Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.8e-218 762.3 388 100.0
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 6.4e-216 753.8 388 98.7
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.5e-209 732.6 388 97.4
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 1.3e-200 703.0 388 93.6
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 1.2e-193 679.9 389 90.7
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 2.2e-168 595.9 374 82.6
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 1.6e-158 563.1 396 75.5
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 5.9e-153 544.7 396 73.2
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 6.5e-152 541.2 396 74.7
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 8.5e-152 540.8 357 77.6
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 8.5e-152 540.8 357 77.6
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 1.9e-151 539.7 382 73.0
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 2.5e-151 539.3 357 77.3
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 3.2e-151 538.9 394 73.6
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 2.7e-150 535.8 375 75.5
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 3.6e-150 535.4 361 76.7
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 1.0e-149 533.9 371 74.9
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 4.0e-149 531.9 385 72.2
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 4.0e-149 531.9 378 74.1
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 1.5e-148 530.0 368 75.3
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 4.4e-148 528.5 378 73.5
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 7.5e-148 527.7 376 73.7
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 1.3e-147 526.9 365 75.3
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 2.8e-147 525.8 388 71.4
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 4.8e-147 525.0 389 71.0
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 4.8e-147 525.0 385 71.2
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 6.3e-147 524.6 397 71.0
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 4.1e-146 521.9 352 76.4
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 5.4e-146 521.5 340 78.8
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 5.4e-146 521.5 358 76.3
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 1.6e-145 520.0 362 75.1
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 1.0e-144 517.3 386 71.8
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 2.9e-144 515.8 379 72.0
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 5.0e-144 515.0 380 72.6
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 5.0e-144 515.0 354 75.1
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 1.5e-143 513.5 340 77.6
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 3.3e-143 512.3 386 70.5
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 3.3e-143 512.3 395 72.2
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 5.5e-143 511.5 402 69.4
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 5.5e-143 511.5 402 69.4
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 1.2e-142 510.4 385 70.4
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 4.7e-142 508.4 385 70.1
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 1.4e-141 506.9 305 83.6
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 1.8e-141 506.5 386 70.2
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 3.0e-141 505.8 388 70.4
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 4.4e-140 501.9 387 70.5
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 4.4e-140 501.9 397 68.5
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 1.3e-139 500.4 392 69.9
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.7e-139 500.0 369 71.5
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 1.7e-139 500.0 384 69.3
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 3.1e-138 495.7 401 67.3
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 3.1e-138 495.7 382 69.1
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 7.0e-138 494.6 386 68.9
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 9.2e-138 494.2 334 76.0
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 1.6e-137 493.4 391 69.6
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 3.5e-137 492.3 384 69.5
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 5.9e-137 491.5 383 70.0
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 5.9e-137 491.5 387 69.3
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 1.3e-136 490.3 385 69.9
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 5.0e-136 488.4 383 66.3
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 6.6e-136 488.0 388 68.8
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 6.6e-136 488.0 472 59.5
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 5.6e-135 485.0 394 67.3
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 5.6e-135 485.0 381 67.7
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 9.5e-135 484.2 291 80.4
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 1.2e-134 483.8 327 75.5
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 1.6e-134 483.4 342 74.9
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 2.1e-134 483.0 340 72.4
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 4.7e-134 481.9 341 72.4
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 8.0e-134 481.1 390 66.7
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 8.0e-134 481.1 388 67.3
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 1.0e-133 480.7 354 70.1
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.8e-133 479.9 372 67.5
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 2.3e-133 479.6 376 68.4
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 2.0e-132 476.5 378 64.6
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 4.4e-132 475.3 345 68.4
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 7.5e-132 474.6 386 66.6
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 7.5e-132 474.6 404 63.9
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 1.7e-131 473.4 392 65.3
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 4.9e-131 471.9 376 65.7
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 1.4e-130 470.3 303 80.2
