Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G2365 Fragaria x ananassa HOM05D007132 ORTHO05D009120 2.0e-211 738.8 355 100.0
FAN11G4000 Fragaria x ananassa HOM05D007132 ORTHO05D009120 4.8e-202 707.6 355 95.8
FvH4_3g16420 Fragaria vesca HOM05D007132 ORTHO05D009120 2.4e-193 678.7 355 93.2
RcHm_v2.0_Chr5g0027441 Rosa chinensis HOM05D007132 ORTHO05D009120 5.4e-185 651.0 359 89.7
MD05G1209900 Malus domestica HOM05D007132 ORTHO05D009120 1.6e-149 533.1 347 73.5
Cfa012869 Carpinus fangiana HOM05D007132 ORTHO05D009120 6.9e-140 501.1 352 69.0
CANSAT11G0857 Cannabis sativa HOM05D007132 ORTHO05D009120 7.1e-137 491.1 352 67.0
CiPaw.11G075400 Carya illinoinensis HOM05D007132 ORTHO05D009120 1.2e-136 490.3 344 68.0
vmacro00083 Vaccinium macrocarpon HOM05D007132 ORTHO05D009120 5.1e-135 485.0 339 69.0
Gorai.006G123100 Gossypium raimondii HOM05D007132 ORTHO05D009120 1.1e-134 483.8 348 68.7
Gohir.D09G105701 Gossypium hirsutum HOM05D007132 ORTHO05D009120 1.5e-134 483.4 343 69.4
Psat2g145880 Pisum sativum HOM05D007132 ORTHO05D009120 1.9e-134 483.0 347 67.4
Gohir.A09G109100 Gossypium hirsutum HOM05D007132 ORTHO05D009120 3.3e-134 482.3 343 69.1
Atru.chr8.2638 Acer truncatum HOM05D007132 ORTHO05D009120 4.8e-133 478.4 347 67.4
Lj2g0003748 Lotus japonicus HOM05D007132 ORTHO05D009120 2.6e-131 472.6 351 65.2
arahy.Tifrunner.gnm1.ann1.63YFX7 Arachis hypogaea HOM05D007132 ORTHO05D009120 9.9e-131 470.7 354 66.1
arahy.Tifrunner.gnm1.ann1.WE0KUF Arachis hypogaea HOM05D007132 ORTHO05D009120 9.9e-131 470.7 354 66.1
Glyma.11G089600 Glycine max HOM05D007132 ORTHO05D009120 3.8e-130 468.8 350 64.3
PGR042G0795 Punica granatum HOM05D007132 ORTHO05D009120 3.8e-130 468.8 343 66.2
VMungo1215G2638 Vigna mungo HOM05D007132 ORTHO05D009120 4.9e-130 468.4 348 65.5
Nn1g09371 Nelumbo nucifera HOM05D007132 ORTHO05D009120 1.4e-129 466.8 359 63.0
TWI75G0244 Tripterygium wilfordii HOM05D007132 ORTHO05D009120 1.2e-128 463.8 348 63.5
Manes.S095221 Manihot esculenta HOM05D007132 ORTHO05D009120 1.6e-128 463.4 338 66.9
Duzib168G0014 Durio zibethinus HOM05D007132 ORTHO05D009120 3.5e-128 462.2 340 66.8
QL12p004376 Quercus lobata HOM05D007132 ORTHO05D009120 6.0e-128 461.5 400 58.2
Thecc.09G252800 Theobroma cacao HOM05D007132 ORTHO05D009120 6.0e-128 461.5 352 65.1
TPR.G5247 Trifolium pratense HOM05D007132 ORTHO05D009120 7.9e-128 461.1 347 64.6
Medtr5g025190 Medicago truncatula HOM05D007132 ORTHO05D009120 1.0e-127 460.7 346 63.9
PGSC0003DMG400001970 Solanum tuberosum HOM05D007132 ORTHO05D009120 1.0e-127 460.7 325 65.8
