Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G2095 Fragaria x ananassa HOM05D006357 ORTHO05D007925 4.1e-96 354.8 185 100.0
FvH4_3g25160 Fragaria vesca HOM05D006357 ORTHO05D007925 1.2e-95 353.2 185 99.5
FAN11G2870 Fragaria x ananassa HOM05D006357 ORTHO05D007925 2.8e-92 342.0 178 99.4
FvH4_3g25140 Fragaria vesca HOM05D006357 ORTHO05D007925 1.1e-80 303.5 183 84.2
FAN21G3578 Fragaria x ananassa HOM05D006357 ORTHO05D007925 1.6e-79 299.7 183 83.1
RcHm_v2.0_Chr5g0046241 Rosa chinensis HOM05D006357 ORTHO05D007925 6.0e-79 297.7 185 82.2
Prupe.6G132600 Prunus persica HOM05D006357 ORTHO05D007925 6.7e-70 267.7 175 73.7
CANSAT54G2809 Cannabis sativa HOM05D006357 ORTHO05D007925 4.8e-68 261.5 175 73.1
CiPaw.13G134700 Carya illinoinensis HOM05D006357 ORTHO05D007925 1.1e-67 260.4 175 73.1
Prupe.6G132700 Prunus persica HOM05D006357 ORTHO05D007925 9.0e-67 257.3 178 69.7
MD03G1147800 Malus domestica HOM05D006357 ORTHO05D007925 1.5e-66 256.5 178 71.3
MD11G1166600 Malus domestica HOM05D006357 ORTHO05D007925 3.4e-66 255.4 174 70.1
Lalb_Chr01g0004891 Lupinus albus HOM05D006357 ORTHO05D007925 6.4e-65 251.1 175 68.0
Thecc.09G281200 Theobroma cacao HOM05D006357 ORTHO05D007925 1.4e-64 250.0 178 67.4
Atru.chr3.3206 Acer truncatum HOM05D006357 ORTHO05D007925 1.9e-64 249.6 178 67.4
MELO3C014499.2 Cucumis melo HOM05D006357 ORTHO05D007925 4.2e-64 248.4 179 67.6
CSS0003287 Camellia sinensis var. sinensis HOM05D006357 ORTHO05D007925 5.5e-64 248.1 178 68.5
Cfa010003 Carpinus fangiana HOM05D006357 ORTHO05D007925 5.5e-64 248.1 178 68.0
Atru.chr3.3208 Acer truncatum HOM05D006357 ORTHO05D007925 7.1e-64 247.7 178 66.9
Phvul.011G095000 Phaseolus vulgaris HOM05D006357 ORTHO05D007925 9.3e-64 247.3 177 67.8
arahy.Tifrunner.gnm1.ann1.5186VC Arachis hypogaea HOM05D006357 ORTHO05D007925 1.2e-63 246.9 179 69.8
ClCG02G022220 Citrullus lanatus HOM05D006357 ORTHO05D007925 1.2e-63 246.9 179 67.6
Duzib150G0376 Durio zibethinus HOM05D006357 ORTHO05D007925 1.2e-63 246.9 175 68.0
arahy.Tifrunner.gnm1.ann1.JXBE2X Arachis hypogaea HOM05D006357 ORTHO05D007925 1.6e-63 246.5 179 69.8
Rhsim01G0204700 Rhododendron simsii HOM05D006357 ORTHO05D007925 1.6e-63 246.5 176 68.2
Manes.11G162800 Manihot esculenta HOM05D006357 ORTHO05D007925 2.1e-63 246.1 178 68.0
CsaV3_6G038350 Cucumis sativus L. HOM05D006357 ORTHO05D007925 2.7e-63 245.7 179 65.9
Glyma.11G182400 Glycine max HOM05D006357 ORTHO05D007925 4.6e-63 245.0 184 63.6
PSO801G0234 Papaver somniferum HOM05D006357 ORTHO05D007925 4.6e-63 245.0 173 68.2
VMungo1127G1055 Vigna mungo HOM05D006357 ORTHO05D007925 1.3e-62 243.4 177 66.7
Gohir.A08G005700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.8e-62 243.0 178 66.3
Gohir.D08G016000 Gossypium hirsutum HOM05D006357 ORTHO05D007925 3.0e-62 242.3 177 65.5
Gorai.004G010300 Gossypium raimondii HOM05D006357 ORTHO05D007925 3.0e-62 242.3 177 65.5
PSO339G3266 Papaver somniferum HOM05D006357 ORTHO05D007925 3.9e-62 241.9 173 67.6
Dinv22833 Davidia involucrata HOM05D006357 ORTHO05D007925 5.1e-62 241.5 178 64.0
