Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 3.5e-81 305.1 174 100.0
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.3e-78 296.6 174 97.7
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 5.3e-77 291.2 174 97.1
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 1.2e-76 290.0 174 96.6
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.4e-74 283.1 174 95.4
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 1.4e-69 266.5 178 87.6
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 1.6e-49 199.9 174 73.6
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 5.7e-47 191.4 174 71.3
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 1.4e-45 186.8 172 70.9
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 7.5e-31 137.9 126 70.6
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 2.8e-30 136.0 184 55.4
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 3.1e-29 132.5 169 54.4
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 7.0e-29 131.3 126 68.3
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.2e-28 130.6 134 64.2
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 2.0e-28 129.8 181 53.6
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 3.5e-28 129.0 177 54.8
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 5.9e-28 128.3 169 54.4
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 5.0e-27 125.2 169 53.8
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 9.5e-26 120.9 169 50.3
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 1.0e-24 117.5 168 50.6
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 3.0e-24 115.9 172 53.5
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 5.2e-24 115.2 134 60.4
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 5.2e-24 115.2 171 54.4
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 1.5e-23 113.6 156 51.9
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 3.4e-23 112.5 176 52.3
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 5.7e-23 111.7 182 50.5
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 5.7e-23 111.7 169 52.7
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 7.5e-23 111.3 173 52.6
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 1.3e-22 110.5 174 50.6
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 1.3e-22 110.5 170 48.2
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.7e-22 110.2 134 56.7
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 2.2e-22 109.8 178 51.7
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 2.2e-22 109.8 184 47.8
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.8e-22 109.4 111 68.5
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 2.8e-22 109.4 130 60.0
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 2.8e-22 109.4 109 64.2
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 3.7e-22 109.0 174 49.4
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 3.7e-22 109.0 136 55.1
FvH4_3g42261 Fragaria vesca HOM05D019050 ORTHO05D035443 3.7e-22 109.0 199 50.3
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 6.3e-22 108.2 175 49.1
FAN16G1216 Fragaria x ananassa HOM05D019050 ORTHO05D035374 6.3e-22 108.2 199 50.3
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 8.3e-22 107.8 126 61.9
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 1.1e-21 107.5 103 70.9
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 2.4e-21 106.3 174 46.0
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 3.1e-21 105.9 113 61.1
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 3.1e-21 105.9 113 61.1
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 3.1e-21 105.9 113 61.1
FAN11G3625 Fragaria x ananassa HOM05D019050 ORTHO05D035443 3.1e-21 105.9 162 54.3
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 3.1e-21 105.9 125 58.4
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 4.1e-21 105.5 110 62.7
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 4.1e-21 105.5 110 59.1
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 9.2e-21 104.4 173 49.7
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 2.0e-20 103.2 94 68.1
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 3.5e-20 102.4 184 50.5
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.0e-19 100.9 134 53.0
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 1.0e-19 100.9 169 47.9
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 1.3e-19 100.5 135 53.3
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 1.3e-19 100.5 132 54.5
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.7e-19 100.1 103 64.1
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 2.3e-19 99.8 103 64.1
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.3e-19 99.8 103 62.1
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 2.3e-19 99.8 98 65.3
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 2.9e-19 99.4 101 63.4
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 2.9e-19 99.4 102 63.7
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 6.6e-19 98.2 135 52.6
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 1.9e-18 96.7 103 62.1
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 1.9e-18 96.7 143 55.2
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.9e-18 96.7 170 49.4
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 3.3e-18 95.9 169 47.3
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 3.3e-18 95.9 132 51.5
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 5.6e-18 95.1 127 53.5
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 5.6e-18 95.1 99 65.7
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 5.6e-18 95.1 132 53.8
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 5.6e-18 95.1 184 47.8
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 7.3e-18 94.7 108 64.8
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 9.5e-18 94.4 140 43.6
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 1.6e-17 93.6 129 55.8
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.6e-17 93.6 170 48.2
