Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 4.6e-225 784.3 401 100.0
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.2e-220 769.6 401 98.0
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 2.3e-184 649.0 401 86.3
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 3.9e-168 595.1 342 89.8
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 3.3e-167 592.0 342 89.5
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 2.1e-161 572.8 342 86.8
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 2.0e-151 539.7 357 78.4
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 6.1e-145 518.1 374 72.7
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 3.0e-144 515.8 307 86.3
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 1.7e-142 510.0 342 78.4
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 3.5e-140 502.3 336 78.0
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 2.9e-139 499.2 398 67.6
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 8.6e-139 497.7 307 82.7
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 6.1e-137 491.5 311 81.4
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 1.0e-136 490.7 359 72.4
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 1.0e-136 490.7 347 72.9
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 1.2e-135 487.3 347 74.6
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 1.2e-135 487.3 350 73.7
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 1.5e-135 486.9 349 73.9
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.2e-134 483.0 341 73.3
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.2e-134 483.0 305 79.3
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 1.4e-133 480.3 313 79.9
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 1.4e-133 480.3 342 71.9
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 2.4e-133 479.6 341 73.0
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 3.2e-133 479.2 338 73.7
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 7.8e-132 474.6 347 71.8
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 3.9e-131 472.2 336 73.2
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 6.6e-131 471.5 347 72.9
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 2.5e-130 469.5 344 72.4
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 3.3e-130 469.2 307 77.5
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 3.3e-130 469.2 347 70.6
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 4.3e-130 468.8 342 71.1
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 4.3e-130 468.8 341 72.4
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 1.6e-129 466.8 343 71.7
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 6.2e-129 464.9 299 77.3
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 6.2e-129 464.9 342 70.5
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 8.0e-129 464.5 338 72.2
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 1.0e-128 464.2 347 70.0
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 1.4e-128 463.8 347 71.2
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 2.3e-128 463.0 336 71.4
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 3.1e-128 462.6 334 71.0
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 6.8e-128 461.5 299 77.3
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 6.8e-128 461.5 344 70.1
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 1.5e-127 460.3 307 76.5
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 3.4e-127 459.1 347 68.3
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 4.4e-127 458.8 346 69.4
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 5.8e-127 458.4 338 71.3
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 7.5e-127 458.0 299 76.6
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 9.8e-127 457.6 339 71.1
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 1.3e-126 457.2 347 70.6
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.3e-126 457.2 347 70.3
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.3e-126 457.2 347 70.3
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 2.2e-126 456.4 343 70.3
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 3.7e-126 455.7 347 70.0
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 4.9e-126 455.3 350 67.7
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 8.3e-126 454.5 349 70.5
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 8.3e-126 454.5 339 71.4
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 2.4e-125 453.0 339 69.6
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 2.4e-125 453.0 353 69.4
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 2.4e-125 453.0 378 65.9
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 5.4e-125 451.8 339 69.6
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 5.4e-125 451.8 339 69.6
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 5.4e-125 451.8 339 69.6
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 7.0e-125 451.4 339 69.6
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 7.0e-125 451.4 345 70.7
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 2.7e-124 449.5 339 69.3
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 7.8e-124 448.0 339 71.1
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 7.8e-124 448.0 339 69.0
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 7.8e-124 448.0 341 70.4
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 7.8e-124 448.0 341 70.1
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 1.0e-123 447.6 370 65.7
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 3.0e-123 446.0 339 71.1
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 3.9e-123 445.7 341 68.9
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 3.9e-123 445.7 334 69.2
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 3.9e-123 445.7 309 74.4
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 1.1e-122 444.1 334 69.2
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.9e-122 443.4 348 68.1
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 4.3e-122 442.2 342 67.5
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 9.5e-122 441.0 306 73.5
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 9.5e-122 441.0 303 74.3
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 1.6e-121 440.3 307 73.3
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 2.1e-121 439.9 339 69.3
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 4.7e-121 438.7 295 76.6
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 8.1e-121 438.0 307 73.6
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 1.8e-120 436.8 344 67.7
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 4.0e-120 435.6 341 67.4
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 3.4e-119 432.6 335 66.9
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 3.4e-119 432.6 339 67.6
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 3.7e-118 429.1 341 67.2
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 6.4e-118 428.3 301 72.8
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 1.4e-117 427.2 343 66.5
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 7.1e-117 424.9 340 65.6
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 6.0e-116 421.8 343 65.6
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 1.1e-114 417.5 287 75.3
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 3.6e-113 412.5 312 69.6
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 2.3e-112 409.8 341 66.3
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 8.9e-112 407.9 341 65.4
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 2.0e-111 406.8 347 62.2
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 2.6e-111 406.4 297 68.7
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 3.8e-110 402.5 303 68.0
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 4.9e-110 402.1 303 67.0
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 1.9e-109 400.2 275 71.6
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 3.2e-109 399.4 307 70.7
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 7.1e-109 398.3 387 58.4
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 7.8e-108 394.8 251 81.7
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 3.9e-107 392.5 323 66.3
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 5.6e-106 388.7 293 68.9
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 5.6e-106 388.7 374 58.3
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 2.1e-105 386.7 395 57.2
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 3.1e-104 382.9 356 62.1
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 2.0e-103 380.2 254 75.6
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 2.0e-103 380.2 271 70.5
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 1.7e-102 377.1 298 65.4
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 3.8e-102 375.9 250 76.4
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 6.4e-102 375.2 384 56.5
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 1.1e-101 374.4 339 62.5
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 2.4e-101 373.2 357 59.1
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 6.0e-100 368.6 272 70.6
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 1.4e-93 347.4 236 78.8
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 4.6e-92 342.4 247 70.4
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 8.7e-91 338.2 347 55.3
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 1.9e-90 337.0 328 57.0
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 9.6e-90 334.7 301 55.8
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 1.6e-89 334.0 247 68.8
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 1.1e-88 331.3 301 55.1
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 1.7e-86 323.9 298 56.0
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 2.2e-86 323.6 370 50.8
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 1.9e-85 320.5 354 49.4
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.3e-83 314.3 235 71.9
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 2.0e-79 300.4 190 80.5
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 1.0e-75 288.1 195 72.8
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 9.0e-72 275.0 228 57.0
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 1.3e-65 254.6 292 44.9
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 2.5e-61 240.4 191 67.5
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 2.3e-59 233.8 183 67.2
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 6.3e-57 225.7 155 74.2
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 4.4e-50 203.0 172 64.0
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 3.0e-35 153.7 315 39.0
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 9.5e-29 132.1 125 59.2
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 4.4e-18 96.7 95 57.9
HanXRQChr07g0192801 Helianthus annuus HOM05D004887 ORTHO05D225384 5.8e-10 69.7 55 61.8
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 5.4e-08 63.2 35 82.9
HanXRQChr05g0134321 Helianthus annuus HOM05D004887 ORTHO05D025733 2.0e-07 61.2 46 63.0
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 1.0e-06 58.9 91 44.0
Lj1A771T12 Lonicera japonica HOM05D024127 ORTHO05D025733 3.0e-06 57.4 36 72.2


User provided reference genes

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