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 1.9e-130 469.9 375 66.1
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 4.1e-130 468.8 396 64.4
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 7.0e-130 468.0 329 73.3
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 4.6e-129 465.3 357 69.5
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 7.8e-129 464.5 386 65.5
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 2.3e-128 463.0 314 74.2
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 3.0e-128 462.6 336 72.0
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 3.9e-128 462.2 319 72.4
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 6.6e-128 461.5 386 66.1
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 1.5e-127 460.3 386 65.8
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 1.9e-127 459.9 392 64.3
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 6.2e-126 454.9 387 64.3
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 3.1e-125 452.6 390 65.1
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 4.0e-125 452.2 381 65.9
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 8.9e-125 451.1 297 76.1
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 1.2e-124 450.7 390 63.1
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 2.0e-124 449.9 331 68.9
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 2.6e-124 449.5 321 71.3
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 2.6e-124 449.5 316 72.5
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 4.4e-124 448.7 374 62.6
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 2.9e-123 446.0 379 63.3
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 3.7e-123 445.7 387 61.8
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.1e-122 444.1 348 68.4
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 1.9e-122 443.4 378 63.5
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 2.7e-121 439.5 385 62.1
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 2.7e-121 439.5 385 62.1
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 3.5e-121 439.1 385 62.1
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 1.0e-120 437.6 324 71.0
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 1.3e-120 437.2 374 61.5
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 1.3e-120 437.2 331 65.6
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 2.3e-120 436.4 326 65.0
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 3.9e-120 435.6 385 61.6
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 6.6e-120 434.9 386 61.1
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 6.6e-120 434.9 374 61.8
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 6.6e-120 434.9 371 61.2
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 8.6e-120 434.5 369 62.3
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 1.1e-119 434.1 369 61.2
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 1.9e-119 433.3 351 63.5
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 4.3e-119 432.2 369 60.7
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 6.2e-118 428.3 230 95.2
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 8.1e-118 427.9 335 62.1
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 1.2e-116 424.1 384 60.4
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 1.2e-116 424.1 400 59.8
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 3.2e-114 416.0 353 62.6
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 3.5e-113 412.5 384 59.4
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 7.8e-113 411.4 384 58.3
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 7.8e-113 411.4 384 58.3
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 3.9e-112 409.1 286 67.1
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 1.5e-111 407.1 384 57.6
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 1.6e-110 403.7 384 57.3
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 2.1e-110 403.3 297 71.4
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 1.1e-109 401.0 339 61.9
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 5.6e-103 378.6 320 64.7
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 4.8e-102 375.6 373 55.5
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 3.8e-99 365.9 264 67.0
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 4.6e-97 359.0 282 68.8
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 9.6e-95 351.3 291 66.0
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 1.3e-94 350.9 307 56.7
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 6.2e-94 348.6 213 81.2
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 2.2e-91 340.1 324 54.9
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 5.4e-90 335.5 258 64.7
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 2.3e-88 330.1 349 51.6
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 8.7e-88 328.2 271 59.4
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 1.3e-86 324.3 324 52.5
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 1.5e-84 317.4 238 71.4
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 1.8e-80 303.9 224 70.1
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 3.9e-80 302.8 218 70.2
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 1.3e-78 297.7 195 76.9
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 2.1e-78 297.0 218 70.6
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 1.2e-73 281.2 251 61.0
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 1.8e-69 267.3 281 49.8
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 3.5e-52 209.9 173 65.3
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 7.2e-50 202.2 152 69.7
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 2.8e-46 190.3 159 66.0
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 4.5e-44 183.0 161 63.4
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 3.4e-39 166.8 104 75.0
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 5.7e-39 166.0 166 56.0
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 1.4e-32 144.8 108 67.6
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 3.0e-24 117.1 90 58.9
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 7.5e-23 112.5 269 27.1
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 1.6e-20 104.8 328 27.1


User provided reference genes

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