Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G2725 Fragaria x ananassa HOM05D000426 ORTHO05D013835 7.2e-89 330.5 160 100.0
FAN25G1195 Fragaria x ananassa HOM05D000426 ORTHO05D013835 2.3e-87 325.5 159 98.7
FAN16G1036 Fragaria x ananassa HOM05D000426 ORTHO05D013835 6.1e-72 274.2 145 91.0
FAN21G0919 Fragaria x ananassa HOM05D000426 ORTHO05D013835 2.3e-71 272.3 145 90.3
FAN11G0026 Fragaria x ananassa HOM05D000426 ORTHO05D013835 1.5e-70 269.6 145 89.0
RcHm_v2.0_Chr5g0043861 Rosa chinensis HOM05D000426 ORTHO05D013835 3.0e-58 228.8 139 82.7
FvH4_3g24380 Fragaria vesca HOM05D000426 ORTHO05D013835 1.3e-50 203.4 105 92.4
MD01G1191100 Malus domestica HOM05D000426 ORTHO05D013835 5.5e-20 101.7 115 49.6
Prupe.2G285600 Prunus persica HOM05D000426 ORTHO05D013835 9.3e-20 100.9 117 52.1
Ciclev10006652m.g Citrus clementina HOM05D000426 ORTHO05D013835 2.8e-16 89.4 125 43.2
QL12p039099 Quercus lobata HOM05D000426 ORTHO05D000328 8.2e-16 87.8 84 48.8
Thecc.03G165200 Theobroma cacao HOM05D000426 ORTHO05D013835 1.1e-15 87.4 76 57.9
COL.COLO4_14212 Corchorus olitorius HOM05D000426 ORTHO05D000328 2.4e-15 86.3 114 46.5
ECA232G1277 Erigeron canadensis HOM05D000426 ORTHO05D000328 3.8e-13 79.0 83 44.6
CiPaw.04G064500 Carya illinoinensis HOM05D000426 ORTHO05D000328 1.1e-12 77.4 100 39.0
TAR636G3233 Trochodendron aralioides HOM05D000426 ORTHO05D000328 2.5e-12 76.3 72 47.2
Lsat_1_v5_gn_9_53561 Lactuca sativa HOM05D000426 ORTHO05D000328 3.5e-11 72.4 88 39.8
MBI17_g17490_MAGBIO Magnolia biondii HOM05D000426 ORTHO05D000328 6.1e-11 71.6 74 45.9
Nn1g01154 Nelumbo nucifera HOM05D000426 ORTHO05D000328 7.9e-11 71.2 71 46.5
COL.COLO4_14211 Corchorus olitorius HOM05D000426 ORTHO05D000328 2.3e-10 69.7 99 40.4
Atru.chr1.592 Acer truncatum HOM05D000426 ORTHO05D000328 3.9e-10 68.9 97 36.1
HanXRQChr13g0405491 Helianthus annuus HOM05D000426 ORTHO05D000328 3.9e-10 68.9 78 43.6
QL12p039107 Quercus lobata HOM05D000426 ORTHO05D000328 6.7e-10 68.2 71 45.1
TWI23G1097 Tripterygium wilfordii HOM05D000426 ORTHO05D000328 6.7e-10 68.2 111 37.8
Cfa008248 Carpinus fangiana HOM05D000426 ORTHO05D000328 8.7e-10 67.8 100 38.0
Haze_13803 Corylus avellana HOM05D000426 ORTHO05D000328 8.7e-10 67.8 100 38.0
Gohir.A12G263100 Gossypium hirsutum HOM05D000426 ORTHO05D000328 1.9e-09 66.6 104 35.6
Gorai.008G282600 Gossypium raimondii HOM05D000426 ORTHO05D000328 4.3e-09 65.5 97 34.0
Eucgr.A02858 Eucalyptus grandis HOM05D000426 ORTHO05D000328 7.4e-09 64.7 118 33.1
Gohir.D12G263600 Gossypium hirsutum HOM05D000426 ORTHO05D000328 7.4e-09 64.7 77 41.6
Lsat_1_v5_gn_8_8760 Lactuca sativa HOM05D000426 ORTHO05D000328 9.7e-09 64.3 102 35.3
HanXRQChr15g0486111 Helianthus annuus HOM05D000426 ORTHO05D000328 1.3e-08 63.9 74 41.9
Zm00001eb419870 Zea mays HOM05D000426 ORTHO05D000328 1.3e-08 63.9 98 38.8