A06p22010 Brassica napus HOM05D006357 ORTHO05D007925 6.7e-62 241.1 178 66.9
BraA06t25289Z Brassica rapa HOM05D006357 ORTHO05D007925 6.7e-62 241.1 178 66.9
CARHR104480 Cardamine hirsuta HOM05D006357 ORTHO05D007925 8.7e-62 240.7 178 66.9
Lj3g0017887 Lotus japonicus HOM05D006357 ORTHO05D007925 8.7e-62 240.7 180 64.4
Ciclev10029363m.g Citrus clementina HOM05D006357 ORTHO05D007925 1.1e-61 240.4 178 65.2
PGR119G0351 Punica granatum HOM05D006357 ORTHO05D007925 1.5e-61 240.0 179 67.0
QL01p012073 Quercus lobata HOM05D006357 ORTHO05D007925 1.5e-61 240.0 174 66.7
Thhalv10010749m.g Eutrema salsugineum HOM05D006357 ORTHO05D007925 1.9e-61 239.6 179 66.5
BcaB01g01165 Brassica carinata HOM05D006357 ORTHO05D007925 4.3e-61 238.4 178 66.9
MBI01_g14623_MAGBIO Magnolia biondii HOM05D006357 ORTHO05D007925 4.3e-61 238.4 179 64.2
Nitab4.5_0006120g0030 Nicotiana tabacum HOM05D006357 ORTHO05D007925 4.3e-61 238.4 182 65.4
Carub.0005s1011 Capsella rubella HOM05D006357 ORTHO05D007925 9.6e-61 237.3 178 66.3
Sp5g16810 Schrenkiella parvula HOM05D006357 ORTHO05D007925 1.3e-60 236.9 178 65.7
TAR633G1946 Trochodendron aralioides HOM05D006357 ORTHO05D007925 1.6e-60 236.5 176 65.9
Ca_19414_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 2.1e-60 236.1 184 62.0
Gohir.D07G114400 Gossypium hirsutum HOM05D006357 ORTHO05D007925 2.8e-60 235.7 178 63.5
Solyc11g068550.1 Solanum lycopersicum HOM05D006357 ORTHO05D007925 3.7e-60 235.3 184 64.1
Sopen11g027270 Solanum pennellii HOM05D006357 ORTHO05D007925 3.7e-60 235.3 184 64.1
BcaC01g02047 Brassica carinata HOM05D006357 ORTHO05D007925 4.8e-60 235.0 178 65.7
C03p69190 Brassica napus HOM05D006357 ORTHO05D007925 4.8e-60 235.0 178 65.7
BolC3t19173H Brassica oleracea HOM05D006357 ORTHO05D007925 4.8e-60 235.0 178 65.7
Lsat_1_v5_gn_1_59200 Lactuca sativa HOM05D006357 ORTHO05D007925 4.8e-60 235.0 179 64.2
QL01p012091 Quercus lobata HOM05D006357 ORTHO05D007925 4.8e-60 235.0 174 64.9
GSVIVG01036107001 Vitis vinifera HOM05D006357 ORTHO05D007925 6.2e-60 234.6 175 66.9
Gorai.001G122700 Gossypium raimondii HOM05D006357 ORTHO05D007925 8.1e-60 234.2 178 62.9
Nitab4.5_0005641g0010 Nicotiana tabacum HOM05D006357 ORTHO05D007925 8.1e-60 234.2 182 63.7
Sc06g0008780 Simmondsia chinensis HOM05D006357 ORTHO05D007925 1.1e-59 233.8 176 61.4
Lj2P966T16 Lonicera japonica HOM05D006357 ORTHO05D007925 1.4e-59 233.4 179 63.7
Aqoxy2G01095 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 1.8e-59 233.0 178 64.0
Medtr4g052840 Medicago truncatula HOM05D006357 ORTHO05D007925 1.8e-59 233.0 182 62.6
SalBow3G2384 Salvia bowleyana HOM05D006357 ORTHO05D007925 2.4e-59 232.6 183 61.2
Eucgr.J00502 Eucalyptus grandis HOM05D006357 ORTHO05D007925 3.1e-59 232.3 174 64.9
AT3G44380 Arabidopsis thaliana HOM05D006357 ORTHO05D007925 4.0e-59 231.9 178 65.2
Gohir.A07G110700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 4.0e-59 231.9 178 62.4
THA.LOC104814785 Tarenaya hassleriana HOM05D006357 ORTHO05D007925 4.0e-59 231.9 177 64.4