CDE02G3577 Ceratophyllum demersum HOM05D007132 ORTHO05D009120 5.1e-127 458.4 349 61.6
DCAR_028364 Daucus carota HOM05D007132 ORTHO05D009120 6.7e-127 458.0 342 63.7
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 8.7e-127 457.6 352 62.8
AUR62009339 Chenopodium quinoa HOM05D007132 ORTHO05D009120 8.7e-127 457.6 325 66.8
Eucgr.E01138 Eucalyptus grandis HOM05D007132 ORTHO05D009120 1.5e-126 456.8 349 63.6
Lsat_1_v5_gn_6_15181 Lactuca sativa HOM05D007132 ORTHO05D009120 2.5e-126 456.1 334 66.2
Oeu046789.1 Olea europaea HOM05D007132 ORTHO05D009120 3.3e-126 455.7 326 65.3
Sopen08g024160 Solanum pennellii HOM05D007132 ORTHO05D009120 3.3e-126 455.7 325 65.5
Actinidia32785 Actinidia chinensis HOM05D007132 ORTHO05D009120 7.4e-126 454.5 342 64.9
Nitab4.5_0004157g0010 Nicotiana tabacum HOM05D007132 ORTHO05D009120 7.4e-126 454.5 326 65.6
COL.COLO4_33243 Corchorus olitorius HOM05D007132 ORTHO05D009120 2.1e-125 453.0 353 63.5
PSO541G5430 Papaver somniferum HOM05D007132 ORTHO05D009120 2.1e-125 453.0 358 62.0
EL10Ac2g04081 Beta vulgaris HOM05D007132 ORTHO05D009120 3.7e-125 452.2 325 65.5
Ciclev10031829m.g Citrus clementina HOM05D007132 ORTHO05D009120 1.1e-124 450.7 349 64.2
Potri.001G233200 Populus trichocarpa HOM05D007132 ORTHO05D009120 2.4e-124 449.5 328 67.4
Sabra09G0016800 Salix brachista HOM05D007132 ORTHO05D009120 4.0e-124 448.7 357 63.3
Solyc08g075510.4 Solanum lycopersicum HOM05D007132 ORTHO05D009120 6.9e-124 448.0 355 60.6
Lj8C1T2 Lonicera japonica HOM05D007132 ORTHO05D009120 2.6e-123 446.0 393 56.2
Nitab4.5_0000030g0380 Nicotiana tabacum HOM05D007132 ORTHO05D009120 2.6e-123 446.0 326 64.4
CAN.G1026.1 Capsicum annuum HOM05D007132 ORTHO05D009120 7.6e-123 444.5 324 64.5
Lj8A344T21 Lonicera japonica HOM05D007132 ORTHO05D009120 7.6e-123 444.5 421 53.9
Potri.009G025400 Populus trichocarpa HOM05D007132 ORTHO05D009120 1.7e-122 443.4 356 62.4
SalBow8G0736 Salvia bowleyana HOM05D007132 ORTHO05D009120 4.9e-122 441.8 324 62.3
Aqoxy3G02733 Aquilegia oxysepala HOM05D007132 ORTHO05D009120 1.9e-121 439.9 354 60.2
BolC3t19289H Brassica oleracea HOM05D007132 ORTHO05D009120 2.5e-121 439.5 354 60.5
HanXRQChr12g0382251 Helianthus annuus HOM05D007132 ORTHO05D009120 7.1e-121 438.0 356 59.0
MBI04_g06282_MAGBIO Magnolia biondii HOM05D007132 ORTHO05D009120 1.6e-120 436.8 328 64.6
Cc08_g05480 Coffea canephora HOM05D007132 ORTHO05D009120 2.1e-120 436.4 333 63.7
C03p70370 Brassica napus HOM05D007132 ORTHO05D009120 6.0e-120 434.9 350 60.3
A06p21200 Brassica napus HOM05D007132 ORTHO05D009120 1.0e-119 434.1 354 59.9
Thhalv10002595m.g Eutrema salsugineum HOM05D007132 ORTHO05D009120 1.3e-119 433.7 351 61.0
