Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G1664 Fragaria x ananassa HOM05D006179 ORTHO05D008370 4.4e-161 571.2 288 100.0
FvH4_3g27810 Fragaria vesca HOM05D006179 ORTHO05D008370 1.3e-152 543.1 288 95.8
FAN21G1036 Fragaria x ananassa HOM05D006179 ORTHO05D008370 2.8e-139 498.8 305 87.2
FAN11G2659 Fragaria x ananassa HOM05D000059 ORTHO05D008370 2.9e-136 488.8 261 95.8
RcHm_v2.0_Chr5g0050451 Rosa chinensis HOM05D006179 ORTHO05D008370 4.1e-135 485.0 302 85.4
Prupe.4G263800 Prunus persica HOM05D006179 ORTHO05D008370 4.7e-115 418.3 304 75.0
MD11G1184200 Malus domestica HOM05D006179 ORTHO05D008370 1.4e-114 416.8 282 77.0
Cfa009884 Carpinus fangiana HOM05D006179 ORTHO05D008370 1.4e-106 390.2 301 70.4
CANSAT54G1770 Cannabis sativa HOM05D006179 ORTHO05D008370 1.7e-104 383.3 298 67.8
CiPaw.14G111900 Carya illinoinensis HOM05D006179 ORTHO05D008370 1.1e-103 380.6 300 69.7
QL01p016926 Quercus lobata HOM05D006179 ORTHO05D008370 1.9e-103 379.8 298 69.8
GSVIVG01037292001 Vitis vinifera HOM05D006179 ORTHO05D008370 4.2e-103 378.6 299 68.9
Atru.chr3.2957 Acer truncatum HOM05D006179 ORTHO05D008370 9.3e-103 377.5 298 69.1
CSS0020940 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 1.6e-102 376.7 300 68.3
Potri.009G069300 Populus trichocarpa HOM05D006179 ORTHO05D008370 1.6e-102 376.7 306 68.6
Gohir.A07G121100 Gossypium hirsutum HOM05D006179 ORTHO05D008370 1.0e-101 374.0 227 78.4
Hma1.2p1_0470F.1_g159226 Hydrangea macrophylla HOM05D006179 ORTHO05D008370 1.0e-101 374.0 280 70.7
Gohir.D07G125300 Gossypium hirsutum HOM05D006179 ORTHO05D008370 1.3e-101 373.6 227 78.4
Lalb_Chr04g0249261 Lupinus albus HOM05D006179 ORTHO05D008370 2.3e-101 372.9 294 66.7
Nitab4.5_0001290g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 2.3e-101 372.9 225 80.0
SGA_v2.0_scaffold8G04541 Striga asiatica HOM05D006179 ORTHO05D008370 2.3e-101 372.9 225 81.3
PGSC0003DMG401004716 Solanum tuberosum HOM05D006179 ORTHO05D008370 6.6e-101 371.3 225 80.9
LjContig00564g0004002 Lotus japonicus HOM05D006179 ORTHO05D008370 1.5e-100 370.2 300 65.7
COL.COLO4_24491 Corchorus olitorius HOM05D006179 ORTHO05D008370 1.9e-100 369.8 303 64.7
TWI79G0794 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 1.9e-100 369.8 290 69.0
Cc00_g17410 Coffea canephora HOM05D006179 ORTHO05D008370 4.3e-100 368.6 228 79.8
Sed0005347 Sechium edule HOM05D006179 ORTHO05D008370 4.3e-100 368.6 294 66.7
Hund21973 Selenicereus undatus HOM05D006179 ORTHO05D008370 9.6e-100 367.5 227 76.7
TPR.G16411 Trifolium pratense HOM05D006179 ORTHO05D008370 2.1e-99 366.3 294 66.0
Oeu061700.1 Olea europaea HOM05D006179 ORTHO05D008370 2.8e-99 365.9 248 74.2
ClCG02G022800 Citrullus lanatus HOM05D006179 ORTHO05D008370 4.8e-99 365.2 307 65.5
