Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G1544 Fragaria x ananassa HOM05D000147 ORTHO05D005950 7.0e-156 553.9 277 100.0
FAN21G3947 Fragaria x ananassa HOM05D000147 ORTHO05D005950 3.0e-127 458.8 238 97.1
FvH4_3g01380 Fragaria vesca HOM05D000147 ORTHO05D005950 1.7e-125 453.0 253 92.1
RcHm_v2.0_Chr5g0002011 Rosa chinensis HOM05D000147 ORTHO05D005950 7.8e-107 391.0 255 80.0
FvH4_6g05890 Fragaria vesca HOM05D000147 ORTHO05D005950 3.9e-98 362.1 240 77.9
FAN05G0232 Fragaria x ananassa HOM05D000147 ORTHO05D005950 7.3e-97 357.8 240 76.7
FAN05G2764 Fragaria x ananassa HOM05D000070 ORTHO05D005950 8.9e-95 350.9 240 75.8
FAN09G4350 Fragaria x ananassa HOM05D000001 ORTHO05D005950 9.3e-84 314.3 297 59.3
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 1.2e-78 297.4 189 79.4
Prupe.4G015000 Prunus persica HOM05D000147 ORTHO05D005950 1.2e-75 287.3 255 63.1
MD10G1327000 Malus domestica HOM05D000147 ORTHO05D005950 8.7e-66 254.6 262 58.0
Prupe.4G014800 Prunus persica HOM05D000147 ORTHO05D005950 1.3e-64 250.8 275 54.9
Cfa000159 Carpinus fangiana HOM05D000147 ORTHO05D005950 9.3e-60 234.6 254 52.4
QL05p071825 Quercus lobata HOM05D000147 ORTHO05D005950 1.0e-58 231.1 250 52.4
Manes.16G002800 Manihot esculenta HOM05D000147 ORTHO05D005950 4.3e-57 225.7 253 51.8
Haze_06859 Corylus avellana HOM05D000147 ORTHO05D005950 8.2e-56 221.5 254 51.6
Duzib235G0285 Durio zibethinus HOM05D000070 ORTHO05D005950 1.7e-53 213.8 254 50.0
RcHm_v2.0_Chr5g0002051 Rosa chinensis HOM05D000147 ORTHO05D005950 8.5e-53 211.5 141 79.4
FAN14G4662 Fragaria x ananassa HOM05D000147 ORTHO05D005950 4.2e-52 209.1 153 73.9
Thecc.06G228500 Theobroma cacao HOM05D000147 ORTHO05D005950 7.2e-52 208.4 256 50.4
Gohir.A06G151300 Gossypium hirsutum HOM05D000070 ORTHO05D005950 2.1e-51 206.8 253 47.4
CiPaw.09G098300 Carya illinoinensis HOM05D000147 ORTHO05D005950 3.6e-51 206.1 253 48.6
Potri.004G004000 Populus trichocarpa HOM05D000147 ORTHO05D005950 1.4e-50 204.1 256 46.9
CiPaw.10G074700 Carya illinoinensis HOM05D000147 ORTHO05D005950 3.0e-50 203.0 208 50.0
Gohir.D06G157500 Gossypium hirsutum HOM05D000070 ORTHO05D005950 3.9e-50 202.6 257 47.1
Ciclev10014675m.g Citrus clementina HOM05D000147 ORTHO05D005950 8.8e-50 201.4 210 52.4
Duzib160G0363 Durio zibethinus HOM05D002056 ORTHO05D005950 7.4e-49 198.4 251 47.8
Sabra04G0002200 Salix brachista HOM05D000147 ORTHO05D005950 1.7e-48 197.2 257 46.3
CANSAT56G0204 Cannabis sativa HOM05D000070 ORTHO05D005950 2.2e-48 196.8 263 45.6
Gorai.010G184000 Gossypium raimondii HOM05D000147 ORTHO05D005950 2.2e-48 196.8 257 46.7
CSS0044927 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D005950 4.8e-48 195.7 211 52.1
Hma1.2p1_0298F.1_g117450 Hydrangea macrophylla HOM05D000147 ORTHO05D005950 4.1e-47 192.6 242 48.8
Atru.chr10.2285 Acer truncatum HOM05D000147 ORTHO05D005950 5.3e-47 192.2 259 46.3
Actinidia02343 Actinidia chinensis HOM05D000070 ORTHO05D005950 1.3e-45 187.6 243 45.3
TWI38G0618 Tripterygium wilfordii HOM05D000147 ORTHO05D005950 1.3e-45 187.6 208 49.5