Hma1.2p1_0587F.1_g184180 Hydrangea macrophylla HOM05D006357 ORTHO05D007925 6.9e-59 231.1 178 62.4
TWI75G1708 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 6.9e-59 231.1 178 64.0
Actinidia37077 Actinidia chinensis HOM05D006357 ORTHO05D007925 1.2e-58 230.3 176 63.6
Ah.08g215640 Amaranthus hybridus HOM05D006357 ORTHO05D007925 1.2e-58 230.3 179 63.7
Psat7g187640 Pisum sativum HOM05D006357 ORTHO05D007925 1.2e-58 230.3 177 64.4
AL5G22540 Arabidopsis lyrata HOM05D006357 ORTHO05D007925 1.5e-58 229.9 178 64.6
Ca_26666_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 1.5e-58 229.9 184 60.9
Nn6g34850 Nelumbo nucifera HOM05D006357 ORTHO05D007925 2.0e-58 229.6 172 62.2
TWI79G0514 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 2.0e-58 229.6 178 63.5
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 2.6e-58 229.2 171 67.3
Migut.N02483 Erythranthe guttata HOM05D006357 ORTHO05D007925 3.4e-58 228.8 185 61.1
Haze_23361 Corylus avellana HOM05D006357 ORTHO05D007925 7.6e-58 227.6 162 69.1
TPR.G17225 Trifolium pratense HOM05D006357 ORTHO05D007925 7.6e-58 227.6 177 63.8
EL10Ac7g15835 Beta vulgaris HOM05D006357 ORTHO05D007925 1.3e-57 226.9 179 60.3
Potri.001G218400 Populus trichocarpa HOM05D006357 ORTHO05D007925 2.9e-57 225.7 179 59.8
Sabra16G0125700 Salix brachista HOM05D006357 ORTHO05D007925 2.9e-57 225.7 179 60.9
unitig_699.g19178 Utricularia gibba HOM05D006357 ORTHO05D007925 1.1e-56 223.8 183 61.2
MSTRG.12374 Avicennia marina HOM05D006357 ORTHO05D007925 3.2e-56 222.2 171 63.2
Cc01_g08980 Coffea canephora HOM05D006357 ORTHO05D007925 3.2e-56 222.2 174 60.9
HanXRQChr01g0024501 Helianthus annuus HOM05D006357 ORTHO05D007925 3.2e-56 222.2 179 60.3
PGR102G0344 Punica granatum HOM05D006357 ORTHO05D007925 3.2e-56 222.2 174 61.5
SGA_v2.0_scaffold177G39425 Striga asiatica HOM05D006357 ORTHO05D007925 6.0e-55 218.0 184 56.5
Sed0020794 Sechium edule HOM05D006357 ORTHO05D007925 4.3e-53 211.8 179 59.2
Lalb_Chr03g0028161 Lupinus albus HOM05D006357 ORTHO05D007925 5.7e-53 211.5 177 59.9
Aqoxy4G02740 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 4.8e-52 208.4 176 60.8
Dinv42541 Davidia involucrata HOM05D006357 ORTHO05D007925 2.0e-50 203.0 162 62.3
DCAR_006168 Daucus carota HOM05D006357 ORTHO05D007925 1.0e-49 200.7 173 57.8
Sc21g0007020 Simmondsia chinensis HOM05D006357 ORTHO05D007925 1.9e-48 196.4 183 54.6
PSO384G0917 Papaver somniferum HOM05D006357 ORTHO05D007925 7.9e-47 191.0 162 63.0
Nn6g34849 Nelumbo nucifera HOM05D006357 ORTHO05D007925 5.1e-46 188.3 181 50.8
Os08g0558300 Oryza sativa ssp. japonica HOM05D006357 ORTHO05D007925 8.7e-46 187.6 175 54.3
PSO339G1489 Papaver somniferum HOM05D006357 ORTHO05D007925 1.9e-45 186.4 159 61.0
Ah.15g095880 Amaranthus hybridus HOM05D006357 ORTHO05D007925 2.4e-43 179.5 189 50.3
AUR62009745 Chenopodium quinoa HOM05D006357 ORTHO05D007925 2.4e-43 179.5 197 47.7
RcHm_v2.0_Chr5g0046191 Rosa chinensis HOM05D006357 ORTHO05D007925 2.4e-43 179.5 119 79.0
AUR62036192 Chenopodium quinoa HOM05D006357 ORTHO05D007925 2.6e-42 176.0 196 46.9
