Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G2682 Fragaria x ananassa HOM05D007301 ORTHO05D002389 7.1e-68 260.4 124 100.0
FAN25G1308 Fragaria x ananassa HOM05D007301 ORTHO05D002389 2.6e-62 241.9 129 93.0
FAN25G3745 Fragaria x ananassa HOM05D007301 ORTHO05D002389 2.6e-62 241.9 129 93.0
FvH4_3g03190 Fragaria vesca HOM05D007301 ORTHO05D002389 3.9e-58 228.0 136 84.6
FAN21G3361 Fragaria x ananassa HOM05D007301 ORTHO05D002389 2.8e-56 221.9 138 82.6
RcHm_v2.0_Chr5g0004821 Rosa chinensis HOM05D007301 ORTHO05D002389 6.7e-42 174.1 129 71.3
Prupe.4G030800 Prunus persica HOM05D007301 ORTHO05D002389 2.1e-19 99.4 114 53.5
MD05G1334500 Malus domestica HOM05D007301 ORTHO05D002389 6.1e-19 97.8 118 50.8
TPR.G32659 Trifolium pratense HOM05D007301 ORTHO05D002389 8.8e-18 94.0 70 64.3
CiPaw.09G153900 Carya illinoinensis HOM05D007301 ORTHO05D002389 1.3e-16 90.1 63 65.1
Psat1g210680 Pisum sativum HOM05D007301 ORTHO05D002389 1.3e-16 90.1 78 56.4
Manes.16G015600 Manihot esculenta HOM05D007301 ORTHO05D002389 1.1e-15 87.0 62 61.3
COL.COLO4_31668 Corchorus olitorius HOM05D000687 ORTHO05D002389 1.4e-15 86.7 97 50.5
arahy.Tifrunner.gnm1.ann1.1PF2AY Arachis hypogaea HOM05D007301 ORTHO05D002389 3.1e-15 85.5 63 60.3
QL05p077842 Quercus lobata HOM05D007301 ORTHO05D002389 5.4e-15 84.7 124 44.4
Phvul.006G195200 Phaseolus vulgaris HOM05D007301 ORTHO05D002389 7.0e-15 84.3 74 58.1
Glyma.15G064200 Glycine max HOM05D007301 ORTHO05D002389 9.1e-15 84.0 131 41.2
Duzib235G0854 Durio zibethinus HOM05D007301 ORTHO05D002389 2.0e-14 82.8 78 52.6
TWI63G0057 Tripterygium wilfordii HOM05D007301 ORTHO05D002389 2.0e-14 82.8 110 47.3
Ciclev10016236m.g Citrus clementina HOM05D007301 ORTHO05D002389 2.7e-14 82.4 100 47.0
VMungo0540G0977 Vigna mungo HOM05D007301 ORTHO05D002389 2.7e-14 82.4 66 60.6
Ca_00213_v3 Cicer arietinum L. HOM05D007301 ORTHO05D002389 3.5e-14 82.0 87 47.1
Glyma.13G250000 Glycine max HOM05D007301 ORTHO05D002389 3.5e-14 82.0 115 45.2
Solyc02g079780.1 Solanum lycopersicum HOM05D007301 ORTHO05D002389 3.5e-14 82.0 67 52.2
Sopen02g024550 Solanum pennellii HOM05D007301 ORTHO05D002389 3.5e-14 82.0 67 52.2
PGSC0003DMG400021709 Solanum tuberosum HOM05D007301 ORTHO05D002389 3.5e-14 82.0 67 53.7
ClCG03G005250 Citrullus lanatus HOM05D007301 ORTHO05D002389 4.5e-14 81.6 87 44.8
Gohir.D06G126100 Gossypium hirsutum HOM05D007301 ORTHO05D002389 4.5e-14 81.6 75 56.0
Gorai.010G147000 Gossypium raimondii HOM05D007301 ORTHO05D002389 4.5e-14 81.6 75 56.0