Aqoxy7G00524 Aquilegia oxysepala HOM05D000426 ORTHO05D000328 1.6e-08 63.5 70 40.0
Manes.06G139900 Manihot esculenta HOM05D000426 ORTHO05D000328 1.6e-08 63.5 108 35.2
Ciclev10004981m.g Citrus clementina HOM05D000426 ORTHO05D000328 2.2e-08 63.2 106 34.0
Thhalv10015875m.g Eutrema salsugineum HOM05D000426 ORTHO05D000328 2.2e-08 63.2 96 37.5
Sabra15G0146200 Salix brachista HOM05D000426 ORTHO05D000328 2.2e-08 63.2 76 39.5
Thecc.03G165100 Theobroma cacao HOM05D000426 ORTHO05D000328 2.2e-08 63.2 100 34.0
GSVIVG01018464001 Vitis vinifera HOM05D000426 ORTHO05D000328 2.2e-08 63.2 76 38.2
Zm00001eb088070 Zea mays HOM05D000426 ORTHO05D000328 2.2e-08 63.2 83 43.4
Aa31LG3G8210 Aethionema arabicum HOM05D000426 ORTHO05D000328 2.8e-08 62.8 87 37.9
Duzib205G0975 Durio zibethinus HOM05D000426 ORTHO05D000328 2.8e-08 62.8 97 35.1
CsaV3_3G016530 Cucumis sativus L. HOM05D000426 ORTHO05D000328 3.7e-08 62.4 102 37.3
Hma1.2p1_0099F.1_g048780 Hydrangea macrophylla HOM05D000426 ORTHO05D000328 3.7e-08 62.4 72 43.1
CDE02G4253 Ceratophyllum demersum HOM05D000426 ORTHO05D000328 4.8e-08 62.0 99 35.4
PGR042G0268 Punica granatum HOM05D000426 ORTHO05D000328 4.8e-08 62.0 82 40.2
HanXRQChr05g0141351 Helianthus annuus HOM05D000426 ORTHO05D000328 8.2e-08 61.2 71 42.3
BcaB01g04157 Brassica carinata HOM05D000426 ORTHO05D000328 1.1e-07 60.8 80 40.0
BcaC01g06137 Brassica carinata HOM05D000426 ORTHO05D000328 1.1e-07 60.8 114 35.1
C03p18870 Brassica napus HOM05D000426 ORTHO05D000328 1.1e-07 60.8 114 35.1
BolC3t14278H Brassica oleracea HOM05D000426 ORTHO05D000328 1.1e-07 60.8 114 35.1
AT5G51760 Arabidopsis thaliana HOM05D000426 ORTHO05D000328 1.4e-07 60.5 109 33.0
Cc01_g13400 Coffea canephora HOM05D000426 ORTHO05D000328 1.4e-07 60.5 70 37.1
Sopen03g002930 Solanum pennellii HOM05D000426 ORTHO05D000328 1.4e-07 60.5 83 33.7
CSS0031264 Camellia sinensis var. sinensis HOM05D000426 ORTHO05D000328 1.8e-07 60.1 104 30.8
HPP92_008411 Vanilla planifolia HOM05D000426 ORTHO05D000328 1.8e-07 60.1 69 47.8
BraA03t10895Z Brassica rapa HOM05D000426 ORTHO05D000328 2.4e-07 59.7 166 27.1
MELO3C020601.2 Cucumis melo HOM05D000426 ORTHO05D000328 2.4e-07 59.7 71 39.4
Sp6g13980 Schrenkiella parvula HOM05D000426 ORTHO05D000328 2.4e-07 59.7 89 34.8
TAR369G1026 Trochodendron aralioides HOM05D000426 ORTHO05D000328 2.4e-07 59.7 71 42.3
Actinidia34429 Actinidia chinensis HOM05D000426 ORTHO05D000328 3.1e-07 59.3 68 39.7
A03p16040 Brassica napus HOM05D000426 ORTHO05D000328 3.1e-07 59.3 166 27.1
Nitab4.5_0000961g0010 Nicotiana tabacum HOM05D000426 ORTHO05D000328 3.1e-07 59.3 100 32.0
Actinidia13533 Actinidia chinensis HOM05D000426 ORTHO05D000328 4.1e-07 58.9 85 35.3
Ah.08g220130 Amaranthus hybridus HOM05D000426 ORTHO05D000328 4.1e-07 58.9 72 41.7
CsaV3_1G034580 Cucumis sativus L. HOM05D000426 ORTHO05D000328 4.1e-07 58.9 69 39.1