Sp2g03890 Schrenkiella parvula HOM05D007132 ORTHO05D009120 2.3e-119 433.0 355 59.4
Aa31LG9G15710 Aethionema arabicum HOM05D007132 ORTHO05D009120 3.0e-119 432.6 332 61.1
Prupe.4G147600 Prunus persica HOM05D007132 ORTHO05D009120 3.0e-119 432.6 279 74.6
CSS0020867 Camellia sinensis var. sinensis HOM05D007132 ORTHO05D009120 5.1e-119 431.8 338 63.6
BraA06t25207Z Brassica rapa HOM05D007132 ORTHO05D009120 6.7e-119 431.4 352 59.7
CARHR154210 Cardamine hirsuta HOM05D007132 ORTHO05D009120 6.7e-119 431.4 352 58.8
ATR0568G089 Amborella trichopoda HOM05D007132 ORTHO05D009120 1.9e-118 429.9 353 59.5
BcaB01g01051 Brassica carinata HOM05D007132 ORTHO05D009120 3.3e-118 429.1 353 59.5
AL5G24560 Arabidopsis lyrata HOM05D007132 ORTHO05D009120 1.6e-117 426.8 353 58.6
MSTRG.1761 Avicennia marina HOM05D007132 ORTHO05D009120 1.1e-116 424.1 358 57.0
Carub.0005s1173 Capsella rubella HOM05D007132 ORTHO05D009120 1.1e-116 424.1 333 60.4
Sc01g0005800 Simmondsia chinensis HOM05D007132 ORTHO05D009120 5.3e-116 421.8 308 63.6
AT3G45880 Arabidopsis thaliana HOM05D007132 ORTHO05D009120 2.6e-115 419.5 351 58.4
SGA_v2.0_scaffold111G31350 Striga asiatica HOM05D007132 ORTHO05D009120 5.8e-115 418.3 375 54.9
AUR62023023 Chenopodium quinoa HOM05D007132 ORTHO05D009120 1.3e-114 417.2 322 62.7
AUR62043353 Chenopodium quinoa HOM05D007132 ORTHO05D009120 1.3e-114 417.2 322 62.7
Peaxi162Scf00053g00715 Petunia axillaris HOM05D007132 ORTHO05D009120 3.2e-113 412.5 331 60.7
BcaC01g01945 Brassica carinata HOM05D007132 ORTHO05D009120 1.6e-112 410.2 309 61.5
SEGI_38459 Sequoiadendron giganteum HOM05D007132 ORTHO05D009120 2.1e-112 409.8 334 57.5
THA.LOC104798521 Tarenaya hassleriana HOM05D007132 ORTHO05D009120 8.2e-109 397.9 347 54.8
Haze_08441 Corylus avellana HOM05D007132 ORTHO05D009120 2.0e-107 393.3 282 67.0
Lalb_Chr05g0215041 Lupinus albus HOM05D007132 ORTHO05D009120 4.5e-107 392.1 281 66.2
Phvul.002G120400 Phaseolus vulgaris HOM05D007132 ORTHO05D009120 6.5e-106 388.3 277 65.0
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 4.2e-105 385.6 284 64.1
Os09g0483600 Oryza sativa ssp. japonica HOM05D007132 ORTHO05D009120 3.6e-104 382.5 360 53.3
Pp3c2_13200 Physcomitrium patens HOM05D007132 ORTHO05D009120 3.9e-103 379.0 358 53.6
Zm00001eb316510 Zea mays HOM05D007132 ORTHO05D009120 6.7e-103 378.3 345 56.2
unitig_46.g18229 Utricularia gibba HOM05D007132 ORTHO05D009120 9.7e-102 374.4 350 53.7
Hund11034 Selenicereus undatus HOM05D007132 ORTHO05D009120 1.3e-101 374.0 280 63.6
SMO367G0267 Selaginella moellendorffii HOM05D007132 ORTHO05D009120 2.4e-92 343.2 361 50.4
