Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G1877 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.1e-128 463.4 250 100.0
FAN16G2350 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.3e-124 449.9 250 96.8
FvH4_3g39530 Fragaria vesca HOM05D007204 ORTHO05D008593 1.0e-121 440.3 250 95.2
RcHm_v2.0_Chr5g0071301 Rosa chinensis HOM05D007204 ORTHO05D008593 1.7e-108 396.4 250 86.4
FAN11G3207 Fragaria x ananassa HOM05D007204 ORTHO05D008593 9.5e-104 380.6 216 94.9
FAN21G2638 Fragaria x ananassa HOM05D007204 ORTHO05D008593 4.4e-93 345.1 219 86.8
Prupe.6G050500 Prunus persica HOM05D007204 ORTHO05D008593 2.6e-85 319.3 245 71.8
MD11G1063300 Malus domestica HOM05D007204 ORTHO05D008593 4.3e-72 275.4 251 64.1
Dinv09663 Davidia involucrata HOM05D007204 ORTHO05D008593 3.4e-61 239.2 241 56.8
GSVIVG01024663001 Vitis vinifera HOM05D007204 ORTHO05D008593 4.5e-61 238.8 241 56.8
Duzib168G0028 Durio zibethinus HOM05D007204 ORTHO05D008593 6.5e-60 235.0 239 54.4
QL01p040026 Quercus lobata HOM05D007204 ORTHO05D008593 6.0e-58 228.4 238 55.0
Thecc.09G355900 Theobroma cacao HOM05D007204 ORTHO05D008593 3.0e-57 226.1 245 51.8
Atru.chr3.4133 Acer truncatum HOM05D007204 ORTHO05D008593 5.1e-57 225.3 241 54.4
TWI31G1133 Tripterygium wilfordii HOM05D007204 ORTHO05D008593 2.1e-55 219.9 245 50.6
COL.COLO4_11129 Corchorus olitorius HOM05D007204 ORTHO05D008593 2.4e-54 216.5 240 49.6
CiPaw.14G055100 Carya illinoinensis HOM05D007204 ORTHO05D008593 1.5e-53 213.8 245 49.8
Potri.001G281500 Populus trichocarpa HOM05D007204 ORTHO05D008593 3.4e-53 212.6 241 51.0
Cc01_g14730 Coffea canephora HOM05D007204 ORTHO05D008593 2.9e-52 209.5 241 49.8
Gorai.003G149500 Gossypium raimondii HOM05D007204 ORTHO05D008593 1.9e-51 206.8 245 48.2
Manes.17G034600 Manihot esculenta HOM05D007204 ORTHO05D008593 7.2e-51 204.9 241 49.4
Ciclev10029273m.g Citrus clementina HOM05D007204 ORTHO05D008593 9.3e-51 204.5 210 53.8
Lj6g0005890 Lotus japonicus HOM05D007204 ORTHO05D008593 9.3e-51 204.5 238 49.6
PGR102G0940 Punica granatum HOM05D007204 ORTHO05D008593 9.3e-51 204.5 241 48.5
Gohir.D03G142400 Gossypium hirsutum HOM05D007204 ORTHO05D008593 1.2e-50 204.1 245 47.3
Actinidia32616 Actinidia chinensis HOM05D007204 ORTHO05D008593 2.7e-50 203.0 245 48.2
TPR.G32886 Trifolium pratense HOM05D007204 ORTHO05D008593 1.0e-49 201.1 242 47.5
VMungo0540G1924 Vigna mungo HOM05D007204 ORTHO05D008593 1.3e-49 200.7 233 51.1
PSO339G1295 Papaver somniferum HOM05D007204 ORTHO05D008593 1.8e-49 200.3 241 49.8
PSO801G0770 Papaver somniferum HOM05D007204 ORTHO05D008593 3.0e-49 199.5 241 50.2
CANSAT54G2573 Cannabis sativa HOM05D007204 ORTHO05D008593 8.7e-49 198.0 213 53.1
Sed0020276 Sechium edule HOM05D007204 ORTHO05D008593 8.7e-49 198.0 241 48.1
Phvul.006G073000 Phaseolus vulgaris HOM05D007204 ORTHO05D008593 1.1e-48 197.6 241 49.4
Nn2g10986 Nelumbo nucifera HOM05D007204 ORTHO05D008593 5.7e-48 195.3 241 46.9
CsaV3_1G015330 Cucumis sativus L. HOM05D007204 ORTHO05D008593 9.7e-48 194.5 246 49.6
