622 ORTHO05D002989 6.4e-11 71.2 133 39.1
Prupe.4G111500 Prunus persica HOM05D001622 ORTHO05D002989 6.4e-11 71.2 132 37.1
PSO675G2869 Papaver somniferum HOM05D001622 ORTHO05D002989 8.3e-11 70.9 135 36.3
EL10Ac8g19194 Beta vulgaris HOM05D001622 ORTHO05D002989 1.1e-10 70.5 125 38.4
Nitab4.5_0001749g0030 Nicotiana tabacum HOM05D001622 ORTHO05D002989 1.1e-10 70.5 125 39.2
Gorai.009G151600 Gossypium raimondii HOM05D001622 ORTHO05D002989 1.4e-10 70.1 130 38.5
ECA240G1910 Erigeron canadensis HOM05D001622 ORTHO05D002989 4.1e-10 68.6 140 38.6
Sabra15G0137800 Salix brachista HOM05D001622 ORTHO05D002989 4.1e-10 68.6 132 37.1
TWI38G0188 Tripterygium wilfordii HOM05D001622 ORTHO05D002989 4.1e-10 68.6 136 37.5
Duzib192G0449 Durio zibethinus HOM05D001622 ORTHO05D002989 5.4e-10 68.2 132 37.1
Lj2A351T24 Lonicera japonica HOM05D001622 ORTHO05D002989 7.0e-10 67.8 135 37.0
Oeu050053.1 Olea europaea HOM05D001622 ORTHO05D002989 1.6e-09 66.6 128 36.7
Lj1A1144T49 Lonicera japonica HOM05D001622 ORTHO05D002989 3.5e-09 65.5 133 37.6
FvH4_3g12240 Fragaria vesca HOM05D001622 ORTHO05D002989 1.3e-08 63.5 132 36.4
FAN21G0494 Fragaria x ananassa HOM05D001622 ORTHO05D002989 1.3e-08 63.5 132 38.6
Duzib160G0174 Durio zibethinus HOM05D001622 ORTHO05D002989 1.7e-08 63.2 125 33.6
Glyma.20G020400 Glycine max HOM05D001622 ORTHO05D002989 1.7e-08 63.2 132 35.6
Cpa.g.sc135.14 Carica papaya HOM05D001622 ORTHO05D002989 2.3e-08 62.8 133 33.8
Gohir.D06G144800 Gossypium hirsutum HOM05D001622 ORTHO05D002989 2.3e-08 62.8 128 37.5
Glyma.07G222200 Glycine max HOM05D001622 ORTHO05D002989 3.0e-08 62.4 132 34.8
arahy.Tifrunner.gnm1.ann1.9MI9PY Arachis hypogaea HOM05D001622 ORTHO05D002989 3.9e-08 62.0 127 36.2
Cc00_g17380 Coffea canephora HOM05D001622 ORTHO05D002989 3.9e-08 62.0 124 35.5
FAN16G2364 Fragaria x ananassa HOM05D001622 ORTHO05D002989 6.6e-08 61.2 132 37.1
Lalb_Chr05g0219711 Lupinus albus HOM05D001622 ORTHO05D002989 6.6e-08 61.2 132 33.3
Nitab4.5_0008482g0010 Nicotiana tabacum HOM05D001622 ORTHO05D002989 6.6e-08 61.2 132 34.8
SGA_v2.0_scaffold186G40220 Striga asiatica HOM05D001622 ORTHO05D002989 6.6e-08 61.2 126 37.3
Gorai.010G168600 Gossypium raimondii HOM05D001622 ORTHO05D002989 8.6e-08 60.8 128 36.7
arahy.Tifrunner.gnm1.ann1.13DKAC Arachis hypogaea HOM05D001622 ORTHO05D002989 1.5e-07 60.1 127 35.4
FAN25G2269 Fragaria x ananassa HOM05D001622 ORTHO05D002989 1.5e-07 60.1 132 37.1
Medtr4g084020 Medicago truncatula HOM05D001622 ORTHO05D002989 1.5e-07 60.1 130 36.9
ATR0763G250 Amborella trichopoda HOM05D001622 ORTHO05D002989 2.5e-07 59.3 132 34.8
TPR.G20982 Trifolium pratense HOM05D001622 ORTHO05D002989 2.5e-07 59.3 136 36.8
CAN.G149.52 Capsicum annuum HOM05D001622 ORTHO05D002989 4.3e-07 58.5 134 35.8
PGR083G2758 Punica granatum HOM05D001622 ORTHO05D002989 1.6e-06 56.6 141 35.5
Gohir.A06G141200 Gossypium hirsutum HOM05D001622 ORTHO05D002989 2.8e-06 55.8 133 33.8
Lj4g0011915 Lotus japonicus HOM05D001622 ORTHO05D002989 3.6e-06 55.5 132 35.6
TWI38G0544 Tripterygium wilfordii HOM05D001622 ORTHO05D002989 3.6e-06 55.5 126 34.9


User provided reference genes

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