Ah.10g035250 Amaranthus hybridus HOM05D001758 ORTHO05D005969 1.7e-90 337.0 281 56.6
Nitab4.5_0000898g0130 Nicotiana tabacum HOM05D007132 ORTHO05D009120 2.2e-90 336.7 270 60.4
PSO675G1526 Papaver somniferum HOM05D007132 ORTHO05D009120 4.4e-86 322.4 248 62.1
MD10G1196200 Malus domestica HOM05D007132 ORTHO05D009120 3.6e-64 249.6 170 68.8
AagrBONN_evm.TU.Sc2ySwM_344.2529 Anthoceros agrestis HOM05D007132 ORTHO05D009120 7.0e-60 235.3 277 46.2
TAR629G3242 Trochodendron aralioides HOM05D007132 ORTHO05D009120 5.9e-59 232.3 187 61.0
Cc02_g31510 Coffea canephora HOM05D007132 ORTHO05D009120 2.3e-55 220.3 145 66.2
MCO03G301 Micromonas commoda HOM05D007132 ORTHO05D009120 2.4e-52 210.3 346 39.0
Sp5g15660 Schrenkiella parvula HOM05D007132 ORTHO05D009120 7.8e-51 205.3 268 45.1
GSVIVG01036861001 Vitis vinifera HOM05D007132 ORTHO05D009120 2.6e-46 190.3 141 62.4
TAR629G3340 Trochodendron aralioides HOM05D007132 ORTHO05D009120 1.7e-45 187.6 137 63.5
Cfa022513 Carpinus fangiana HOM05D007132 ORTHO05D009120 6.2e-40 169.1 320 34.1
PRCOL_00004459 Prasinoderma coloniale HOM05D007132 ORTHO05D009120 2.3e-34 150.6 297 33.0
Migut.E01364 Erythranthe guttata HOM05D007132 ORTHO05D009120 5.1e-34 149.4 134 56.0
Cre03.g175750 Chlamydomonas reinhardtii HOM05D007132 ORTHO05D009120 1.3e-26 124.8 243 32.9
FAN13G1029 Fragaria x ananassa HOM05D007132 ORTHO05D009181 1.3e-26 124.8 187 44.9
Rhsim11G0036100 Rhododendron simsii HOM05D007132 ORTHO05D009120 3.9e-26 123.2 93 66.7
FAN02G3822 Fragaria x ananassa HOM05D007132 ORTHO05D009120 4.2e-20 103.2 98 57.1
CDE11G0272 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 1.3e-16 91.7 98 50.0
Nitab4.5_0000480g0030 Nicotiana tabacum HOM05D007132 ORTHO05D009120 6.2e-16 89.4 75 56.0
Haze_08440 Corylus avellana HOM05D000433 ORTHO05D000443 3.4e-14 83.6 57 70.2
Psat2g145800 Pisum sativum HOM05D007132 ORTHO05D009120 3.4e-14 83.6 66 65.2
Lalb_Chr05g0215031 Lupinus albus HOM05D007132 ORTHO05D009120 2.2e-13 80.9 67 65.7
Medtr5g032230 Medicago truncatula HOM05D007132 ORTHO05D009120 3.8e-13 80.1 109 41.3
HPP92_017970 Vanilla planifolia HOM05D004419 ORTHO05D005480 3.5e-11 73.6 262 26.3
ECA233G0260 Erigeron canadensis HOM05D004419 ORTHO05D005480 1.8e-10 71.2 255 24.3
Atru.chr3.2519_Atru.chr3.2520 Acer truncatum HOM05D004419 ORTHO05D005480 2.3e-10 70.9 317 27.1
Pp3c17_10850 Physcomitrium patens HOM05D004419 ORTHO05D005480 3.9e-10 70.1 272 24.6
TWI60G0085 Tripterygium wilfordii HOM05D004419 ORTHO05D005480 6.7e-10 69.3 274 22.6
Phvul.011G056900 Phaseolus vulgaris HOM05D004419 ORTHO05D005480 1.1e-09 68.6 266 26.3