MELO3C026086.2 Cucumis melo HOM05D007204 ORTHO05D008593 1.3e-47 194.1 246 48.8
Psat5g153840 Pisum sativum HOM05D007204 ORTHO05D008593 1.5e-45 187.2 242 45.5
Cfa011760 Carpinus fangiana HOM05D007204 ORTHO05D008593 2.6e-45 186.4 188 58.5
CARHR006750 Cardamine hirsuta HOM05D007204 ORTHO05D008593 1.3e-44 184.1 242 47.5
HanXRQChr08g0229231 Helianthus annuus HOM05D007204 ORTHO05D008593 1.7e-44 183.7 241 46.1
Nitab4.5_0007880g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 2.9e-44 183.0 241 47.3
AL1G17180 Arabidopsis lyrata HOM05D007204 ORTHO05D008593 6.5e-44 181.8 242 45.5
Carub.0001s0635 Capsella rubella HOM05D007204 ORTHO05D008593 6.5e-44 181.8 241 45.2
Eucgr.B03990 Eucalyptus grandis HOM05D007204 ORTHO05D008593 1.1e-43 181.0 241 45.6
TAR623G0341 Trochodendron aralioides HOM05D007204 ORTHO05D008593 1.1e-43 181.0 201 52.7
arahy.Tifrunner.gnm1.ann1.IVNQ32 Arachis hypogaea HOM05D007204 ORTHO05D008593 1.4e-43 180.6 269 44.2
arahy.Tifrunner.gnm1.ann1.QCA2Y7 Arachis hypogaea HOM05D007204 ORTHO05D008593 1.4e-43 180.6 258 45.3
Rhsim13G0065200 Rhododendron simsii HOM05D007204 ORTHO05D008593 4.2e-43 179.1 306 40.2
Sc21g0005220 Simmondsia chinensis HOM05D007204 ORTHO05D008593 5.5e-43 178.7 226 46.9
AT1G07060 Arabidopsis thaliana HOM05D007204 ORTHO05D008593 2.7e-42 176.4 241 45.2
Hma1.2p1_0841F.1_g226930 Hydrangea macrophylla HOM05D007204 ORTHO05D008593 3.6e-42 176.0 180 55.6
Sp1g05780 Schrenkiella parvula HOM05D007204 ORTHO05D008593 4.6e-42 175.6 241 43.6
Peaxi162Scf00390g00079 Petunia axillaris HOM05D007204 ORTHO05D008593 1.8e-41 173.7 249 45.4
Aa31LG1G8110 Aethionema arabicum HOM05D007204 ORTHO05D008593 3.0e-41 172.9 242 43.4
THA.LOC104800761 Tarenaya hassleriana HOM05D007204 ORTHO05D008593 3.0e-41 172.9 243 43.6
A10p05600 Brassica napus HOM05D007204 ORTHO05D008593 3.9e-41 172.6 241 44.8
ClCG03G000270 Citrullus lanatus HOM05D007204 ORTHO05D008593 3.9e-41 172.6 246 45.5
AUR62009682 Chenopodium quinoa HOM05D007204 ORTHO05D008593 6.7e-41 171.8 228 45.6
BcaC05g24670 Brassica carinata HOM05D007204 ORTHO05D008593 8.8e-41 171.4 241 44.4
BcaNung06767 Brassica carinata HOM05D007204 ORTHO05D008593 1.5e-40 170.6 241 44.8
C05p05140 Brassica napus HOM05D007204 ORTHO05D008593 2.6e-40 169.9 241 44.0
PGSC0003DMG400030457 Solanum tuberosum HOM05D007204 ORTHO05D008593 3.3e-40 169.5 241 46.1
MBI03_g33621_MAGBIO Magnolia biondii HOM05D007204 ORTHO05D008593 1.3e-39 167.5 305 38.0
Migut.N00766 Erythranthe guttata HOM05D007204 ORTHO05D008593 2.2e-39 166.8 246 43.9
Lsat_1_v5_gn_9_18401 Lactuca sativa HOM05D007204 ORTHO05D008593 8.2e-39 164.9 241 43.2
DCAR_012274 Daucus carota HOM05D007204 ORTHO05D008593 1.4e-38 164.1 188 48.9
BraA10t42821Z Brassica rapa HOM05D007204 ORTHO05D008593 1.5e-37 160.6 255 42.0
Gohir.A03G026100 Gossypium hirsutum HOM05D007204 ORTHO05D008593 2.0e-37 160.2 188 49.5
Aqoxy2G00798 Aquilegia oxysepala HOM05D007204 ORTHO05D008593 7.7e-37 158.3 188 48.4
