Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 0.0e+00 1614.7 929 100.0
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 0.0e+00 1552.3 931 96.8
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 0.0e+00 1549.3 929 96.8
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 0.0e+00 1545.0 929 96.0
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 0.0e+00 1532.7 929 95.8
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 0.0e+00 1411.0 932 87.3
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 0.0e+00 1138.3 944 72.2
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 0.0e+00 1100.5 946 70.6
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 0.0e+00 1089.3 945 69.7
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 1.4e-264 916.8 970 57.7
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 9.2e-261 904.0 958 58.0
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 3.0e-259 899.0 974 57.8
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.5e-255 886.7 974 56.0
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.6e-244 850.1 848 59.0
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 3.0e-243 845.9 995 53.9
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 5.1e-243 845.1 982 53.6
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 1.1e-234 817.4 1008 52.5
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 1.6e-233 813.5 971 53.1
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 2.8e-233 812.8 978 53.1
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 1.4e-232 810.4 988 51.9
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 1.8e-232 810.1 987 51.9
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 6.9e-232 808.1 974 53.2
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.1e-228 796.6 975 51.7
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 3.0e-227 792.7 969 53.1
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 1.5e-226 790.4 977 56.1
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 4.3e-226 788.9 966 52.5
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 1.3e-225 787.3 999 51.3
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 8.1e-225 784.6 980 51.2
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 5.3e-224 781.9 995 50.7
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 7.6e-223 778.1 998 52.4
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 9.9e-223 777.7 969 50.8
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.6e-220 770.4 1015 48.3
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.3e-219 767.3 972 51.6
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 1.8e-219 766.9 986 51.4
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 8.7e-219 764.6 986 51.1
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 2.5e-218 763.1 1004 49.6
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 3.3e-218 762.7 967 51.4
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.7e-217 759.2 952 51.1
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 6.2e-217 758.4 988 56.7
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 8.1e-217 758.1 963 52.3
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 1.8e-216 756.9 956 51.0
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 6.9e-216 755.0 984 50.2
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 2.6e-215 753.1 1027 47.9
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 7.6e-215 751.5 994 50.1
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 1.0e-214 751.1 994 50.0
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 1.0e-214 751.1 911 50.8
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 5.5e-213 745.3 896 51.1
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 2.7e-212 743.0 991 55.9
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 3.5e-212 742.7 790 55.9
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 3.0e-211 739.6 865 52.9
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 3.9e-211 739.2 1072 46.5
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 5.1e-211 738.8 1013 47.2
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 8.7e-211 738.0 981 49.3
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 8.7e-211 738.0 1037 46.9
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 4.3e-210 735.7 982 48.6
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.3e-209 734.2 968 50.3
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 1.6e-209 733.8 966 48.9
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 6.5e-206 721.8 1021 53.0
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 3.5e-204 716.1 980 49.0
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 4.8e-201 705.7 995 46.6
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 6.3e-201 705.3 952 49.1
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 4.1e-200 702.6 1050 47.9
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 2.2e-198 696.8 969 48.7
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 2.5e-197 693.3 1167 42.9
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 3.2e-197 693.0 1017 45.4
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 3.2e-197 693.0 851 50.4
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 3.0e-195 686.4 976 47.4
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.0e-195 686.4 990 47.6
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 8.8e-195 684.9 994 47.6
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 4.3e-194 682.6 1051 45.6
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 1.3e-193 681.0 1008 53.3
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 6.9e-192 675.2 992 47.2
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 9.1e-192 674.9 991 47.3
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 2.6e-191 673.3 1033 44.5
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 7.7e-191 671.8 947 47.0
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 1.1e-189 667.9 877 48.0
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 6.1e-188 662.1 1008 52.9
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 3.3e-186 656.4 968 45.9
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 5.7e-186 655.6 976 45.0
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 2.4e-184 650.2 833 50.2
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 1.7e-182 644.0 969 45.8
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 2.9e-182 643.3 970 44.2
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 5.0e-182 642.5 966 46.1
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 8.5e-182 641.7 967 45.7
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 3.2e-181 639.8 972 44.5
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.4e-179 634.4 970 44.3
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 1.8e-179 634.0 882 46.1
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 2.3e-179 633.6 970 44.9
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 3.0e-179 633.3 971 44.5
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 3.3e-178 629.8 823 48.6
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 3.3e-178 629.8 973 44.2