CSS0017116 Camellia sinensis var. sinensis HOM05D000426 ORTHO05D000328 5.3e-07 58.5 70 38.6
MELO3C006852.2 Cucumis melo HOM05D000426 ORTHO05D000328 5.3e-07 58.5 106 35.8
Lj8A79T98 Lonicera japonica HOM05D000426 ORTHO05D000328 5.3e-07 58.5 69 39.1
Nitab4.5_0000072g0040 Nicotiana tabacum HOM05D000426 ORTHO05D000328 5.3e-07 58.5 105 30.5
Nitab4.5_0000647g0160 Nicotiana tabacum HOM05D000426 ORTHO05D000328 5.3e-07 58.5 73 37.0
Peaxi162Scf00481g00048 Petunia axillaris HOM05D000426 ORTHO05D000328 5.3e-07 58.5 68 36.8
Solyc06g076400.3 Solanum lycopersicum HOM05D000426 ORTHO05D000328 5.3e-07 58.5 68 38.2
Sopen06g032810 Solanum pennellii HOM05D000426 ORTHO05D000328 5.3e-07 58.5 68 38.2
PGSC0003DMG400030332 Solanum tuberosum HOM05D000426 ORTHO05D000328 5.3e-07 58.5 68 38.2
Ca_08188_v3 Cicer arietinum L. HOM05D000426 ORTHO05D000328 6.9e-07 58.2 72 38.9
DCAR_007427 Daucus carota HOM05D000426 ORTHO05D000328 6.9e-07 58.2 79 35.4
Lsat_1_v5_gn_2_118601 Lactuca sativa HOM05D000426 ORTHO05D000328 6.9e-07 58.2 66 39.4
Solyc03g006930.3 Solanum lycopersicum HOM05D000426 ORTHO05D000328 6.9e-07 58.2 53 43.4
Zm00001eb367840 Zea mays HOM05D000426 ORTHO05D000328 6.9e-07 58.2 71 40.8
Actinidia13890 Actinidia chinensis HOM05D000426 ORTHO05D000328 9.0e-07 57.8 75 34.7
CAN.G394.77 Capsicum annuum HOM05D000426 ORTHO05D000328 9.0e-07 57.8 70 37.1
CiPaw.14G064800 Carya illinoinensis HOM05D000426 ORTHO05D000328 9.0e-07 57.8 133 27.8
Haze_24185 Corylus avellana HOM05D000426 ORTHO05D000328 9.0e-07 57.8 133 27.1
vmacro14560 Vaccinium macrocarpon HOM05D000426 ORTHO05D000328 9.0e-07 57.8 71 35.2
Dinv42996 Davidia involucrata HOM05D000426 ORTHO05D000328 1.2e-06 57.4 69 37.7
Dinv43101 Davidia involucrata HOM05D000426 ORTHO05D000328 1.2e-06 57.4 69 37.7
PGR102G0733 Punica granatum HOM05D000426 ORTHO05D000328 1.2e-06 57.4 70 38.6
Sabra16G0148600 Salix brachista HOM05D000426 ORTHO05D000328 1.2e-06 57.4 101 32.7
PGSC0003DMG400027196 Solanum tuberosum HOM05D000426 ORTHO05D000328 1.2e-06 57.4 71 35.2
Actinidia23916 Actinidia chinensis HOM05D000426 ORTHO05D000328 1.5e-06 57.0 68 38.2
Ah.10g037040 Amaranthus hybridus HOM05D000426 ORTHO05D000328 1.5e-06 57.0 83 38.6
Gohir.D10G234600 Gossypium hirsutum HOM05D000426 ORTHO05D000328 1.5e-06 57.0 71 39.4
Gorai.011G268200 Gossypium raimondii HOM05D000426 ORTHO05D000328 1.5e-06 57.0 71 39.4
Oeu022514.1 Olea europaea HOM05D000426 ORTHO05D000328 1.5e-06 57.0 72 33.3
Potri.001G245200 Populus trichocarpa HOM05D000426 ORTHO05D000328 1.5e-06 57.0 101 31.7
Sed0025126 Sechium edule HOM05D000426 ORTHO05D000328 1.5e-06 57.0 100 34.0
PGSC0003DMG400040671 Solanum tuberosum HOM05D000426 ORTHO05D000328 1.5e-06 57.0 72 38.9
Dinv16251 Davidia involucrata HOM05D000426 ORTHO05D000328 2.0e-06 56.6 75 36.0
Aqoxy1G00850 Aquilegia oxysepala HOM05D000426 ORTHO05D000328 2.6e-06 56.2 68 35.3