Migut.D00669 Erythranthe guttata HOM05D006179 ORTHO05D008370 1.4e-98 363.6 266 70.3
Sopen12g034430 Solanum pennellii HOM05D006179 ORTHO05D008370 1.8e-98 363.2 304 66.4
TAR623G0610 Trochodendron aralioides HOM05D006179 ORTHO05D008370 1.8e-98 363.2 301 66.8
Solyc12g099800.2 Solanum lycopersicum HOM05D006179 ORTHO05D008370 3.1e-98 362.5 304 65.5
TWI31G1173 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 5.3e-98 361.7 300 67.0
Aqoxy1G00395 Aquilegia oxysepala HOM05D006179 ORTHO05D008370 6.9e-98 361.3 287 64.8
Lj2C622G16 Lonicera japonica HOM05D006179 ORTHO05D008370 6.9e-98 361.3 266 68.8
PSO384G2846 Papaver somniferum HOM05D006179 ORTHO05D008370 6.9e-98 361.3 300 64.0
SalBow6G4024 Salvia bowleyana HOM05D006179 ORTHO05D008370 6.9e-98 361.3 221 79.2
Glyma.02G279000 Glycine max HOM05D006179 ORTHO05D008370 9.0e-98 360.9 287 67.2
Gorai.001G135100 Gossypium raimondii HOM05D006179 ORTHO05D008370 9.0e-98 360.9 216 79.6
arahy.Tifrunner.gnm1.ann1.66DN5N Arachis hypogaea HOM05D006179 ORTHO05D008370 1.2e-97 360.5 225 76.0
PGR119G2402 Punica granatum HOM05D006179 ORTHO05D008370 1.2e-97 360.5 307 66.1
vmacro14276 Vaccinium macrocarpon HOM05D006179 ORTHO05D008370 2.0e-97 359.8 302 66.2
Glyma.14G035700 Glycine max HOM05D006179 ORTHO05D008370 2.6e-97 359.4 296 67.2
Rhsim01G0195300 Rhododendron simsii HOM05D006179 ORTHO05D008370 2.6e-97 359.4 303 65.0
Nn2g14782 Nelumbo nucifera HOM05D006179 ORTHO05D008370 3.4e-97 359.0 280 68.6
HanXRQChr13g0390131 Helianthus annuus HOM05D006179 ORTHO05D008370 7.6e-97 357.8 279 64.9
Psat2g020720 Pisum sativum HOM05D006179 ORTHO05D008370 9.9e-97 357.5 293 64.2
Medtr5g089330 Medicago truncatula HOM05D006179 ORTHO05D008370 1.7e-96 356.7 295 64.1
Haze_23248 Corylus avellana HOM05D006179 ORTHO05D008370 2.2e-96 356.3 261 69.3
EL10Ac4g10106 Beta vulgaris HOM05D006179 ORTHO05D008370 2.9e-96 355.9 220 78.2
PSO339G0647 Papaver somniferum HOM05D006179 ORTHO05D008370 2.9e-96 355.9 282 66.3
arahy.Tifrunner.gnm1.ann1.0RM1GA Arachis hypogaea HOM05D006179 ORTHO05D008370 4.9e-96 355.1 231 74.5
Ca_06199_v3 Cicer arietinum L. HOM05D006179 ORTHO05D008370 1.9e-95 353.2 230 73.0
Thecc.09G246900 Theobroma cacao HOM05D006179 ORTHO05D008370 4.2e-95 352.1 339 57.8
AUR62000204 Chenopodium quinoa HOM05D006179 ORTHO05D008370 7.1e-95 351.3 225 76.0
VMungo0647G1137 Vigna mungo HOM05D006179 ORTHO05D008370 7.1e-95 351.3 228 75.0
CAN.G1305.17 Capsicum annuum HOM05D006179 ORTHO05D008370 1.2e-94 350.5 259 69.9
Phvul.008G201800 Phaseolus vulgaris HOM05D006179 ORTHO05D008370 1.6e-94 350.1 296 64.5
unitig_62.g23875 Utricularia gibba HOM05D006179 ORTHO05D008370 2.1e-94 349.7 222 77.0
Sabra09G0052200 Salix brachista HOM05D006179 ORTHO05D008370 1.0e-93 347.4 344 58.7
