Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.0e-47 191.4 91 100.0
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 9.0e-44 179.9 88 94.3
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.7e-42 175.6 82 100.0
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 4.9e-42 174.1 82 98.8
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 4.9e-42 174.1 82 98.8
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 2.1e-37 158.7 80 91.2
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.4e-36 156.0 73 98.6
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 1.8e-36 155.6 79 89.9
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 1.5e-35 152.5 79 86.1
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 4.5e-35 151.0 79 87.3
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 4.5e-35 151.0 80 85.0
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 5.8e-35 150.6 83 81.9
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 9.9e-35 149.8 80 85.0
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 1.3e-34 149.4 83 80.7
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 1.7e-34 149.1 79 86.1
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 1.7e-34 149.1 79 86.1
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 2.2e-34 148.7 80 82.5
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 2.2e-34 148.7 79 86.1
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 2.2e-34 148.7 80 82.5
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 2.9e-34 148.3 79 84.8
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 2.9e-34 148.3 76 85.5
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 6.4e-34 147.1 79 82.3
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 8.4e-34 146.7 79 82.3
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 8.4e-34 146.7 80 81.2
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 2.4e-33 145.2 80 80.0
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 3.2e-33 144.8 79 83.5
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 9.3e-33 143.3 79 81.0
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 1.2e-32 142.9 80 80.0
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 1.6e-32 142.5 80 80.0
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 1.6e-32 142.5 80 80.0
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 2.1e-32 142.1 80 78.8
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 2.7e-32 141.7 81 79.0
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 2.7e-32 141.7 81 79.0
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 3.5e-32 141.4 86 70.9
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 3.5e-32 141.4 80 80.0
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 3.5e-32 141.4 76 78.9
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 4.6e-32 141.0 73 83.6
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 4.6e-32 141.0 74 82.4
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 7.9e-32 140.2 81 76.5
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 7.9e-32 140.2 81 76.5
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 1.0e-31 139.8 80 78.8
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 1.0e-31 139.8 79 77.2
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 1.8e-31 139.0 79 78.5
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 1.8e-31 139.0 89 71.9
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 1.8e-31 139.0 80 77.5
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 3.0e-31 138.3 80 81.2
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 3.0e-31 138.3 80 76.2
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 3.0e-31 138.3 80 76.2
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 3.9e-31 137.9 76 80.3
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 3.9e-31 137.9 79 79.7
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 3.9e-31 137.9 76 81.6
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 3.9e-31 137.9 86 75.6
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 3.9e-31 137.9 79 82.3
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 3.9e-31 137.9 79 78.5
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 5.1e-31 137.5 76 80.3
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 5.1e-31 137.5 76 84.2
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 5.1e-31 137.5 79 78.5
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 6.7e-31 137.1 80 77.5
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 6.7e-31 137.1 72 83.3
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 8.7e-31 136.7 89 74.2
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 8.7e-31 136.7 79 77.2
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 1.1e-30 136.3 79 78.5
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 1.1e-30 136.3 79 78.5
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 1.5e-30 136.0 76 78.9
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.5e-30 136.0 80 76.2
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 1.5e-30 136.0 80 76.2
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 1.5e-30 136.0 79 77.2
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 1.5e-30 136.0 86 76.7
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 1.9e-30 135.6 79 78.5
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 1.9e-30 135.6 80 76.2
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 2.5e-30 135.2 79 78.5
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.5e-30 135.2 80 76.2
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.5e-30 135.2 80 76.2
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 2.5e-30 135.2 80 75.0
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 3.3e-30 134.8 79 75.9
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 3.3e-30 134.8 74 78.4
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 4.3e-30 134.4 74 82.4
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 5.6e-30 134.0 76 81.6
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 7.4e-30 133.7 79 77.2
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 7.4e-30 133.7 80 75.0