Cfa001426 Carpinus fangiana HOM05D000426 ORTHO05D000328 2.6e-06 56.2 80 35.0
MBI05_g35181_MAGBIO Magnolia biondii HOM05D000426 ORTHO05D000328 2.6e-06 56.2 68 41.2
Nitab4.5_0000463g0070 Nicotiana tabacum HOM05D000426 ORTHO05D000328 2.6e-06 56.2 68 35.3
Rhsim01G0232400 Rhododendron simsii HOM05D000426 ORTHO05D000328 2.6e-06 56.2 99 34.3
ATR0559G143 Amborella trichopoda HOM05D000426 ORTHO05D000328 3.4e-06 55.8 105 35.2
CARHR264640 Cardamine hirsuta HOM05D000426 ORTHO05D000328 3.4e-06 55.8 70 38.6
Cpa.g.sc19.272 Carica papaya HOM05D000426 ORTHO05D000328 3.4e-06 55.8 98 34.7
Cfa011573 Carpinus fangiana HOM05D000426 ORTHO05D000328 3.4e-06 55.8 128 27.3
Haze_17117 Corylus avellana HOM05D000426 ORTHO05D000328 3.4e-06 55.8 80 35.0
HanXRQChr10g0312771 Helianthus annuus HOM05D000426 ORTHO05D000328 3.4e-06 55.8 66 37.9
Nitab4.5_0008967g0020 Nicotiana tabacum HOM05D000426 ORTHO05D000328 3.4e-06 55.8 73 35.6
Nitab4.5_0009622g0010 Nicotiana tabacum HOM05D000426 ORTHO05D000328 3.4e-06 55.8 68 35.3
PSO339G4185 Papaver somniferum HOM05D000426 ORTHO05D000328 3.4e-06 55.8 68 36.8
Potri.009G037300 Populus trichocarpa HOM05D000426 ORTHO05D000328 3.4e-06 55.8 68 36.8
SalBow5G2542 Salvia bowleyana HOM05D000426 ORTHO05D000328 3.4e-06 55.8 67 38.8
HPP92_018047 Vanilla planifolia HOM05D000426 ORTHO05D000328 3.4e-06 55.8 103 32.0
Ciclev10031682m.g Citrus clementina HOM05D000426 ORTHO05D000328 4.5e-06 55.5 89 34.8
Eucgr.J02003 Eucalyptus grandis HOM05D000426 ORTHO05D000328 4.5e-06 55.5 68 38.2
Glyma.14G066400 Glycine max HOM05D000426 ORTHO05D000328 5.9e-06 55.1 72 37.5
Hund04916 Selenicereus undatus HOM05D000426 ORTHO05D000328 5.9e-06 55.1 71 38.0
AUR62001731 Chenopodium quinoa HOM05D000426 ORTHO05D000328 7.7e-06 54.7 77 36.4
AUR62020044 Chenopodium quinoa HOM05D000426 ORTHO05D000328 7.7e-06 54.7 77 36.4
ClCG03G001230 Citrullus lanatus HOM05D000426 ORTHO05D000328 7.7e-06 54.7 90 31.1
ClCG05G007620 Citrullus lanatus HOM05D000426 ORTHO05D000328 7.7e-06 54.7 79 38.0
Solyc03g006960.4 Solanum lycopersicum HOM05D000426 ORTHO05D000328 7.7e-06 54.7 54 38.9
Sopen05g031500 Solanum pennellii HOM05D000426 ORTHO05D000328 7.7e-06 54.7 71 33.8
Aqoxy3G02953 Aquilegia oxysepala HOM05D000426 ORTHO05D000328 1.0e-05 54.3 69 37.7
CDE02G0176 Ceratophyllum demersum HOM05D000426 ORTHO05D000328 1.0e-05 54.3 110 26.4
Glyma.02G250200 Glycine max HOM05D000426 ORTHO05D000328 1.0e-05 54.3 70 37.1
Hma1.2p1_0615F.1_g189640 Hydrangea macrophylla HOM05D000426 ORTHO05D000328 1.0e-05 54.3 68 36.8
PGR119G0228 Punica granatum HOM05D000426 ORTHO05D000328 1.0e-05 54.3 69 37.7
Sc11g0007720 Simmondsia chinensis HOM05D000426 ORTHO05D000328 1.0e-05 54.3 80 37.5
Sc21g0006050 Simmondsia chinensis HOM05D000426 ORTHO05D000328 1.0e-05 54.3 71 38.0


User provided reference genes

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