Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 3.4e-53 211.5 112 100.0
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 4.2e-51 204.5 110 96.4
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 1.1e-48 196.4 112 91.1
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 1.8e-33 146.0 100 79.0
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 5.7e-32 141.0 97 78.4
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 2.4e-30 135.6 91 78.0
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 2.4e-30 135.6 91 78.0
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 2.7e-26 122.1 101 59.4
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 6.1e-26 120.9 103 64.1
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.0e-25 120.2 96 67.7
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 3.0e-25 118.6 96 65.6
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 3.0e-25 118.6 94 67.0
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.9e-25 118.2 94 67.0
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 2.0e-24 115.9 96 64.6
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.6e-24 115.5 94 66.0
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 3.3e-24 115.2 101 62.4
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 7.4e-24 114.0 102 56.9
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 9.7e-24 113.6 101 63.4
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 1.3e-23 113.2 91 68.1
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 1.3e-23 113.2 98 67.3
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 1.7e-23 112.8 98 61.2
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 3.7e-23 111.7 89 68.5
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 1.1e-22 110.2 111 58.6
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 1.8e-22 109.4 102 56.9
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 4.1e-22 108.2 103 60.2
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 7.0e-22 107.5 106 56.6
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 7.0e-22 107.5 94 62.8
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 9.1e-22 107.1 79 72.2
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.6e-21 106.3 103 57.3
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 1.6e-21 106.3 95 58.9
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.0e-21 105.9 96 55.2
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 2.0e-21 105.9 92 66.3
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 2.6e-21 105.5 96 59.4
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 3.5e-21 105.1 93 64.5
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 7.7e-21 104.0 96 54.2
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 7.7e-21 104.0 96 54.2
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 1.0e-20 103.6 96 59.4
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 1.0e-20 103.6 99 58.6
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 1.0e-20 103.6 99 58.6
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 1.3e-20 103.2 97 56.7
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 1.3e-20 103.2 96 57.3
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 1.7e-20 102.8 96 58.3
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 1.1e-19 100.1 97 55.7
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 1.1e-19 100.1 92 57.6
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 1.1e-19 100.1 92 54.3
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.5e-19 99.8 95 63.2
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.5e-19 99.8 101 55.4
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 3.2e-19 98.6 96 60.4
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 3.2e-19 98.6 91 56.0
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 7.2e-19 97.4 87 65.5
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 7.2e-19 97.4 87 58.6
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 1.6e-18 96.3 101 53.5
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.7e-18 94.7 93 54.8
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 2.3e-17 92.4 100 57.0
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 2.3e-17 92.4 94 53.2
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 2.3e-17 92.4 101 52.5
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 3.0e-17 92.0 84 60.7
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 4.0e-17 91.7 94 56.4
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 6.7e-17 90.9 93 52.7
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 8.8e-17 90.5 94 56.4
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.2e-16 90.1 94 56.4
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 1.2e-16 90.1 82 58.5
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.5e-16 89.7 110 52.7
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 1.5e-16 89.7 86 57.0
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 1.5e-16 89.7 97 54.6
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.5e-16 89.7 85 55.3
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.5e-16 89.7 85 55.3
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 2.0e-16 89.4 83 62.7
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 3.3e-16 88.6 101 57.4
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 4.4e-16 88.2 97 52.6
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 7.5e-16 87.4 90 55.6
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 9.7e-16 87.0 101 51.5
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 1.3e-15 86.7 103 50.5
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.2e-15 85.9 93 50.5
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 2.8e-15 85.5 110 50.0
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.8e-15 85.5 101 50.5
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.8e-15 85.5 92 52.2
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 2.8e-15 85.5 108 47.2
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 6.3e-15 84.3 89 49.4
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 8.2e-15 84.0 101 50.5
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 8.2e-15 84.0 84 57.1
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 8.2e-15 84.0 99 49.5
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 8.2e-15 84.0 103 44.7
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 1.1e-14 83.6 99 56.6
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 3.1e-14 82.0 85 51.8
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 3.1e-14 82.0 85 51.8
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 1.2e-13 80.1 102 47.1
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.0e-13 79.3 76 55.3
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 1.0e-12 77.0 108 45.4
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.7e-12 76.3 87 51.7
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 2.2e-12 75.9 88 48.9
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.8e-12 75.1 82 53.7
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 6.5e-12 74.3 81 49.4
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 8.5e-12 73.9 73 63.0
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 8.5e-12 73.9 73 63.0
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 8.5e-12 73.9 77 54.5
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 1.5e-11 73.2 89 47.2
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.2e-11 72.0 84 50.0
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 3.2e-11 72.0 89 46.1
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 1.6e-10 69.7 100 43.0
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 2.1e-10 69.3 76 48.7
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 2.1e-10 69.3 83 47.0
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 2.7e-10 68.9 69 58.0
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 3.6e-10 68.6 77 44.2
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 4.7e-10 68.2 101 48.5
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 8.0e-10 67.4 86 46.5
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 1.0e-09 67.0 66 54.5
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 2.3e-09 65.9 90 46.7
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 4.0e-09 65.1 99 44.4
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 5.2e-09 64.7 67 56.7
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 8.8e-09 63.9 96 41.7
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 2.0e-08 62.8 99 43.4
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 3.4e-08 62.0 90 45.6
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 4.4e-08 61.6 84 46.4
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 7.5e-08 60.8 93 39.8
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 9.8e-08 60.5 90 42.2
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 9.8e-08 60.5 90 42.2
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 1.3e-07 60.1 99 42.4
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 1.3e-07 60.1 99 42.4
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 1.3e-07 60.1 86 43.0
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 2.2e-07 59.3 67 46.3
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 2.8e-07 58.9 90 47.8
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 3.7e-07 58.5 90 40.0
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 3.7e-07 58.5 99 42.4
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 3.7e-07 58.5 99 38.4
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 3.7e-07 58.5 99 38.4
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 6.3e-07 57.8 61 50.8
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 6.3e-07 57.8 80 42.5
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 6.3e-07 57.8 80 42.5
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 6.3e-07 57.8 80 42.5
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 8.3e-07 57.4 79 44.3
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 8.3e-07 57.4 67 44.8
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 8.3e-07 57.4 67 44.8
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 8.3e-07 57.4 80 45.0
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 8.3e-07 57.4 113 35.4
Aa31LG6G3890 Aethionema arabicum HOM05D005226 ORTHO05D004666 1.4e-06 56.6 82 45.1
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 1.4e-06 56.6 109 37.6
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 1.4e-06 56.6 67 43.3
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 1.4e-06 56.6 99 42.4
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 1.4e-06 56.6 67 43.3
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 1.8e-06 56.2 99 35.4
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 1.8e-06 56.2 81 45.7
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 2.4e-06 55.8 80 40.0
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 2.4e-06 55.8 104 36.5
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 3.1e-06 55.5 79 40.5
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 3.1e-06 55.5 67 46.3
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 4.1e-06 55.1 80 41.2
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 4.1e-06 55.1 90 42.2
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 4.1e-06 55.1 67 43.3
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 4.1e-06 55.1 91 38.5
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 7.0e-06 54.3 79 38.0
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 9.1e-06 53.9 67 43.3
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 9.1e-06 53.9 69 44.9
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 9.1e-06 53.9 69 44.9
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 9.1e-06 53.9 69 44.9
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 9.1e-06 53.9 78 43.6


User provided reference genes

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