Thhalv10009490m.g Eutrema salsugineum HOM05D007204 ORTHO05D008593 1.3e-36 157.5 212 46.2
SGA_v2.0_scaffold146G36125 Striga asiatica HOM05D007204 ORTHO05D008593 2.2e-36 156.8 239 41.4
Oeu034090.2 Olea europaea HOM05D007204 ORTHO05D008593 2.9e-36 156.4 238 42.9
BcaNung06763 Brassica carinata HOM05D007204 ORTHO05D008593 3.8e-36 156.0 247 42.5
BolC5t29286H Brassica oleracea HOM05D007204 ORTHO05D008593 3.8e-36 156.0 255 41.2
AUR62001886 Chenopodium quinoa HOM05D007204 ORTHO05D008593 6.5e-36 155.2 265 40.8
Medtr3g031680 Medicago truncatula HOM05D007204 ORTHO05D008593 2.1e-34 150.2 188 45.7
Medtr3g031720 Medicago truncatula HOM05D007204 ORTHO05D008593 3.6e-34 149.4 191 46.1
MSTRG.9779 Avicennia marina HOM05D007204 ORTHO05D008593 4.7e-34 149.1 246 39.0
HPP92_019711 Vanilla planifolia HOM05D000883 ORTHO05D002942 3.0e-33 146.4 241 39.0
ECA247G3086 Erigeron canadensis HOM05D007204 ORTHO05D008593 2.0e-32 143.7 346 31.5
Lj2A1091T48 Lonicera japonica HOM05D007204 ORTHO05D008593 9.7e-32 141.4 118 61.0
Nitab4.5_0009741g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 1.7e-31 140.6 300 36.7
Sabra16G0175100 Salix brachista HOM05D007204 ORTHO05D008593 6.3e-31 138.7 240 39.6
Lalb_Chr15g0083171 Lupinus albus HOM05D007204 ORTHO05D008593 1.4e-30 137.5 137 56.2
Glyma.18G058101 Glycine max HOM05D007204 ORTHO05D008593 2.4e-30 136.7 125 58.4
BcaC05g24674 Brassica carinata HOM05D007204 ORTHO05D008593 3.5e-29 132.9 201 43.8
Hund18956 Selenicereus undatus HOM05D007204 ORTHO05D008593 3.8e-28 129.4 189 41.8
SalBow2G2431 Salvia bowleyana HOM05D007204 ORTHO05D008593 6.5e-28 128.6 188 44.7
Zm00001eb195020 Zea mays HOM05D007204 ORTHO05D008593 3.0e-25 119.8 246 37.0
vmacro02927 Vaccinium macrocarpon HOM05D007204 ORTHO05D008593 1.5e-24 117.5 195 43.1
Os12g0106100 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 5.7e-24 115.5 232 36.2
Solyc06g082320.4 Solanum lycopersicum HOM05D007204 ORTHO05D008593 9.7e-24 114.8 132 51.5
Os11g0106800 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 8.2e-23 111.7 232 35.8
unitig_94.g28350 Utricularia gibba HOM05D007204 ORTHO05D008593 2.0e-21 107.1 232 34.5
SGA_v2.0_scaffold120G32948 Striga asiatica HOM05D007204 ORTHO05D008593 2.2e-20 103.6 316 29.7
ATR0174G030 Amborella trichopoda HOM05D007204 ORTHO05D008593 3.8e-20 102.8 190 38.4
CSS0017241 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 7.2e-19 98.6 137 42.3
CSS0041349 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 7.2e-19 98.6 137 42.3
Sopen06g033710 Solanum pennellii HOM05D007204 ORTHO05D008593 5.7e-16 89.0 152 39.5
SEGI_02179 Sequoiadendron giganteum HOM05D056589 ORTHO05D008593 2.2e-15 87.0 234 28.6
TPR.G22099 Trifolium pratense HOM05D007204 ORTHO05D008593 1.0e-09 68.2 130 36.2
Zm00001eb025660 Zea mays HOM05D007204 ORTHO05D008593 3.1e-06 56.6 53 54.7
SMO358G0161 Selaginella moellendorffii HOM05D007204 ORTHO05D008593 4.1e-06 56.2 134 32.8


User provided reference genes

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