Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G2462 Fragaria x ananassa HOM05D005189 ORTHO05D006093 1.0e-171 606.7 319 100.0
FAN21G1757 Fragaria x ananassa HOM05D005189 ORTHO05D006093 2.7e-151 538.9 306 94.8
FvH4_3g14570 Fragaria vesca HOM05D005189 ORTHO05D006093 3.4e-146 521.9 305 92.1
RcHm_v2.0_Chr5g0024021 Rosa chinensis HOM05D005189 ORTHO05D006093 1.6e-140 503.1 303 89.4
FAN16G0469 Fragaria x ananassa HOM05D005189 ORTHO05D006093 6.8e-139 497.7 250 94.4
MD10G1211200 Malus domestica HOM05D005189 ORTHO05D006093 6.2e-116 421.4 304 76.6
MD05G1235200 Malus domestica HOM05D005189 ORTHO05D006093 1.1e-115 420.6 304 76.3
FAN11G2688 Fragaria x ananassa HOM05D005189 ORTHO05D006093 1.4e-115 420.2 341 74.5
Prupe.4G131100 Prunus persica HOM05D005189 ORTHO05D006093 2.4e-115 419.5 307 76.5
Ciclev10020359m.g Citrus clementina HOM05D005189 ORTHO05D006093 1.0e-86 324.3 305 61.6
QL06p006883 Quercus lobata HOM05D005189 ORTHO05D006093 3.9e-86 322.4 303 63.7
Cfa010639 Carpinus fangiana HOM05D005189 ORTHO05D006093 6.7e-86 321.6 302 61.3
Gohir.A11G162200 Gossypium hirsutum HOM05D005189 ORTHO05D006093 1.9e-85 320.1 301 61.1
Potri.002G201200 Populus trichocarpa HOM05D005189 ORTHO05D006093 2.5e-85 319.7 300 61.0
ClCG03G014110 Citrullus lanatus HOM05D005189 ORTHO05D006093 1.4e-83 313.9 298 61.1
Gohir.D11G168500 Gossypium hirsutum HOM05D005189 ORTHO05D006093 1.8e-83 313.5 301 60.8
Gorai.007G180000 Gossypium raimondii HOM05D005189 ORTHO05D006093 1.8e-83 313.5 301 60.5
Thecc.05G192400 Theobroma cacao HOM05D005189 ORTHO05D006093 1.8e-83 313.5 301 61.1
CsaV3_1G042140 Cucumis sativus L. HOM05D005189 ORTHO05D006093 6.9e-83 311.6 298 55.7
arahy.Tifrunner.gnm1.ann1.4RF6J7 Arachis hypogaea HOM05D005189 ORTHO05D006093 1.2e-82 310.8 298 55.4
arahy.Tifrunner.gnm1.ann1.U1QXXC Arachis hypogaea HOM05D005189 ORTHO05D006093 1.2e-82 310.8 253 58.5
arahy.Tifrunner.gnm1.ann1.3WZ8U6 Arachis hypogaea HOM05D005189 ORTHO05D006093 2.0e-82 310.1 253 58.5
arahy.Tifrunner.gnm1.ann1.ZR0QLK Arachis hypogaea HOM05D005189 ORTHO05D006093 3.4e-82 309.3 298 55.0
Atru.chr5.1082 Acer truncatum HOM05D005189 ORTHO05D006093 4.5e-82 308.9 310 58.7
MELO3C015632.2 Cucumis melo HOM05D005189 ORTHO05D006093 1.0e-81 307.8 298 53.7
TWI23G0603 Tripterygium wilfordii HOM05D005189 ORTHO05D006093 1.3e-81 307.4 305 60.0
TAR365G0047 Trochodendron aralioides HOM05D005189 ORTHO05D006093 2.2e-81 306.6 310 58.4
Duzib128G0399 Durio zibethinus HOM05D005189 ORTHO05D006093 5.0e-81 305.4 291 61.9
Sabra02G0157700 Salix brachista HOM05D005189 ORTHO05D006093 1.9e-80 303.5 319 50.2
Dinv33081 Davidia involucrata HOM05D005189 ORTHO05D006093 1.2e-79 300.8 303 58.1
PGR047G0002 Punica granatum HOM05D005189 ORTHO05D006093 3.0e-78 296.2 309 57.0
Cpa.g.sc151.36 Carica papaya HOM05D005189 ORTHO05D006093 3.9e-78 295.8 306 58.8
PGR044G0984 Punica granatum HOM05D005189 ORTHO05D006093 3.9e-78 295.8 310 56.8
Sed0013075 Sechium edule HOM05D005189 ORTHO05D006093 6.7e-78 295.0 299 52.5