Atru.chr10.2079 Acer truncatum HOM05D007301 ORTHO05D002389 7.7e-14 80.9 114 43.0
Cfa000294 Carpinus fangiana HOM05D007301 ORTHO05D002389 1.0e-13 80.5 111 43.2
CAN.G424.85 Capsicum annuum HOM05D007301 ORTHO05D002389 2.2e-13 79.3 66 54.5
Nitab4.5_0003045g0050 Nicotiana tabacum HOM05D007301 ORTHO05D002389 2.2e-13 79.3 63 54.0
Potri.011G032700 Populus trichocarpa HOM05D007301 ORTHO05D002389 2.2e-13 79.3 109 45.9
Atru.chr10.2091 Acer truncatum HOM05D007301 ORTHO05D002389 2.9e-13 79.0 114 42.1
Thecc.06G206100 Theobroma cacao HOM05D007301 ORTHO05D002389 5.0e-13 78.2 107 45.8
Haze_06639 Corylus avellana HOM05D007301 ORTHO05D002389 6.5e-13 77.8 63 60.3
Haze_06650 Corylus avellana HOM05D007301 ORTHO05D002389 6.5e-13 77.8 63 60.3
Sp1g10080 Schrenkiella parvula HOM05D007301 ORTHO05D002389 8.5e-13 77.4 91 42.9
CANSAT56G1725 Cannabis sativa HOM05D007301 ORTHO05D002389 1.1e-12 77.0 126 39.7
Eucgr.E03612 Eucalyptus grandis HOM05D007301 ORTHO05D002389 1.5e-12 76.6 120 35.0
Lj6g0023608 Lotus japonicus HOM05D007301 ORTHO05D002389 1.9e-12 76.3 64 57.8
AL1G22530 Arabidopsis lyrata HOM05D007301 ORTHO05D002389 4.2e-12 75.1 92 45.7
Medtr2g010980 Medicago truncatula HOM05D007301 ORTHO05D002389 4.2e-12 75.1 117 41.0
SalBow8G1107 Salvia bowleyana HOM05D007301 ORTHO05D002389 4.2e-12 75.1 68 52.9
SGA_v2.0_scaffold7G03899 Striga asiatica HOM05D007301 ORTHO05D002389 7.2e-12 74.3 107 43.0
MELO3C002521.2 Cucumis melo HOM05D007301 ORTHO05D002389 9.4e-12 73.9 138 34.8
Lalb_Chr15g0090181 Lupinus albus HOM05D007301 ORTHO05D002389 9.4e-12 73.9 113 39.8
Thhalv10009480m.g Eutrema salsugineum HOM05D007301 ORTHO05D002389 1.2e-11 73.6 66 53.0
GSVIVG01006515001 Vitis vinifera HOM05D007301 ORTHO05D002389 2.1e-11 72.8 61 52.5
Cc02_g11930 Coffea canephora HOM05D007301 ORTHO05D002389 3.6e-11 72.0 127 33.9
BcaB03g13255 Brassica carinata HOM05D007301 ORTHO05D002389 6.1e-11 71.2 72 52.8
AT1G11440 Arabidopsis thaliana HOM05D007301 ORTHO05D002389 8.0e-11 70.9 89 44.9
CSS0002302 Camellia sinensis var. sinensis HOM05D000603 ORTHO05D002642 8.0e-11 70.9 126 37.3
Peaxi162Scf00931g00032 Petunia axillaris HOM05D007301 ORTHO05D002389 1.0e-10 70.5 63 49.2
THA.LOC104809531 Tarenaya hassleriana HOM05D007301 ORTHO05D002389 1.8e-10 69.7 76 50.0
A06p08080 Brassica napus HOM05D007301 ORTHO05D002389 2.3e-10 69.3 66 53.0
BraA06t24007Z Brassica rapa HOM05D007301 ORTHO05D002389 2.3e-10 69.3 66 53.0
C05p09660 Brassica napus HOM05D007301 ORTHO05D002389 3.0e-10 68.9 66 53.0
BolC5t29707H Brassica oleracea HOM05D007301 ORTHO05D002389 3.0e-10 68.9 66 53.0