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 1.6e-17 93.6 128 53.9
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.1e-17 93.2 134 51.5
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 2.1e-17 93.2 102 63.7
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 2.8e-17 92.8 170 45.9
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 2.8e-17 92.8 100 64.0
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 4.7e-17 92.0 97 67.0
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 4.7e-17 92.0 135 51.1
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 8.0e-17 91.3 179 48.6
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 1.0e-16 90.9 107 60.7
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 1.4e-16 90.5 107 57.0
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.4e-16 90.5 165 47.3
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 1.4e-16 90.5 143 49.7
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 1.8e-16 90.1 118 55.1
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 1.8e-16 90.1 118 55.1
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 2.3e-16 89.7 166 45.8
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 3.0e-16 89.4 170 46.5
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 8.9e-16 87.8 86 68.6
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 8.9e-16 87.8 86 68.6
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 8.9e-16 87.8 119 56.3
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 1.5e-15 87.0 121 59.5
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 2.0e-15 86.7 118 56.8
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.0e-15 86.7 149 46.3
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 2.6e-15 86.3 124 52.4
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 3.4e-15 85.9 168 47.0
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 3.4e-15 85.9 125 55.2
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 4.4e-15 85.5 96 62.5
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 4.4e-15 85.5 173 44.5
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 5.8e-15 85.1 170 45.3
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 5.8e-15 85.1 180 46.7
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 1.3e-14 84.0 103 61.2
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 1.7e-14 83.6 172 45.9
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 1.7e-14 83.6 87 62.1
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 1.7e-14 83.6 87 62.1
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 1.7e-14 83.6 86 65.1
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 2.2e-14 83.2 114 54.4
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 2.2e-14 83.2 173 46.2
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 2.9e-14 82.8 179 45.8
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 2.9e-14 82.8 96 59.4
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 2.9e-14 82.8 172 45.9
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 2.9e-14 82.8 97 61.9
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 2.9e-14 82.8 167 46.1
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 3.7e-14 82.4 104 56.7
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 3.7e-14 82.4 180 45.0
Potri.001G371500 Populus trichocarpa HOM05D004577 ORTHO05D005062 4.9e-14 82.0 176 43.2
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 6.4e-14 81.6 99 62.6
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 8.3e-14 81.3 172 45.3
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 8.3e-14 81.3 101 57.4
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 8.3e-14 81.3 163 44.2
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 1.1e-13 80.9 99 58.6
FAN21G1050 Fragaria x ananassa HOM05D019050 ORTHO05D204215 1.1e-13 80.9 200 46.0
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 1.4e-13 80.5 130 50.8
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.4e-13 80.5 109 57.8
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.4e-13 80.5 105 56.2
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 4.1e-13 79.0 110 55.5
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 4.1e-13 79.0 170 42.9
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 5.4e-13 78.6 172 43.0
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 5.4e-13 78.6 172 44.2
FAN25G0864 Fragaria x ananassa HOM05D019050 ORTHO05D035443 5.4e-13 78.6 161 46.0
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 4.6e-12 75.5 98 57.1
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 7.8e-12 74.7 86 64.0
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 7.8e-12 74.7 100 59.0
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 7.8e-12 74.7 151 43.7
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 1.3e-11 73.9 92 55.4
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 1.7e-11 73.6 98 56.1
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.7e-11 73.6 97 59.8
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 3.9e-11 72.4 100 56.0
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 5.0e-11 72.0 85 54.1
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 5.0e-11 72.0 67 71.6
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 4.3e-10 68.9 71 66.2
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 1.6e-09 67.0 96 49.0
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 2.8e-09 66.2 67 67.2
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.6e-09 65.9 67 59.7
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 6.2e-09 65.1 67 65.7
Rhsim06G0184100 Rhododendron simsii HOM05D041616 ORTHO05D005062 4.4e-07 58.9 98 54.1
vmacro12024 Vaccinium macrocarpon HOM05D041616 ORTHO05D005062 4.4e-07 58.9 162 41.4
Ca_04555_v3 Cicer arietinum L. HOM05D011393 ORTHO05D013493 5.8e-07 58.5 171 35.7
Duzib268G0228 Durio zibethinus HOM05D004577 ORTHO05D005062 5.8e-07 58.5 105 43.8


User provided reference genes

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