Lalb_Chr01g0008881 Lupinus albus HOM05D005189 ORTHO05D006093 8.8e-78 294.7 254 57.9
CiPaw.01G112900 Carya illinoinensis HOM05D005189 ORTHO05D006093 2.0e-77 293.5 236 59.7
Manes.03G058600 Manihot esculenta HOM05D005189 ORTHO05D006093 3.3e-77 292.7 310 58.1
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 4.3e-77 292.4 299 54.5
Glyma.12G070400 Glycine max HOM05D005189 ORTHO05D006093 4.3e-77 292.4 255 56.5
Glyma.09G081700 Glycine max HOM05D005189 ORTHO05D006093 5.7e-77 292.0 254 55.5
Carub.0006s3494 Capsella rubella HOM05D005189 ORTHO05D006093 7.4e-77 291.6 303 51.5
CSS0031632 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 2.2e-76 290.0 253 58.1
THA.LOC104801289 Tarenaya hassleriana HOM05D005189 ORTHO05D006093 4.8e-76 288.9 309 56.3
Aqoxy2G02861 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 6.3e-76 288.5 253 59.3
Dinv10045 Davidia involucrata HOM05D003197 ORTHO05D006093 6.3e-76 288.5 234 60.3
Manes.05G000401 Manihot esculenta HOM05D005189 ORTHO05D006093 1.8e-75 287.0 310 57.4
Eucgr.D00103 Eucalyptus grandis HOM05D005189 ORTHO05D006093 4.1e-75 285.8 308 57.1
CSS0046497 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 2.0e-74 283.5 253 57.7
MBI19_g05150_MAGBIO Magnolia biondii HOM05D005189 ORTHO05D006093 3.4e-74 282.7 254 56.3
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 1.0e-73 281.2 254 55.5
EL10Ac2g03409 Beta vulgaris HOM05D005189 ORTHO05D006093 1.3e-73 280.8 253 56.5
CARHR250440 Cardamine hirsuta HOM05D005189 ORTHO05D006093 1.3e-73 280.8 296 53.4
Actinidia25825 Actinidia chinensis HOM05D005189 ORTHO05D006093 2.9e-73 279.6 254 55.9
PGSC0003DMG400014794 Solanum tuberosum HOM05D005189 ORTHO05D006093 2.9e-73 279.6 257 54.9
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 3.8e-73 279.3 296 56.4
Thhalv10028689m.g Eutrema salsugineum HOM05D005189 ORTHO05D006093 6.5e-73 278.5 300 51.0
Phvul.011G074000 Phaseolus vulgaris HOM05D005189 ORTHO05D006093 1.1e-72 277.7 254 54.7
Ca_09036_v3 Cicer arietinum L. HOM05D006431 ORTHO05D007918 2.5e-72 276.6 256 53.5
Oeu008336.1 Olea europaea HOM05D005189 ORTHO05D006093 2.5e-72 276.6 293 52.2
GSVIVG01028059001 Vitis vinifera HOM05D005189 ORTHO05D006093 4.2e-72 275.8 307 48.5
Nitab4.5_0000809g0080 Nicotiana tabacum HOM05D005189 ORTHO05D006093 9.4e-72 274.6 256 53.5
Sopen08g025020 Solanum pennellii HOM05D005189 ORTHO05D006093 1.6e-71 273.9 252 55.6
AUR62024701 Chenopodium quinoa HOM05D005189 ORTHO05D006093 2.1e-71 273.5 250 56.8
Lj6g0027180 Lotus japonicus HOM05D005189 ORTHO05D006093 3.6e-71 272.7 254 54.3
Sp6g02120 Schrenkiella parvula HOM05D005189 ORTHO05D006093 3.6e-71 272.7 300 52.0
TPR.G23365 Trifolium pratense HOM05D005189 ORTHO05D006093 1.0e-70 271.2 255 53.7
DCAR_005781 Daucus carota HOM05D005189 ORTHO05D006093 1.4e-70 270.8 254 53.1
AUR62011856 Chenopodium quinoa HOM05D005189 ORTHO05D006093 2.3e-70 270.0 250 56.0
Lj1g0024820 Lotus japonicus HOM05D005189 ORTHO05D006093 2.3e-70 270.0 251 53.8
