Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G2652 Fragaria x ananassa HOM05D000372 ORTHO05D023325 8.5e-108 393.7 196 100.0
FvH4_3g03620 Fragaria vesca HOM05D000372 ORTHO05D000948 7.0e-102 374.0 192 95.8
FAN11G2934 Fragaria x ananassa HOM05D000372 ORTHO05D000948 3.5e-101 371.7 192 95.3
FAN16G0442 Fragaria x ananassa HOM05D000372 ORTHO05D000948 5.9e-101 370.9 192 95.3
FAN21G2886 Fragaria x ananassa HOM05D000372 ORTHO05D000948 5.4e-94 347.8 192 92.2
FAN05G2042 Fragaria x ananassa HOM05D000372 ORTHO05D000948 2.5e-91 339.0 195 87.2
FAN14G3849 Fragaria x ananassa HOM05D000372 ORTHO05D000948 1.6e-90 336.3 195 87.2
RcHm_v2.0_Chr2g0156741 Rosa chinensis HOM05D000372 ORTHO05D000948 2.6e-88 328.9 195 84.1
FAN02G2850 Fragaria x ananassa HOM05D000372 ORTHO05D000948 2.4e-86 322.4 195 84.6
FAN09G3350 Fragaria x ananassa HOM05D000372 ORTHO05D000948 4.5e-85 318.2 195 83.6
Prupe.3G201700 Prunus persica HOM05D000372 ORTHO05D000948 1.7e-68 263.1 192 68.8
MD09G1121900 Malus domestica HOM05D000372 ORTHO05D000948 4.7e-58 228.4 195 62.6
MD17G1113000 Malus domestica HOM05D000372 ORTHO05D000948 1.2e-48 197.2 196 54.6
GSVIVG01030058001 Vitis vinifera HOM05D000372 ORTHO05D000948 1.9e-46 189.9 188 55.9
QL08p028699 Quercus lobata HOM05D000372 ORTHO05D000948 4.3e-43 178.7 198 49.0
CiPaw.03G278600 Carya illinoinensis HOM05D000372 ORTHO05D000948 7.3e-43 177.9 185 50.8
CiPaw.04G196100 Carya illinoinensis HOM05D000372 ORTHO05D000948 4.8e-42 175.3 186 50.0
Sabra14G0125400 Salix brachista HOM05D000372 ORTHO05D000948 2.4e-41 172.9 188 52.1
Potri.014G164700 Populus trichocarpa HOM05D000372 ORTHO05D000948 5.3e-41 171.8 188 50.5
Dinv05354 Davidia involucrata HOM05D000372 ORTHO05D000948 3.4e-40 169.1 197 48.7
Manes.13G063800 Manihot esculenta HOM05D000372 ORTHO05D000948 1.1e-38 164.1 173 50.9
Cpa.g.sc136.21 Carica papaya HOM05D000372 ORTHO05D023325 1.4e-38 163.7 200 48.0
Cfa014243 Carpinus fangiana HOM05D000372 ORTHO05D000948 1.4e-38 163.7 190 47.9
Thecc.01G190700 Theobroma cacao HOM05D000372 ORTHO05D000948 5.4e-38 161.8 187 47.1
Dinv21275 Davidia involucrata HOM05D000372 ORTHO05D000948 4.6e-37 158.7 196 48.0
Haze_12690 Corylus avellana HOM05D000372 ORTHO05D000948 2.3e-36 156.4 161 50.9
Manes.12G061600 Manihot esculenta HOM05D000372 ORTHO05D000948 3.0e-36 156.0 182 47.3
CANSAT64G0551 Cannabis sativa HOM05D000372 ORTHO05D000948 8.1e-34 147.9 191 46.1
TAR627G0907 Trochodendron aralioides HOM05D000372 ORTHO05D000948 1.4e-33 147.1 188 46.3
Duzib138G1724 Durio zibethinus HOM05D000372 ORTHO05D000948 4.0e-33 145.6 177 44.6
Gohir.A11G149900 Gossypium hirsutum HOM05D000372 ORTHO05D000948 2.6e-32 142.9 188 43.6