Sc16g0011000 Simmondsia chinensis HOM05D006179 ORTHO05D008370 1.0e-93 347.4 221 76.5
Ah.04g159740 Amaranthus hybridus HOM05D006179 ORTHO05D008370 3.0e-93 345.9 218 76.6
ATR0621G006 Amborella trichopoda HOM05D006179 ORTHO05D008370 1.5e-92 343.6 231 70.6
CDE02G1620 Ceratophyllum demersum HOM05D006179 ORTHO05D008370 1.9e-92 343.2 222 73.4
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 4.3e-92 342.0 233 71.2
Nn7g36750 Nelumbo nucifera HOM05D006179 ORTHO05D008370 9.6e-92 340.9 222 75.7
Cpa.g.sc157.57 Carica papaya HOM05D006179 ORTHO05D008370 2.1e-91 339.7 281 64.1
Atru.chr3.2952 Acer truncatum HOM05D006179 ORTHO05D008370 3.7e-91 339.0 271 70.5
Peaxi162Scf00272g00828 Petunia axillaris HOM05D006179 ORTHO05D008370 1.1e-90 337.4 294 61.9
Duzib170G0239 Durio zibethinus HOM05D006179 ORTHO05D008370 9.0e-90 334.3 286 65.0
TPR.G16393 Trifolium pratense HOM05D006179 ORTHO05D008370 6.5e-88 328.2 293 60.1
Os07g0687500 Oryza sativa ssp. japonica HOM05D006179 ORTHO05D008370 4.2e-87 325.5 212 71.7
Zm00001eb331180 Zea mays HOM05D006179 ORTHO05D008370 9.3e-87 324.3 262 62.2
Lsat_1_v5_gn_5_65341 Lactuca sativa HOM05D006179 ORTHO05D008370 1.2e-86 323.9 284 61.6
BcaB01g04864 Brassica carinata HOM05D006179 ORTHO05D008370 5.1e-85 318.5 302 58.3
THA.LOC104811194 Tarenaya hassleriana HOM05D006179 ORTHO05D008370 5.1e-85 318.5 294 60.2
Thhalv10014227m.g Eutrema salsugineum HOM05D006179 ORTHO05D008370 2.5e-84 316.2 281 61.2
Aa31LG1G8830 Aethionema arabicum HOM05D006179 ORTHO05D008370 3.3e-84 315.8 226 68.1
A03p09460 Brassica napus HOM05D006179 ORTHO05D008370 1.6e-83 313.5 302 56.3
BraA03t10264Z Brassica rapa HOM05D006179 ORTHO05D008370 1.6e-83 313.5 302 56.3
DCAR_024400 Daucus carota HOM05D006179 ORTHO05D008370 4.8e-83 312.0 222 69.8
CARHR193590 Cardamine hirsuta HOM05D006179 ORTHO05D008370 6.3e-83 311.6 302 57.9
C03p11040 Brassica napus HOM05D006179 ORTHO05D008370 6.9e-82 308.1 304 56.6
BolC3t13573H Brassica oleracea HOM05D006179 ORTHO05D008370 9.0e-82 307.8 304 56.6
Sp6g25040 Schrenkiella parvula HOM05D006179 ORTHO05D008370 1.2e-81 307.4 301 58.1
AL6G30860 Arabidopsis lyrata HOM05D006179 ORTHO05D008370 2.2e-80 303.1 303 56.1
MELO3C014557.2 Cucumis melo HOM05D006179 ORTHO05D008370 1.1e-79 300.8 226 68.6
A02p05510 Brassica napus HOM05D006179 ORTHO05D008370 4.2e-79 298.9 300 55.3
HPP92_028459 Vanilla planifolia HOM05D006179 ORTHO05D008370 5.5e-79 298.5 183 76.5
Carub.0006s1771 Capsella rubella HOM05D006179 ORTHO05D008370 7.2e-79 298.1 233 64.4
BcaC03g13669 Brassica carinata HOM05D006179 ORTHO05D008370 1.2e-78 297.4 299 55.5
AT5G19370 Arabidopsis thaliana HOM05D006179 ORTHO05D008370 1.6e-78 297.0 304 54.6