Ah.04g161770 Amaranthus hybridus HOM05D004419 ORTHO05D005480 1.9e-09 67.8 273 24.5
BcaB06g26154 Brassica carinata HOM05D004419 ORTHO05D005480 2.5e-09 67.4 256 23.4
Duzib168G0032 Durio zibethinus HOM05D004419 ORTHO05D005480 3.3e-09 67.0 256 25.0
Cfa009704 Carpinus fangiana HOM05D004419 ORTHO05D005480 4.3e-09 66.6 257 26.8
Haze_23052 Corylus avellana HOM05D004419 ORTHO05D005480 4.3e-09 66.6 255 25.5
TAR623G0092 Trochodendron aralioides HOM05D004419 ORTHO05D005480 4.3e-09 66.6 274 21.9
Ah.06g193530 Amaranthus hybridus HOM05D004419 ORTHO05D005480 5.6e-09 66.2 252 25.0
CSS0021936 Camellia sinensis var. sinensis HOM05D004419 ORTHO05D005480 5.6e-09 66.2 254 23.2
Haze_23057 Corylus avellana HOM05D004419 ORTHO05D005480 5.6e-09 66.2 257 26.8
PRCOL_00006664 Prasinoderma coloniale HOM05D004419 ORTHO05D005480 5.6e-09 66.2 259 27.4
BraA05t21680Z Brassica rapa HOM05D004419 ORTHO05D005480 9.6e-09 65.5 280 21.8
CANSAT54G1224 Cannabis sativa HOM05D004419 ORTHO05D005480 9.6e-09 65.5 271 22.9
Sp3g18830 Schrenkiella parvula HOM05D004419 ORTHO05D005480 9.6e-09 65.5 256 22.3
AagrBONN_evm.TU.Sc2ySwM_117.3437 Anthoceros agrestis HOM05D004419 ORTHO05D005480 1.3e-08 65.1 255 24.3
A05p27970 Brassica napus HOM05D004419 ORTHO05D005480 1.3e-08 65.1 280 21.8
CBR_g68529 Chara braunii HOM05D004419 ORTHO05D005480 2.1e-08 64.3 269 22.3
Lsat_1_v5_gn_6_50061 Lactuca sativa HOM05D004419 ORTHO05D005480 2.1e-08 64.3 254 23.2
Lalb_Chr01g0003291 Lupinus albus HOM05D004419 ORTHO05D005480 2.1e-08 64.3 257 26.1
TPR.G13661 Trifolium pratense HOM05D004419 ORTHO05D005633 2.1e-08 64.3 265 25.3
Aqoxy5G00398 Aquilegia oxysepala HOM05D004978 ORTHO05D005621 2.8e-08 63.9 300 24.0
EL10Ac4g10313 Beta vulgaris HOM05D004419 ORTHO05D005480 3.7e-08 63.5 261 24.1
Ciclev10015488m.g Citrus clementina HOM05D004419 ORTHO05D005480 3.7e-08 63.5 257 25.3
Glyma.11G130600 Glycine max HOM05D004419 ORTHO05D005480 3.7e-08 63.5 266 24.8
THA.LOC104816908 Tarenaya hassleriana HOM05D004419 ORTHO05D005480 3.7e-08 63.5 254 23.2
Carub.0003s2077 Capsella rubella HOM05D004419 ORTHO05D005480 4.8e-08 63.2 256 22.3
Glyma.12G055000 Glycine max HOM05D004419 ORTHO05D005480 4.8e-08 63.2 266 24.8
Os08g0508500 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 4.8e-08 63.2 254 22.8
Thecc.09G224700 Theobroma cacao HOM05D004419 ORTHO05D005480 6.2e-08 62.8 256 24.2
Ca_20582_v3 Cicer arietinum L. HOM05D004419 ORTHO05D005480 8.1e-08 62.4 265 24.9
Migut.D00562 Erythranthe guttata HOM05D004419 ORTHO05D005480 8.1e-08 62.4 258 25.2
