Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2489.5 1240 100.0
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2437.9 1240 98.1
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2427.9 1240 97.8
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2427.5 1240 97.7
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 2426.0 1240 97.7
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 2342.4 1256 93.2
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 2226.8 1260 88.1
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 2214.5 1260 87.5
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 2194.5 1260 86.9
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 2046.9 1263 80.8
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 2038.8 1258 79.6
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 2028.1 1258 80.2
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 2028.1 1256 79.9
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 2025.8 1262 79.6
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 2023.4 1260 80.6
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 2022.7 1260 80.0
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2014.2 1258 79.2
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2013.0 1258 79.1
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 2010.0 1260 79.3
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 2007.6 1267 78.8
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 1999.6 1258 79.2
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1997.2 1260 77.9
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1992.2 1300 76.2
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1988.4 1256 78.1
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1984.1 1267 77.6
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1983.8 1256 77.9
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 1983.0 1262 77.9
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1981.8 1252 78.6
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1973.7 1259 77.5
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1970.7 1252 78.1
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1959.9 1258 77.5
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1950.6 1254 77.4
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1949.5 1257 76.6
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1943.3 1254 76.7
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1942.9 1250 78.4
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 1941.0 1254 77.1
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1931.8 1256 76.4
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1931.0 1257 76.2
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1923.3 1518 66.9
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1921.7 1258 75.7
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1921.0 1257 75.6
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1918.3 1257 75.3
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1916.7 1273 74.9
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1916.4 1263 75.1
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1915.2 1282 74.8
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1910.6 1320 73.3
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1908.6 1263 74.9
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1906.0 1283 74.0
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1904.0 1258 73.8
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1892.1 1259 75.5
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1890.2 1258 74.8
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1890.2 1258 74.7
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1889.8 1258 74.2
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1889.0 1257 74.9
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1887.5 1259 74.9
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1884.8 1260 74.3
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1882.5 1258 74.6
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1881.7 1290 72.6
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1879.0 1258 73.9
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1876.3 1256 75.0
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1872.4 1258 74.3
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1872.1 1258 73.6
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1872.1 1243 74.6
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1871.3 1269 73.2
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1869.4 1261 73.5
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1869.0 1261 73.5
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1867.0 1261 73.6
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1866.7 1259 73.7
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1866.3 1260 73.5
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1865.1 1264 73.3
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1864.7 1262 73.5
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1862.8 1267 73.2
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1862.0 1257 74.1
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1858.6 1259 72.5
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1855.1 1260 73.4
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1853.6 1258 72.7
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1850.9 1259 73.1
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1850.5 1258 72.7
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1846.2 1260 73.0
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1843.2 1260 73.0
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1839.3 1260 72.9
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1835.8 1258 72.5
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1835.1 1260 72.6
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1830.5 1264 72.6
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1818.1 1162 77.9
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1817.4 1242 73.6
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1807.7 1273 72.6
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1784.2 1157 76.2
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1775.8 1322 68.4
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1764.6 1229 71.8
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1733.8 1257 69.4
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1721.4 1259 67.8
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1622.1 1096 73.5
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1615.1 1035 77.6
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1603.6 1078 73.7
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1601.6 1219 65.5
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1591.2 999 79.2
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1586.2 1254 63.3
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1562.4 1050 75.0
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1518.4 1062 71.6
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1497.6 1030 72.6
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1453.7 1096 68.9
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1439.5 925 77.7
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1418.7 1014 70.3
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1381.3 856 80.3
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1280.8 1393 49.6
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1174.8 1258 52.2
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1169.8 1356 47.4
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1152.5 769 74.8
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1111.7 746 72.8
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 0.0e+00 1075.8 859 64.3
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 2.7e-300 1035.8 1011 55.9
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 3.1e-280 969.1 1147 45.9
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 3.8e-270 935.6 592 78.7
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.5e-250 870.5 536 80.0
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 4.5e-247 859.0 847 55.4
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 2.3e-206 723.8 1434 33.8
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 5.1e-206 722.6 446 79.4
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 1.9e-189 667.5 454 74.0
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 6.9e-155 552.7 489 58.5
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 5.0e-153 546.6 306 85.3
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 5.0e-121 440.3 316 67.7
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 2.4e-99 368.2 205 85.9
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.4e-93 347.8 316 59.5
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 2.4e-91 341.7 372 49.2
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.4e-86 325.1 194 78.9
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 1.1e-83 316.2 256 61.3
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 3.1e-78 298.1 165 86.7
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 1.5e-77 295.8 159 90.6
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 3.8e-76 291.2 209 70.8
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 1.2e-74 286.2 205 70.7
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.5e-72 279.3 260 56.9
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 1.5e-72 279.3 260 56.9
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 1.5e-72 279.3 260 56.9
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.5e-72 279.3 262 54.6
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.6e-69 268.5 432 37.5
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 7.1e-67 260.4 152 80.3
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 4.6e-66 257.7 208 63.9
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 8.7e-65 253.4 180 66.1
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 1.7e-60 239.2 157 75.8
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.9e-56 225.7 160 73.1
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 4.6e-50 204.5 132 75.0
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.3e-49 203.0 152 65.1
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.3e-49 203.0 132 68.9
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 4.3e-48 198.0 109 81.7
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 8.2e-47 193.7 109 80.7
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.5e-45 189.5 109 79.8
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.5e-45 189.5 109 79.8
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 2.6e-45 188.7 163 58.3
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.4e-43 183.0 109 78.0
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 6.7e-41 174.1 126 67.5
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 9.7e-40 170.2 111 74.8
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.1e-38 165.2 98 79.6
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 4.1e-38 164.9 121 70.2
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 1.3e-36 159.8 102 76.5
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.9e-35 156.0 98 79.6
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 7.4e-32 144.1 81 80.2
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 1.3e-31 143.3 124 61.3
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.0e-29 136.0 87 70.1
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.1e-27 130.2 87 73.6
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 4.4e-24 118.2 65 80.0
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 1.4e-22 113.2 98 62.2
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 1.7e-20 106.3 583 24.7
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 8.5e-20 104.0 107 45.8
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.5e-19 102.4 62 77.4
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 1.8e-17 96.3 67 68.7
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 2.3e-17 95.9 57 78.9
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.4e-16 92.0 52 80.8
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 7.5e-16 90.9 81 56.8
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 7.7e-13 80.9 99 45.5
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 2.5e-11 75.9 100 42.0
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.6e-10 73.2 69 49.3
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 1.5e-08 66.6 374 22.7
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 1.7e-07 63.2 52 61.5
ATR0693G070 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.8e-06 59.7 43 67.4


User provided reference genes

Program Settings