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 4.4e-178 629.4 974 45.4
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 5.7e-178 629.0 974 45.2
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 9.7e-178 628.2 911 45.7
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 1.4e-176 624.4 974 45.2
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.8e-176 624.0 884 47.2
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 1.2e-175 621.3 956 44.5
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 1.2e-175 621.3 956 44.5
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 2.0e-175 620.5 847 47.5
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 2.7e-175 620.2 913 44.8
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 3.5e-175 619.8 870 46.7
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.3e-174 617.8 995 44.2
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 5.0e-174 615.9 1002 44.0
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 2.1e-172 610.5 957 44.1
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 4.0e-171 606.3 1031 42.4
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 6.8e-171 605.5 985 42.5
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 1.2e-170 604.7 990 43.4
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 4.4e-170 602.8 1024 42.0
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.4e-168 597.8 970 43.2
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 5.9e-167 592.4 863 44.6
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.0e-166 591.7 884 47.5
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 5.0e-166 589.3 959 43.8
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 8.5e-166 588.6 959 44.3
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 8.8e-163 578.6 873 46.8
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 4.4e-162 576.2 981 42.2
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.3e-161 574.7 860 44.5
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 3.7e-161 573.2 860 44.4
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 2.0e-159 567.4 954 42.0
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 3.5e-159 566.6 806 46.4
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 5.0e-158 562.8 933 43.6
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 2.3e-155 553.9 991 40.4
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 2.0e-154 550.8 942 42.9
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 5.0e-150 536.2 842 42.5
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 2.3e-147 527.3 995 42.0
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 6.8e-147 525.8 954 40.7
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 7.0e-144 515.8 982 38.9
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 4.6e-143 513.1 1001 41.9
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.6e-132 478.0 284 87.0
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 4.3e-125 453.4 827 40.3
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 6.0e-119 433.0 845 39.6
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 1.6e-111 408.3 903 34.8
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 4.9e-105 386.7 994 33.0
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 4.9e-105 386.7 994 33.0
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 1.8e-99 368.2 727 38.0
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 1.2e-98 365.5 380 58.4
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 5.7e-93 346.7 589 42.4
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 3.1e-91 340.9 311 60.1
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 2.0e-90 338.2 951 31.9
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 7.9e-79 299.7 306 59.8
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 6.7e-70 270.0 968 28.0
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 6.5e-65 253.4 259 57.1
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 4.0e-62 244.2 478 40.0
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.6e-61 241.5 425 41.6
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 1.3e-60 239.2 473 39.1
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 8.3e-52 209.9 258 46.5
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 1.9e-48 198.7 140 75.0
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.8e-47 194.9 529 40.3
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 4.0e-38 164.5 162 59.9
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.7e-36 159.1 224 48.2
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 7.8e-34 150.2 163 56.4
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 5.0e-33 147.5 207 48.8
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 6.6e-33 147.1 210 42.9
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 3.3e-32 144.8 112 72.3
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 3.1e-30 138.3 156 46.8
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 3.5e-26 124.8 90 68.9
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 3.0e-25 121.7 117 54.7
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 8.9e-22 110.2 81 67.9
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 1.2e-21 109.8 72 75.0
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 5.4e-19 100.9 118 46.6
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 5.4e-19 100.9 89 57.3
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 1.6e-18 99.4 57 89.5
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 3.5e-18 98.2 73 67.1
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 7.8e-18 97.1 79 65.8
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 1.7e-17 95.9 66 75.8
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 2.3e-17 95.5 89 55.1
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 1.9e-16 92.4 90 55.6
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 2.5e-16 92.0 110 48.2
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.6e-15 89.4 60 81.7
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 2.2e-12 79.0 60 66.7
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.1e-11 76.6 89 49.4
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 9.2e-11 73.6 106 48.1
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 2.7e-10 72.0 99 47.5
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 2.7e-10 72.0 126 38.9
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 4.6e-10 71.2 60 58.3
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 1.1e-08 66.6 95 40.0
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 5.6e-08 64.3 60 51.7
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 2.8e-07 62.0 91 42.9
CSS0046083 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.6e-07 61.6 148 43.2
MCO02G174 Micromonas commoda HOM05D003782 ORTHO05D004361 1.4e-06 59.7 308 24.7
CSS0040150 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.4e-06 58.9 67 52.2
Zm00001eb274810 Zea mays HOM05D003782 ORTHO05D004361 2.4e-06 58.9 47 61.7
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 5.2e-06 57.8 109 36.7


User provided reference genes

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