COL.COLO4_33016 Corchorus olitorius HOM05D000372 ORTHO05D000948 9.9e-32 141.0 187 40.6
Ciclev10014068m.g Citrus clementina HOM05D000372 ORTHO05D000948 2.2e-31 139.8 192 46.9
FvH4_6g41180 Fragaria vesca HOM05D000372 ORTHO05D000948 2.9e-31 139.4 78 87.2
Gorai.007G166900 Gossypium raimondii HOM05D000372 ORTHO05D000948 5.5e-30 135.2 188 42.0
Atru.chr6.3356 Acer truncatum HOM05D000372 ORTHO05D000948 1.6e-29 133.7 190 47.4
Gohir.D11G156400 Gossypium hirsutum HOM05D000372 ORTHO05D000948 3.5e-29 132.5 188 41.0
Actinidia21441 Actinidia chinensis HOM05D000372 ORTHO05D000948 4.6e-29 132.1 179 45.8
Eucgr.A01042 Eucalyptus grandis HOM05D000372 ORTHO05D000948 2.5e-27 126.3 184 41.3
Nitab4.5_0001774g0030 Nicotiana tabacum HOM05D000372 ORTHO05D000948 2.8e-26 122.9 170 39.4
Gohir.D07G172100 Gossypium hirsutum HOM05D000372 ORTHO05D000948 2.4e-25 119.8 165 44.8
Gohir.A07G166800 Gossypium hirsutum HOM05D000372 ORTHO05D000948 3.1e-25 119.4 177 41.8
Gorai.001G192400 Gossypium raimondii HOM05D000372 ORTHO05D000948 4.0e-25 119.0 166 45.2
CAN.G1036.13 Capsicum annuum HOM05D000372 ORTHO05D000948 9.0e-25 117.9 174 39.1
Nitab4.5_0001701g0010 Nicotiana tabacum HOM05D000372 ORTHO05D000948 9.0e-25 117.9 170 38.2
Solyc07g047770.4 Solanum lycopersicum HOM05D000372 ORTHO05D000948 9.0e-25 117.9 176 40.9
Lj1A793T49 Lonicera japonica HOM05D000372 ORTHO05D000948 1.7e-23 113.6 202 38.6
Sopen07g024210 Solanum pennellii HOM05D000372 ORTHO05D000948 3.2e-22 109.4 166 41.6
Lalb_Chr04g0247261 Lupinus albus HOM05D000372 ORTHO05D000948 3.0e-20 102.8 191 40.3
Peaxi162Scf00776g00011 Petunia axillaris HOM05D000372 ORTHO05D000948 5.1e-20 102.1 160 38.8
Glyma.02G305900 Glycine max HOM05D000372 ORTHO05D000948 1.1e-19 100.9 188 37.2
LjContig00081g0007941 Lotus japonicus HOM05D000372 ORTHO05D000948 1.5e-19 100.5 171 41.5
Sed0006258 Sechium edule HOM05D000372 ORTHO05D000948 1.5e-19 100.5 204 35.3
arahy.Tifrunner.gnm1.ann1.17357K Arachis hypogaea HOM05D000372 ORTHO05D000948 3.3e-19 99.4 174 41.4
Actinidia03614 Actinidia chinensis HOM05D000372 ORTHO05D023325 5.7e-19 98.6 139 42.4
arahy.Tifrunner.gnm1.ann1.X8JHA4 Arachis hypogaea HOM05D000372 ORTHO05D000948 1.6e-18 97.1 174 40.8
Sed0020999 Sechium edule HOM05D000372 ORTHO05D000948 1.6e-18 97.1 200 35.5
Glyma.14G007100 Glycine max HOM05D000372 ORTHO05D000948 8.2e-18 94.7 188 34.6
MELO3C025982.2 Cucumis melo HOM05D000372 ORTHO05D000948 1.1e-17 94.4 200 34.0
Sed0006248 Sechium edule HOM05D000372 ORTHO05D000948 1.4e-17 94.0 161 37.3
Nn1g07465 Nelumbo nucifera HOM05D000372 ORTHO05D000948 1.8e-17 93.6 172 34.9
ClCG02G009380 Citrullus lanatus HOM05D000372 ORTHO05D000948 2.4e-17 93.2 172 38.4