Nitab4.5_0002310g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 2.7e-78 296.2 214 71.0
Mapoly0003s0043 Marchantia polymorpha HOM05D006179 ORTHO05D008370 6.7e-77 291.6 215 62.3
BraA02t05502Z Brassica rapa HOM05D006179 ORTHO05D008370 5.7e-76 288.5 324 50.6
SMO145G0007 Selaginella moellendorffii HOM05D006179 ORTHO05D008370 9.7e-76 287.7 227 62.6
CsaV3_6G038930 Cucumis sativus L. HOM05D006179 ORTHO05D008370 6.3e-75 285.0 227 67.4
Pp3c3_13280 Physcomitrium patens HOM05D006179 ORTHO05D008370 6.3e-75 285.0 221 61.5
BNapus_Darmor_BZH_scaffold_38p02550 Brassica napus HOM05D006179 ORTHO05D008370 8.2e-75 284.6 288 55.2
AagrBONN_evm.TU.Sc2ySwM_117.3174 Anthoceros agrestis HOM05D006179 ORTHO05D008370 1.8e-69 266.9 231 57.6
BcaB01g05143 Brassica carinata HOM05D006179 ORTHO05D008370 3.9e-69 265.8 179 70.4
Eucgr.J00687 Eucalyptus grandis HOM05D006179 ORTHO05D008370 1.7e-67 260.4 151 81.5
Ciclev10017644m.g Citrus clementina HOM05D006179 ORTHO05D008370 2.8e-67 259.6 151 82.1
CBR_g54969 Chara braunii HOM05D006179 ORTHO05D008370 1.1e-66 257.7 219 58.4
Dinv36157 Davidia involucrata HOM05D006179 ORTHO05D008370 9.4e-63 244.6 224 67.0
ECA233G4787 Erigeron canadensis HOM05D006179 ORTHO05D008370 9.7e-60 234.6 141 77.3
Manes.02G138400 Manihot esculenta HOM05D006179 ORTHO05D008370 1.2e-57 227.6 224 62.1
Peaxi162Scf00174g00223 Petunia axillaris HOM05D006179 ORTHO05D008370 8.5e-56 221.5 152 72.4
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 8.5e-56 221.5 150 72.7
SEGI_16296 Sequoiadendron giganteum HOM05D006179 ORTHO05D008370 1.4e-53 214.2 138 72.5
AUR62040469 Chenopodium quinoa HOM05D006179 ORTHO05D008370 3.7e-51 206.1 175 60.6
AUR62037598 Chenopodium quinoa HOM05D006179 ORTHO05D007344 2.6e-44 183.3 142 66.9
AUR62042212 Chenopodium quinoa HOM05D006179 ORTHO05D008370 4.0e-37 159.5 137 62.0
Cre07.g350400 Chlamydomonas reinhardtii HOM05D006179 ORTHO05D008370 7.5e-36 155.2 186 37.6
MCO13G336 Micromonas commoda HOM05D006179 ORTHO05D008370 2.8e-30 136.7 198 37.9
SalBow6G2129 Salvia bowleyana HOM05D006179 ORTHO05D353266 7.5e-28 128.6 153 52.9
CSS0040024 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 6.6e-24 115.5 68 80.9
CSS0040434 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 1.4e-18 97.8 137 43.8
QL02p019212 Quercus lobata HOM05D006179 ORTHO05D008370 1.6e-09 67.8 36 80.6
MCO16G521 Micromonas commoda HOM05D005637 ORTHO05D006983 5.6e-07 59.3 100 39.0
TWI38G2207 Tripterygium wilfordii HOM05D004980 ORTHO05D006505 5.6e-07 59.3 101 33.7
Haze_26617 Corylus avellana HOM05D006179 ORTHO05D164269 2.1e-06 57.4 95 35.8
Hund02632 Selenicereus undatus HOM05D005637 ORTHO05D006983 4.7e-06 56.2 122 32.8


User provided reference genes

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