Sc05g0008310 Simmondsia chinensis HOM05D007301 ORTHO05D002389 3.0e-10 68.9 73 45.2
BcaC07g38666 Brassica carinata HOM05D007301 ORTHO05D002389 4.0e-10 68.6 66 50.0
BolC8t49099H Brassica oleracea HOM05D007301 ORTHO05D002389 4.0e-10 68.6 66 50.0
Aa31LG1G3280 Aethionema arabicum HOM05D007301 ORTHO05D002389 8.8e-10 67.4 72 47.2
A08p33460 Brassica napus HOM05D007301 ORTHO05D002389 8.8e-10 67.4 87 44.8
CARHR011720 Cardamine hirsuta HOM05D007301 ORTHO05D002389 8.8e-10 67.4 73 47.9
Sed0025707 Sechium edule HOM05D007301 ORTHO05D002389 8.8e-10 67.4 108 37.0
C08p14500 Brassica napus HOM05D007301 ORTHO05D002389 1.2e-09 67.0 89 43.8
BraA08t35262Z Brassica rapa HOM05D007301 ORTHO05D002389 1.2e-09 67.0 89 43.8
PGR042G3055 Punica granatum HOM05D007301 ORTHO05D002389 1.5e-09 66.6 117 38.5
Migut.M01248 Erythranthe guttata HOM05D007301 ORTHO05D002389 2.6e-09 65.9 88 43.2
CsaV3_1G011450 Cucumis sativus L. HOM05D007301 ORTHO05D002389 3.4e-09 65.5 108 36.1
Nn2g15924 Nelumbo nucifera HOM05D007301 ORTHO05D002389 3.4e-09 65.5 83 42.2
AUR62014643 Chenopodium quinoa HOM05D007301 ORTHO05D002389 4.4e-09 65.1 76 42.1
EL10As6g23651 Beta vulgaris HOM05D007301 ORTHO05D002389 5.7e-09 64.7 84 42.9
Carub.0001s1106 Capsella rubella HOM05D007301 ORTHO05D002389 5.7e-09 64.7 88 44.3
BcaC05g25022 Brassica carinata HOM05D007301 ORTHO05D002389 1.7e-08 63.2 61 52.5
Hma1.2p1_0809F.1_g221835 Hydrangea macrophylla HOM05D007301 ORTHO05D002389 1.7e-08 63.2 90 41.1
Oeu050575.1 Olea europaea HOM05D007301 ORTHO05D002389 1.7e-08 63.2 80 41.2
Dinv17861 Davidia involucrata HOM05D007301 ORTHO05D002389 2.8e-08 62.4 129 34.9
Atru.chr10.2080 Acer truncatum HOM05D007301 ORTHO05D002389 6.3e-08 61.2 126 36.5
Cpa.g.sc871.4 Carica papaya HOM05D007301 ORTHO05D002389 6.3e-08 61.2 96 39.6
Ah.09g236990 Amaranthus hybridus HOM05D007301 ORTHO05D002389 8.3e-08 60.8 77 41.6
AUR62012556 Chenopodium quinoa HOM05D007301 ORTHO05D002389 1.1e-07 60.5 121 35.5
Ah.14g088560 Amaranthus hybridus HOM05D007301 ORTHO05D002389 1.4e-07 60.1 102 37.3
Actinidia26967 Actinidia chinensis HOM05D007301 ORTHO05D002389 1.8e-07 59.7 65 49.2
Gohir.A06G122000 Gossypium hirsutum HOM05D007301 ORTHO05D002389 1.8e-07 59.7 105 41.0
ECA248G1972 Erigeron canadensis HOM05D007301 ORTHO05D002389 2.4e-07 59.3 62 43.5
TAR623G0342 Trochodendron aralioides HOM05D007301 ORTHO05D002389 4.1e-07 58.5 65 49.2
Sabra11G0025900 Salix brachista HOM05D007301 ORTHO05D002389 1.6e-06 56.6 66 43.9


User provided reference genes

Program Settings