Sc05g0003490 Simmondsia chinensis HOM05D005189 ORTHO05D006093 2.3e-70 270.0 294 49.0
BcaC04g24048 Brassica carinata HOM05D005189 ORTHO05D006093 3.9e-70 269.2 296 52.4
DCAR_006919 Daucus carota HOM05D005189 ORTHO05D006093 3.9e-70 269.2 254 52.4
BolC9t53111H Brassica oleracea HOM05D005189 ORTHO05D006093 5.1e-70 268.9 300 52.7
Medtr7g105630 Medicago truncatula HOM05D005189 ORTHO05D006093 6.7e-70 268.5 253 53.0
BraA09t35824Z Brassica rapa HOM05D005189 ORTHO05D006093 8.8e-70 268.1 297 52.5
Psat3g030640 Pisum sativum HOM05D005189 ORTHO05D006093 1.1e-69 267.7 255 52.9
A09p01690 Brassica napus HOM05D005189 ORTHO05D006093 2.0e-69 266.9 297 52.2
CDE02G1252 Ceratophyllum demersum HOM05D005189 ORTHO05D006093 4.4e-69 265.8 253 55.7
Aa31LG5G1890 Aethionema arabicum HOM05D005189 ORTHO05D006093 1.3e-68 264.2 295 49.2
C09p01760 Brassica napus HOM05D005189 ORTHO05D006093 1.3e-68 264.2 299 56.5
Migut.D00121 Erythranthe guttata HOM05D005189 ORTHO05D006093 1.3e-68 264.2 248 54.8
arahy.Tifrunner.gnm1.ann1.5FY99X Arachis hypogaea HOM05D005189 ORTHO05D006093 1.7e-68 263.8 199 63.3
CAN.G1987.2 Capsicum annuum HOM05D005189 ORTHO05D006093 3.7e-68 262.7 298 50.3
arahy.Tifrunner.gnm1.ann1.ALS4S9 Arachis hypogaea HOM05D005189 ORTHO05D006093 1.8e-67 260.4 244 58.2
MSTRG.13027 Avicennia marina HOM05D005189 ORTHO05D006093 7.0e-67 258.5 296 55.1
BcaB01g02068 Brassica carinata HOM05D005189 ORTHO05D006093 1.6e-66 257.3 296 50.7
PSO765G0055 Papaver somniferum HOM05D005189 ORTHO05D006093 1.6e-66 257.3 255 52.2
Os03g0300200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 2.0e-66 256.9 304 51.0
HPP92_013737 Vanilla planifolia HOM05D005189 ORTHO05D006093 4.5e-66 255.8 256 52.3
ATR0665G541 Amborella trichopoda HOM05D005189 ORTHO05D006093 1.0e-65 254.6 256 52.0
Nn8g40249 Nelumbo nucifera HOM05D005189 ORTHO05D006093 2.2e-65 253.4 225 57.3
PSO782G1813 Papaver somniferum HOM05D005189 ORTHO05D006093 1.1e-64 251.1 255 51.8
ECA236G2822 Erigeron canadensis HOM05D000141 ORTHO05D000780 1.5e-64 250.8 244 50.8
Peaxi162Scf00170g00624 Petunia axillaris HOM05D005189 ORTHO05D006093 2.5e-64 250.0 226 54.9
SalBow6G1077 Salvia bowleyana HOM05D005189 ORTHO05D006093 7.2e-64 248.4 286 48.3
Cc01_g21150 Coffea canephora HOM05D005189 ORTHO05D006093 3.6e-63 246.1 252 52.0
Zm00001eb013970 Zea mays HOM05D005189 ORTHO05D006093 3.6e-63 246.1 254 50.0
Solyc08g076440.4 Solanum lycopersicum HOM05D005189 ORTHO05D006093 6.1e-63 245.4 211 59.2
Zm00001eb396540 Zea mays HOM05D005189 ORTHO05D006093 8.8e-62 241.5 307 45.9
Eucgr.D00338 Eucalyptus grandis HOM05D005189 ORTHO05D006093 3.3e-61 239.6 253 51.4
Nitab4.5_0000529g0190 Nicotiana tabacum HOM05D005189 ORTHO05D006093 8.2e-60 235.0 240 50.8
unitig_22.g5230 Utricularia gibba HOM05D005189 ORTHO05D006093 1.0e-57 228.0 253 48.2
HanXRQChr04g0114701 Helianthus annuus HOM05D005189 ORTHO05D006093 3.2e-56 223.0 248 48.0
Lsat_1_v5_gn_8_164980 Lactuca sativa HOM05D005189 ORTHO05D006093 3.2e-56 223.0 235 48.9