Medtr4g066020 Medicago truncatula HOM05D004419 ORTHO05D005480 8.1e-08 62.4 264 24.6
AT3G20810 Arabidopsis thaliana HOM05D004419 ORTHO05D005480 1.1e-07 62.0 256 22.3
BcaC05g28276 Brassica carinata HOM05D004419 ORTHO05D005480 1.1e-07 62.0 264 22.3
C05p43260 Brassica napus HOM05D004419 ORTHO05D005480 1.1e-07 62.0 264 22.3
BolC5t33056H Brassica oleracea HOM05D004419 ORTHO05D005480 1.1e-07 62.0 264 22.3
Gohir.A06G108900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 1.1e-07 62.0 256 24.2
Os09g0489200 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 1.1e-07 62.0 262 25.2
Potri.001G016200 Populus trichocarpa HOM05D004419 ORTHO05D005480 1.1e-07 62.0 256 24.6
Rhsim11G0036200 Rhododendron simsii HOM05D007132 ORTHO05D009120 1.1e-07 62.0 50 68.0
GSVIVG01025322001 Vitis vinifera HOM05D004419 ORTHO05D005480 1.1e-07 62.0 254 22.8
Gohir.D06G112900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 1.4e-07 61.6 262 24.4
Sed0001509 Sechium edule HOM05D004419 ORTHO05D005480 1.4e-07 61.6 273 23.4
Hund22076 Selenicereus undatus HOM05D004419 ORTHO05D005480 1.4e-07 61.6 266 25.2
Cc01_g04260 Coffea canephora HOM05D004419 ORTHO05D005480 2.4e-07 60.8 259 27.0
Prupe.6G015700 Prunus persica HOM05D004419 ORTHO05D005480 2.4e-07 60.8 264 21.2
arahy.Tifrunner.gnm1.ann1.LD2WL8 Arachis hypogaea HOM05D004419 ORTHO05D005480 3.1e-07 60.5 256 24.2
MCO05G292 Micromonas commoda HOM05D004419 ORTHO05D005480 4.0e-07 60.1 141 29.1
Eucgr.J00814 Eucalyptus grandis HOM05D004419 ORTHO05D005480 5.3e-07 59.7 257 25.3
Hma1.2p1_0143F.1_g064490 Hydrangea macrophylla HOM05D004419 ORTHO05D005480 5.3e-07 59.7 258 22.9
Nitab4.5_0004115g0020 Nicotiana tabacum HOM05D004978 ORTHO05D005621 5.3e-07 59.7 304 25.3
PGR044G1133 Punica granatum HOM05D004978 ORTHO05D005621 9.0e-07 58.9 315 24.1
Cfa024691 Carpinus fangiana HOM05D003208 ORTHO05D005480 1.2e-06 58.5 310 20.6
Ciclev10019332m.g Citrus clementina HOM05D004978 ORTHO05D005621 1.5e-06 58.2 140 28.6
Duzib133G0140 Durio zibethinus HOM05D004978 ORTHO05D005621 2.0e-06 57.8 313 21.7
Dinv32884 Davidia involucrata HOM05D004978 ORTHO05D005621 7.6e-06 55.8 310 24.8
Nn7g36075 Nelumbo nucifera HOM05D004419 ORTHO05D005480 7.6e-06 55.8 256 23.4
Pp3c5_1010 Physcomitrium patens HOM05D004419 ORTHO05D005480 7.6e-06 55.8 129 27.1
HanXRQChr13g0403921 Helianthus annuus HOM05D004419 ORTHO05D005480 1.0e-05 55.5 146 25.3
MCO05G675 Micromonas commoda HOM05D009332 ORTHO05D044261 1.0e-05 55.5 204 25.0
PSO210G1189 Papaver somniferum HOM05D004978 ORTHO05D005621 1.0e-05 55.5 313 23.0


User provided reference genes

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