Phvul.008G285800 Phaseolus vulgaris HOM05D000372 ORTHO05D000948 3.1e-17 92.8 188 33.0
VMungo0647G1660 Vigna mungo HOM05D000372 ORTHO05D000948 3.1e-17 92.8 188 32.4
DCAR_019705 Daucus carota HOM05D000372 ORTHO05D000948 9.0e-17 91.3 186 33.9
Cc05_g02360 Coffea canephora HOM05D000372 ORTHO05D000948 1.2e-16 90.9 198 34.8
Aqoxy4G02228 Aquilegia oxysepala HOM05D000372 ORTHO05D000948 1.5e-16 90.5 207 34.3
CsaV3_6G009450 Cucumis sativus L. HOM05D000372 ORTHO05D000948 2.0e-16 90.1 163 38.7
Oeu040466.1 Olea europaea HOM05D000372 ORTHO05D000948 4.5e-16 89.0 199 32.2
Duzib133G0898 Durio zibethinus HOM05D000372 ORTHO05D000948 4.2e-14 82.4 150 38.7
MBI19_g25588_MAGBIO Magnolia biondii HOM05D000372 ORTHO05D000948 4.2e-14 82.4 159 34.6
Ca_06460_v3 Cicer arietinum L. HOM05D000372 ORTHO05D000948 1.2e-13 80.9 174 35.1
Oeu012346.1 Olea europaea HOM05D000372 ORTHO05D000948 2.7e-13 79.7 199 31.2
Lsat_1_v5_gn_5_121700 Lactuca sativa HOM05D000372 ORTHO05D000948 1.8e-12 77.0 196 32.1
Medtr5g097410 Medicago truncatula HOM05D000372 ORTHO05D000948 1.8e-12 77.0 164 39.6
TWI18G1312 Tripterygium wilfordii HOM05D000372 ORTHO05D000948 3.0e-12 76.3 160 34.4
CSS0046144 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D000948 1.5e-11 73.9 159 37.7
Psat2g004360 Pisum sativum HOM05D000372 ORTHO05D000948 2.5e-11 73.2 173 35.3
ClCG02G002700 Citrullus lanatus HOM05D000372 ORTHO05D000948 4.3e-11 72.4 199 33.2
ATR0624G062 Amborella trichopoda HOM05D000372 ORTHO05D000948 5.7e-11 72.0 123 37.4
TWI36G1281 Tripterygium wilfordii HOM05D000372 ORTHO05D000948 5.7e-11 72.0 160 34.4
Lsat_1_v5_gn_7_95341 Lactuca sativa HOM05D000372 ORTHO05D000948 9.7e-11 71.2 177 34.5
Lalb_Chr17g0349101 Lupinus albus HOM05D000372 ORTHO05D000948 1.7e-10 70.5 159 35.2
A03p44530 Brassica napus HOM05D000372 ORTHO05D000948 2.8e-10 69.7 132 35.6
BraA03t13586Z Brassica rapa HOM05D000372 ORTHO05D000948 2.8e-10 69.7 132 35.6
HanXRQChr10g0306861 Helianthus annuus HOM05D000372 ORTHO05D000948 2.8e-10 69.7 195 28.7
Sp3g23540 Schrenkiella parvula HOM05D000372 ORTHO05D000948 4.8e-10 68.9 166 34.3
THA.LOC104815356 Tarenaya hassleriana HOM05D000372 ORTHO05D000948 4.8e-10 68.9 151 33.1
ATR0561G280 Amborella trichopoda HOM05D000372 ORTHO05D000948 8.2e-10 68.2 138 34.1
Rhsim04G0038300 Rhododendron simsii HOM05D000372 ORTHO05D000948 8.2e-10 68.2 152 35.5
Aa31sc107G20 Aethionema arabicum HOM05D000372 ORTHO05D000948 1.4e-09 67.4 131 32.8
CSS0046207 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D000948 1.4e-09 67.4 129 38.8
HanXRQChr12g0373961 Helianthus annuus HOM05D000372 ORTHO05D000948 1.4e-09 67.4 171 34.5
MSTRG.12242 Avicennia marina HOM05D000372 ORTHO05D000948 1.8e-09 67.0 169 35.5