AUR62036201 Chenopodium quinoa HOM05D006357 ORTHO05D007925 4.2e-40 168.7 141 60.3
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 1.6e-39 166.8 136 61.0
PGSC0003DMG400026335 Solanum tuberosum HOM05D006357 ORTHO05D007925 5.1e-38 161.8 108 74.1
Mapoly0079s0020 Marchantia polymorpha HOM05D006357 ORTHO05D007925 1.8e-35 153.3 179 45.3
SMO347G0335 Selaginella moellendorffii HOM05D006357 ORTHO05D007925 1.8e-35 153.3 167 47.3
AagrBONN_evm.TU.Sc2ySwM_117.3687 Anthoceros agrestis HOM05D006357 ORTHO05D007925 6.9e-35 151.4 178 43.3
ATR0820G064 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.0e-33 147.5 177 45.2
Pp3c21_10640 Physcomitrium patens HOM05D006357 ORTHO05D007925 3.2e-32 142.5 181 42.0
SEGI_40876 Sequoiadendron giganteum HOM05D006357 ORTHO05D007925 1.4e-30 137.1 174 43.1
Cpa.g.sc195.8 Carica papaya HOM05D006357 ORTHO05D007925 3.0e-30 136.0 104 64.4
Pp3c2_16750 Physcomitrium patens HOM05D006357 ORTHO05D007925 3.9e-30 135.6 177 42.4
Actinidia35469 Actinidia chinensis HOM05D006357 ORTHO05D007925 6.3e-28 128.3 93 66.7
ATR0820G202 Amborella trichopoda HOM05D006357 ORTHO05D007925 2.6e-26 122.9 158 46.2
Pp3c9_9450 Physcomitrium patens HOM05D006357 ORTHO05D007925 3.8e-25 119.0 159 37.7
AUR62036200 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.5e-21 107.1 95 55.8
AUR62044742 Chenopodium quinoa HOM05D006357 ORTHO05D007925 7.0e-19 98.2 75 68.0
ATR0820G128 Amborella trichopoda HOM05D006357 ORTHO05D007925 5.0e-17 92.0 84 57.1
Glyma.12G090400 Glycine max HOM05D006357 ORTHO05D007925 2.0e-10 70.1 71 42.3
CDE07G1813 Ceratophyllum demersum HOM05D003111 ORTHO05D003502 2.3e-09 66.6 139 30.9
Oeu026920.1 Olea europaea HOM05D000172 ORTHO05D000273 1.2e-07 60.8 159 30.8
SHI02767 Sapria himalayana HOM05D003111 ORTHO05D003502 2.1e-07 60.1 174 29.3
HPP92_019041 Vanilla planifolia HOM05D000172 ORTHO05D000273 2.1e-07 60.1 151 27.8
HPP92_019617 Vanilla planifolia HOM05D003111 ORTHO05D003502 2.1e-07 60.1 145 30.3
HPP92_019623 Vanilla planifolia HOM05D003111 ORTHO05D003502 2.1e-07 60.1 145 30.3
Os05g0482501 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D000273 2.8e-07 59.7 134 30.6
RcHm_v2.0_Chr3g0459631 Rosa chinensis HOM05D000172 ORTHO05D000273 3.6e-07 59.3 150 32.7
SMO119G0408 Selaginella moellendorffii HOM05D000172 ORTHO05D000273 8.0e-07 58.2 131 29.8
Lj2C55T1 Lonicera japonica HOM05D000172 ORTHO05D000273 1.8e-06 57.0 152 28.3
Sed0018523 Sechium edule HOM05D000172 ORTHO05D000273 1.8e-06 57.0 133 32.3
Hund26161 Selenicereus undatus HOM05D003111 ORTHO05D003502 1.8e-06 57.0 145 26.9
Ah.15g092330 Amaranthus hybridus HOM05D000172 ORTHO05D000273 2.3e-06 56.6 163 24.5
DCAR_016220 Daucus carota HOM05D003111 ORTHO05D003502 3.0e-06 56.2 129 26.4
A08p07040 Brassica napus HOM05D003111 ORTHO05D003502 4.0e-06 55.8 137 28.5
BraA08t32715Z Brassica rapa HOM05D003111 ORTHO05D003502 4.0e-06 55.8 137 28.5
Sed0013141 Sechium edule HOM05D000172 ORTHO05D000273 6.8e-06 55.1 158 31.0


User provided reference genes

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