Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 2.8e-94 348.6 174 100.0
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 3.8e-91 338.2 174 98.3
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 5.4e-90 334.3 174 97.1
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 5.4e-90 334.3 174 97.1
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 2.4e-85 318.9 174 93.1
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 1.3e-83 313.2 174 90.2
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 1.7e-83 312.8 174 90.2
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 1.1e-82 310.1 174 88.5
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 2.7e-81 305.4 174 87.4
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 3.9e-80 301.6 174 85.1
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 2.5e-79 298.9 174 84.5
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 2.5e-79 298.9 174 84.5
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 3.3e-79 298.5 174 84.5
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 7.4e-79 297.4 174 83.9
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 1.6e-78 296.2 174 83.9
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 2.1e-78 295.8 174 83.3
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 1.5e-76 289.7 174 80.5
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 1.7e-75 286.2 174 80.5
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 2.9e-75 285.4 174 79.9
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 3.8e-75 285.0 174 79.9
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 8.4e-75 283.9 174 80.5
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 1.1e-74 283.5 174 80.5
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 1.9e-74 282.7 174 79.3
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 5.5e-74 281.2 174 79.3
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 7.1e-74 280.8 174 78.2
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 7.1e-74 280.8 174 77.6
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 1.2e-73 280.0 174 77.6
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 2.1e-73 279.3 174 77.6
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 6.0e-73 277.7 174 78.7
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 1.0e-72 276.9 174 78.7
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 1.0e-72 276.9 174 77.0
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 1.0e-72 276.9 175 78.9
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 1.8e-72 276.2 174 79.3
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 2.5e-71 272.3 194 71.6
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 4.3e-71 271.6 174 76.4
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 5.7e-71 271.2 174 74.7
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 1.3e-70 270.0 174 76.4
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 1.6e-70 269.6 174 75.9
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 2.8e-70 268.9 174 75.3
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 4.8e-70 268.1 174 74.1
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 4.8e-70 268.1 174 74.1
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 4.8e-70 268.1 174 74.1
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 4.8e-70 268.1 174 74.1
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 6.3e-70 267.7 174 74.1
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 6.3e-70 267.7 174 74.7
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 6.3e-70 267.7 174 74.7
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 6.3e-70 267.7 174 74.7
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 1.4e-69 266.5 174 73.6
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 3.1e-69 265.4 175 73.7
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 4.1e-69 265.0 174 75.3
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 5.3e-69 264.6 174 75.3
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 1.5e-68 263.1 174 73.6
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 1.5e-68 263.1 174 75.3
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 2.6e-68 262.3 174 73.6
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 5.9e-68 261.2 171 75.4
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 1.0e-67 260.4 174 74.1
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 1.3e-67 260.0 174 73.0
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 1.7e-67 259.6 174 73.6
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 1.7e-67 259.6 174 71.8
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 2.2e-67 259.2 174 71.3
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 2.9e-67 258.8 174 71.8
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 2.9e-67 258.8 158 81.0
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 3.8e-67 258.5 198 67.7
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 6.5e-67 257.7 174 73.0
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 1.9e-66 256.1 174 71.8
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 2.5e-66 255.8 174 71.3
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 7.2e-66 254.2 174 70.1
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 7.2e-66 254.2 174 72.4
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 9.3e-66 253.8 173 69.9
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 9.3e-66 253.8 171 74.9
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 1.6e-65 253.1 174 70.7
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 1.6e-65 253.1 174 71.8
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 2.1e-65 252.7 174 72.4
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 2.7e-65 252.3 174 71.8
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.3e-64 250.0 174 71.3
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 1.3e-64 250.0 174 70.7
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 3.9e-64 248.4 174 70.7
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.1e-63 246.9 174 70.1
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 3.3e-63 245.4 166 71.1
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 3.3e-63 245.4 174 69.5
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 4.3e-63 245.0 174 70.1
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 1.3e-62 243.4 166 70.5
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 1.7e-62 243.0 173 70.5
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 2.2e-62 242.7 174 68.4
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 2.8e-62 242.3 143 79.7
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 8.2e-62 240.7 146 82.9
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 1.1e-61 240.4 174 69.0
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 1.5e-60 236.5 171 68.4
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 3.4e-60 235.3 174 69.0
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 4.5e-60 235.0 174 69.0
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 1.7e-59 233.0 174 64.9
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 1.9e-58 229.6 174 67.8
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 4.2e-58 228.4 174 66.1
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 5.5e-58 228.0 156 71.2
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 9.4e-58 227.3 151 70.2
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 9.4e-58 227.3 174 66.1
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 1.6e-57 226.5 174 66.7
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 2.1e-57 226.1 175 66.3
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 7.9e-57 224.2 174 65.5
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 7.9e-57 224.2 174 65.5
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 1.0e-56 223.8 174 63.8
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 1.0e-56 223.8 174 64.9
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 5.1e-56 221.5 174 64.4
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 8.8e-56 220.7 174 63.2
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 2.6e-55 219.2 174 63.8
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 7.4e-55 217.6 174 63.8
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 1.3e-54 216.9 153 70.6
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 8.2e-54 214.2 122 82.0
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 2.4e-53 212.6 172 62.8
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 3.1e-53 212.2 172 62.8
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 4.1e-53 211.8 174 62.6
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 2.6e-52 209.1 174 62.1
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 2.6e-52 209.1 196 56.6
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 9.4e-50 200.7 122 73.8
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 1.6e-49 199.9 176 59.7
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 1.5e-47 193.4 239 46.4
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 2.0e-47 193.0 122 74.6
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 4.1e-45 185.3 171 54.4
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 1.6e-44 183.3 175 53.7
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 2.0e-44 183.0 182 53.3
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 6.1e-41 171.4 173 53.2
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 6.7e-40 167.9 176 48.3
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 8.8e-40 167.5 176 50.6
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 5.7e-39 164.9 95 81.1
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 9.1e-37 157.5 173 45.7
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 1.6e-36 156.8 94 74.5
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 5.9e-36 154.8 93 75.3
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 2.2e-35 152.9 94 71.3
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 4.5e-28 128.6 127 57.5
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 2.9e-27 125.9 85 68.2
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 4.0e-24 115.5 96 51.0
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 2.0e-23 113.2 75 68.0
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 7.5e-23 111.3 67 76.1
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 5.4e-21 105.1 85 62.4
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.0e-19 100.9 55 78.2
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 1.7e-19 100.1 169 34.3
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 6.6e-19 98.2 53 81.1
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 2.3e-16 89.7 48 81.2
PRCOL_00004780 Prasinoderma coloniale HOM05D005031 ORTHO05D006098 6.8e-16 88.2 176 30.1
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 7.0e-13 78.2 38 86.8
Rhsim03G0261000 Rhododendron simsii HOM05D005031 ORTHO05D006098 6.6e-11 71.6 93 43.0
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 9.5e-10 67.8 175 28.0
Sp4g02835 Schrenkiella parvula HOM05D005031 ORTHO05D006098 2.2e-06 56.6 154 30.5
MELO3C033061.2 Cucumis melo HOM05D005031 ORTHO05D006098 4.9e-06 55.5 28 82.1
CARHR184590 Cardamine hirsuta HOM05D005031 ORTHO05D006098 6.4e-06 55.1 48 56.2


User provided reference genes

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