BcaC01g03182 Brassica carinata HOM05D000372 ORTHO05D000948 1.8e-09 67.0 132 34.8
C03p55330 Brassica napus HOM05D000372 ORTHO05D000948 1.8e-09 67.0 132 34.8
BolC3t17805H Brassica oleracea HOM05D000372 ORTHO05D000948 1.8e-09 67.0 132 34.8
TPR.G1286 Trifolium pratense HOM05D000372 ORTHO05D000948 1.8e-09 67.0 156 34.6
PSO675G5505 Papaver somniferum HOM05D000372 ORTHO05D000948 5.3e-09 65.5 158 29.7
Sc21g0000660 Simmondsia chinensis HOM05D000372 ORTHO05D000948 5.3e-09 65.5 159 34.0
Sc21g0000710 Simmondsia chinensis HOM05D000372 ORTHO05D000948 5.3e-09 65.5 159 34.0
Lalb_Chr00c63g0413831 Lupinus albus HOM05D000372 ORTHO05D023325 2.0e-08 63.5 78 43.6
Eucgr.H04632 Eucalyptus grandis HOM05D000372 ORTHO05D000948 2.6e-08 63.2 160 32.5
CARHR216810 Cardamine hirsuta HOM05D000372 ORTHO05D000948 5.9e-08 62.0 131 32.1
Cpa.g.sc136.20 Carica papaya HOM05D000372 ORTHO05D000948 5.9e-08 62.0 175 31.4
Gohir.D12G153100 Gossypium hirsutum HOM05D000372 ORTHO05D000948 5.9e-08 62.0 185 26.5
Gorai.008G165600 Gossypium raimondii HOM05D000372 ORTHO05D000948 5.9e-08 62.0 185 26.5
Sabra01G0041600 Salix brachista HOM05D000372 ORTHO05D000948 5.9e-08 62.0 178 29.2
SHI10137 Sapria himalayana HOM05D000372 ORTHO05D000948 5.9e-08 62.0 178 28.7
AT5G35750 Arabidopsis thaliana HOM05D000372 ORTHO05D000948 1.0e-07 61.2 97 38.1
EL10Ac9g22703 Beta vulgaris HOM05D000372 ORTHO05D000948 1.0e-07 61.2 146 32.2
Lj9A85T82 Lonicera japonica HOM05D000372 ORTHO05D000948 1.3e-07 60.8 129 37.2
Potri.001G057400 Populus trichocarpa HOM05D000372 ORTHO05D000948 1.3e-07 60.8 145 31.7
Potri.003G171000 Populus trichocarpa HOM05D000372 ORTHO05D000948 1.3e-07 60.8 145 31.7
Ah.01g002560 Amaranthus hybridus HOM05D000372 ORTHO05D000948 1.7e-07 60.5 171 28.7
AL7G44620 Arabidopsis lyrata HOM05D000372 ORTHO05D000948 2.9e-07 59.7 105 35.2
Gohir.A12G149200 Gossypium hirsutum HOM05D000372 ORTHO05D000948 2.9e-07 59.7 185 25.9
Lalb_Chr08g0230581 Lupinus albus HOM05D000372 ORTHO05D000948 2.9e-07 59.7 160 31.2
Carub.0001s2585 Capsella rubella HOM05D000372 ORTHO05D000948 3.8e-07 59.3 192 28.6
CAN.G240.1 Capsicum annuum HOM05D000372 ORTHO05D000948 3.8e-07 59.3 136 30.1
EL10Ac6g13521 Beta vulgaris HOM05D000372 ORTHO05D000948 5.0e-07 58.9 142 28.2
Ca_16450_v3 Cicer arietinum L. HOM05D000372 ORTHO05D000948 5.0e-07 58.9 160 30.0
Cc11_g17030 Coffea canephora HOM05D000372 ORTHO05D000948 5.0e-07 58.9 171 28.1
HPP92_011776 Vanilla planifolia HOM05D000372 ORTHO05D000948 5.0e-07 58.9 147 29.9
CSS0025462 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D000948 6.5e-07 58.5 151 26.5
Os10g0362300 Oryza sativa ssp. japonica HOM05D000372 ORTHO05D000948 8.5e-07 58.2 146 33.6