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 9.6e-30 133.3 79 78.5
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 1.3e-29 132.9 76 77.6
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 1.3e-29 132.9 76 77.6
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 1.3e-29 132.9 71 81.7
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 1.6e-29 132.5 74 77.0
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 3.7e-29 131.3 76 78.9
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 4.8e-29 131.0 77 79.2
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 4.8e-29 131.0 79 75.9
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 6.2e-29 130.6 89 68.5
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 6.2e-29 130.6 63 92.1
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 6.2e-29 130.6 67 85.1
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 8.2e-29 130.2 64 90.6
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 8.2e-29 130.2 64 90.6
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 8.2e-29 130.2 74 74.3
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 8.2e-29 130.2 94 67.0
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 1.4e-28 129.4 79 74.7
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 1.4e-28 129.4 79 74.7
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 1.4e-28 129.4 79 74.7
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 1.8e-28 129.0 63 90.5
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 2.4e-28 128.6 80 73.8
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 3.1e-28 128.3 68 85.3
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 4.0e-28 127.9 88 68.2
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 4.0e-28 127.9 79 68.4
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 6.9e-28 127.1 79 74.7
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 9.0e-28 126.7 76 69.7
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 1.5e-27 125.9 79 73.4
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 1.5e-27 125.9 63 85.7
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 2.0e-27 125.6 65 84.6
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 2.6e-27 125.2 91 65.9
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 3.4e-27 124.8 72 70.8
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 3.4e-27 124.8 59 93.2
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 4.5e-27 124.4 79 75.9
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 4.5e-27 124.4 79 65.8
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 5.8e-27 124.0 68 79.4
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 1.0e-26 123.2 71 78.9
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 1.3e-26 122.9 72 76.4
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 8.4e-26 120.2 81 70.4
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 1.4e-25 119.4 108 55.6
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 2.5e-25 118.6 79 67.1
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 3.2e-25 118.2 80 68.8
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 3.2e-25 118.2 79 65.8
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 1.2e-24 116.3 79 67.1
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 4.6e-24 114.4 73 69.9
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 4.6e-24 114.4 74 67.6
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 1.8e-23 112.5 61 82.0
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 3.9e-23 111.3 84 64.3
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 1.1e-22 109.8 63 71.4
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 1.5e-22 109.4 80 68.8
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 1.9e-22 109.0 83 65.1
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 2.5e-22 108.6 55 85.5
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 3.3e-22 108.2 69 60.9
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 3.3e-22 108.2 64 78.1
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 5.7e-22 107.5 62 77.4
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 9.7e-22 106.7 52 90.4
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 9.7e-22 106.7 72 63.9
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 2.2e-21 105.5 53 83.0
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 2.8e-21 105.1 52 84.6
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 3.7e-21 104.8 76 65.8
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 3.7e-21 104.8 80 65.0
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 6.3e-21 104.0 72 59.7
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 8.2e-21 103.6 76 68.4
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 1.1e-20 103.2 56 82.1
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 2.4e-20 102.1 52 88.5
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 5.3e-20 100.9 97 51.5
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 6.9e-20 100.5 52 76.9
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 1.5e-19 99.4 76 59.2
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 1.7e-18 95.9 53 77.4
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 7.2e-17 90.5 95 50.5
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 7.2e-17 90.5 64 57.8
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 9.3e-17 90.1 63 68.3
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 1.2e-16 89.7 72 62.5
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 1.1e-14 83.2 45 84.4
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 2.2e-13 79.0 59 62.7
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 3.1e-12 75.1 57 56.1
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 9.1e-12 73.6 50 68.0
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 7.7e-11 70.5 59 61.0
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 5.0e-10 67.8 65 46.2
Haze_27300 Corylus avellana HOM05D004551 ORTHO05D005262 4.7e-08 61.2 60 41.7
Cfa026385 Carpinus fangiana HOM05D004551 ORTHO05D005262 1.0e-07 60.1 58 46.6


User provided reference genes

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