EL10Ac9g21129 Beta vulgaris HOM05D005189 ORTHO05D006093 1.2e-55 221.1 265 46.8
Rhsim13G0007900 Rhododendron simsii HOM05D005189 ORTHO05D006093 4.7e-55 219.2 313 49.2
SGA_v2.0_scaffold334G49031 Striga asiatica HOM05D000141 ORTHO05D000780 8.0e-55 218.4 243 46.9
HanXRQChr04g0111211 Helianthus annuus HOM05D005189 ORTHO05D006093 2.8e-52 209.9 222 50.5
Haze_03588 Corylus avellana HOM05D005189 ORTHO05D006093 2.4e-51 206.8 181 69.1
Mapoly0037s0138 Marchantia polymorpha HOM05D005189 ORTHO05D006093 5.9e-50 202.2 256 43.8
TPR.G32201 Trifolium pratense HOM05D005189 ORTHO05D006093 1.0e-49 201.4 193 53.4
Lj1A21G66 Lonicera japonica HOM05D005189 ORTHO05D006093 2.2e-49 200.3 323 40.6
AagrBONN_evm.TU.Sc2ySwM_117.3848 Anthoceros agrestis HOM05D005189 ORTHO05D006093 4.7e-47 192.6 181 51.9
SEGI_10631 Sequoiadendron giganteum HOM05D005189 ORTHO05D006093 2.6e-45 186.8 235 43.0
Pp3c25_650 Physcomitrium patens HOM05D005189 ORTHO05D006093 7.5e-45 185.3 228 42.5
Pp3c22_7380 Physcomitrium patens HOM05D005189 ORTHO05D006093 2.2e-44 183.7 262 37.0
Oeu021746.1 Olea europaea HOM05D005189 ORTHO05D006093 8.3e-44 181.8 291 39.2
SMO118G0558 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 1.4e-43 181.0 237 43.9
DCAR_008439 Daucus carota HOM05D005189 ORTHO05D006093 1.5e-40 171.0 208 45.2
DCAR_022674 Daucus carota HOM05D005189 ORTHO05D006093 7.5e-37 158.7 210 43.3
CBR_g22284 Chara braunii HOM05D005189 ORTHO05D006093 8.3e-36 155.2 263 35.4
Rhsim01G0287800 Rhododendron simsii HOM05D005189 ORTHO05D006093 8.3e-36 155.2 154 53.9
Lj5C676G0 Lonicera japonica HOM05D005189 ORTHO05D006093 8.6e-33 145.2 249 38.2
Actinidia21022 Actinidia chinensis HOM05D005189 ORTHO05D006093 1.9e-32 144.1 159 48.4
CAN.G726.22 Capsicum annuum HOM05D005189 ORTHO05D006093 1.2e-31 141.4 114 57.9
Zm00001eb265340 Zea mays HOM05D005189 ORTHO05D006093 2.4e-27 127.1 113 53.1
HanXRQChr04g0111201 Helianthus annuus HOM05D005189 ORTHO05D006093 1.2e-23 114.8 88 59.1
Zm00001eb312720 Zea mays HOM05D005189 ORTHO05D006093 5.2e-22 109.4 81 59.3
Cre03.g149500 Chlamydomonas reinhardtii HOM05D005189 ORTHO05D006093 2.3e-17 94.0 127 43.3
MCO15G205 Micromonas commoda HOM05D005189 ORTHO05D006093 1.5e-16 91.3 117 42.7
Prupe.1G192100 Prunus persica HOM05D005189 ORTHO05D006093 4.3e-16 89.7 56 75.0
SMO143G0318 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 2.8e-15 87.0 98 49.0
Zm00001eb129840 Zea mays HOM05D001670 ORTHO05D006093 2.3e-14 84.0 119 37.8
Zm00001eb306860 Zea mays HOM05D001670 ORTHO05D006093 8.4e-12 75.5 111 35.1
COL.COLO4_33288 Corchorus olitorius HOM05D005189 ORTHO05D006093 2.7e-10 70.5 89 40.4
Zm00001eb068830 Zea mays HOM05D005189 ORTHO05D006093 7.3e-08 62.4 39 61.5
Aqoxy22s003 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 3.6e-07 60.1 39 71.8
arahy.Tifrunner.gnm1.ann1.V7ULXX Arachis hypogaea HOM05D005189 ORTHO05D006093 3.1e-06 57.0 40 57.5


User provided reference genes

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