AUR62015027 Chenopodium quinoa HOM05D000372 ORTHO05D000948 1.1e-06 57.8 151 30.5
AUR62029085 Chenopodium quinoa HOM05D000372 ORTHO05D000948 1.1e-06 57.8 151 30.5
BcaB06g26981 Brassica carinata HOM05D000372 ORTHO05D000948 1.4e-06 57.4 76 38.2
ECA234G1263 Erigeron canadensis HOM05D000372 ORTHO05D000948 1.4e-06 57.4 141 33.3
MBI07_g36564_MAGBIO Magnolia biondii HOM05D000372 ORTHO05D000948 1.4e-06 57.4 162 28.4
Solyc05g015610.3 Solanum lycopersicum HOM05D000372 ORTHO05D000948 1.4e-06 57.4 136 28.7
Sopen05g011050 Solanum pennellii HOM05D000372 ORTHO05D000948 1.4e-06 57.4 136 28.7
PGSC0003DMG400034307 Solanum tuberosum HOM05D000372 ORTHO05D000948 1.4e-06 57.4 136 28.7
Aqoxy5G03326 Aquilegia oxysepala HOM05D000372 ORTHO05D000948 1.9e-06 57.0 161 29.8
Dinv11678 Davidia involucrata HOM05D000372 ORTHO05D000948 1.9e-06 57.0 164 28.7
Thhalv10003542m.g Eutrema salsugineum HOM05D000372 ORTHO05D000948 1.9e-06 57.0 98 34.7
AUR62005635 Chenopodium quinoa HOM05D000372 ORTHO05D000948 2.5e-06 56.6 148 28.4
Lsat_1_v5_gn_8_147740 Lactuca sativa HOM05D000372 ORTHO05D000948 2.5e-06 56.6 146 29.5
MBI11_g41398_MAGBIO Magnolia biondii HOM05D000372 ORTHO05D000948 2.5e-06 56.6 138 28.3
Sabra03G0125100 Salix brachista HOM05D000372 ORTHO05D000948 3.2e-06 56.2 145 30.3
SalBow8G1762 Salvia bowleyana HOM05D000372 ORTHO05D000948 3.2e-06 56.2 142 28.2
BcaC02g09497 Brassica carinata HOM05D000372 ORTHO05D000948 4.2e-06 55.8 103 34.0
Carub.0007s3151 Capsella rubella HOM05D000372 ORTHO05D000948 4.2e-06 55.8 100 34.0
Hund25472 Selenicereus undatus HOM05D000372 ORTHO05D000948 4.2e-06 55.8 162 25.9
Thecc.02G205500 Theobroma cacao HOM05D000372 ORTHO05D000948 4.2e-06 55.8 161 27.3
A04p09950 Brassica napus HOM05D000372 ORTHO05D000948 5.5e-06 55.5 55 45.5
BraA04t16657Z Brassica rapa HOM05D000372 ORTHO05D000948 5.5e-06 55.5 55 45.5
Duzib268G0709 Durio zibethinus HOM05D000372 ORTHO05D000948 5.5e-06 55.5 183 25.1
Gohir.D02G147800 Gossypium hirsutum HOM05D000372 ORTHO05D000948 5.5e-06 55.5 169 27.8
Gorai.005G165600 Gossypium raimondii HOM05D000372 ORTHO05D000948 5.5e-06 55.5 169 27.8
Phvul.L002746 Phaseolus vulgaris HOM05D000372 ORTHO05D000948 5.5e-06 55.5 147 29.9
VMungo0251G3253 Vigna mungo HOM05D000372 ORTHO05D000948 5.5e-06 55.5 147 29.9
Cpa.g.sc43.73 Carica papaya HOM05D000372 ORTHO05D000948 7.2e-06 55.1 147 28.6
Manes.13G010500 Manihot esculenta HOM05D000372 ORTHO05D000948 7.2e-06 55.1 162 28.4
Gohir.A03G114500 Gossypium hirsutum HOM05D000372 ORTHO05D000948 9.4e-06 54.7 169 27.8
Manes.12G009800 Manihot esculenta HOM05D000372 ORTHO05D000948 9.4e-06 54.7 158 29.1


User provided reference genes

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