Actinidia26885 Actinidia chinensis HOM05D000147 ORTHO05D005950 2.2e-45 186.8 258 45.7
Eucgr.E03984 Eucalyptus grandis HOM05D000147 ORTHO05D005950 1.1e-44 184.5 221 45.7
Rhsim13G0150000 Rhododendron simsii HOM05D000147 ORTHO05D005950 5.5e-44 182.2 212 50.0
TAR627G0320 Trochodendron aralioides HOM05D000147 ORTHO05D005950 1.2e-43 181.0 223 46.6
vmacro03663 Vaccinium macrocarpon HOM05D000147 ORTHO05D005950 1.6e-43 180.6 220 48.6
Nitab4.5_0000005g0030 Nicotiana tabacum HOM05D000070 ORTHO05D005950 4.7e-43 179.1 180 53.3
Nitab4.5_0005882g0020 Nicotiana tabacum HOM05D000147 ORTHO05D005950 6.1e-43 178.7 180 53.3
PGR042G1740 Punica granatum HOM05D000147 ORTHO05D005950 7.9e-43 178.3 185 51.9
TPR.G13001 Trifolium pratense HOM05D000147 ORTHO05D005950 7.9e-43 178.3 181 52.5
GSVIVG01004817001 Vitis vinifera HOM05D000070 ORTHO05D005950 1.0e-42 177.9 252 42.1
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 3.0e-42 176.4 166 58.4
Sed0005764 Sechium edule HOM05D000147 ORTHO05D005950 3.0e-42 176.4 179 48.6
arahy.Tifrunner.gnm1.ann1.D0808P Arachis hypogaea HOM05D000147 ORTHO05D005950 8.8e-42 174.9 194 49.5
Oeu002750.1 Olea europaea HOM05D000070 ORTHO05D005950 8.8e-42 174.9 209 46.4
Lsat_1_v5_gn_7_14900 Lactuca sativa HOM05D000147 ORTHO05D005950 1.5e-41 174.1 237 46.8
Sc24g0000260 Simmondsia chinensis HOM05D000147 ORTHO05D005950 1.5e-41 174.1 167 49.7
Lalb_Chr15g0087801 Lupinus albus HOM05D000147 ORTHO05D005950 2.0e-41 173.7 205 47.8
ClCG01G021650 Citrullus lanatus HOM05D000070 ORTHO05D005950 2.6e-41 173.3 180 49.4
Peaxi162Scf00294g00915 Petunia axillaris HOM05D000147 ORTHO05D005950 2.6e-41 173.3 179 50.3
TAR627G0645 Trochodendron aralioides HOM05D000147 ORTHO05D005950 2.6e-41 173.3 169 55.0
arahy.Tifrunner.gnm1.ann1.0743V5 Arachis hypogaea HOM05D000147 ORTHO05D005950 3.3e-41 172.9 196 48.5
CsaV3_6G048710 Cucumis sativus L. HOM05D000070 ORTHO05D005950 3.3e-41 172.9 198 48.0
Ca_00695_v3 Cicer arietinum L. HOM05D000147 ORTHO05D005950 7.4e-41 171.8 183 48.6
HanXRQChr15g0470791 Helianthus annuus HOM05D000147 ORTHO05D005950 9.7e-41 171.4 180 52.8
Psat1g178560 Pisum sativum HOM05D000147 ORTHO05D005950 6.3e-40 168.7 186 49.5
COL.COLO4_31833 Corchorus olitorius HOM05D000070 ORTHO05D005950 7.0e-39 165.2 143 60.1
Medtr2g024440 Medicago truncatula HOM05D000147 ORTHO05D005950 1.2e-38 164.5 186 50.0
Thhalv10028536m.g Eutrema salsugineum HOM05D000070 ORTHO05D005950 1.6e-38 164.1 252 40.1
Glyma.15G112100 Glycine max HOM05D000147 ORTHO05D005950 2.0e-38 163.7 181 49.2
Solyc02g036330.3 Solanum lycopersicum HOM05D000070 ORTHO05D005950 2.0e-38 163.7 167 51.5
PGSC0003DMG401021461 Solanum tuberosum HOM05D000147 ORTHO05D005950 5.9e-38 162.2 166 50.6
Lj6g0003893 Lotus japonicus HOM05D000147 ORTHO05D005950 7.7e-38 161.8 225 41.8
MBI02_g15375_MAGBIO Magnolia biondii HOM05D000147 ORTHO05D005950 1.0e-37 161.4 164 47.0
SGA_v2.0_scaffold7G03784 Striga asiatica HOM05D000070 ORTHO05D005950 1.0e-37 161.4 266 42.9
Sopen02g011700 Solanum pennellii HOM05D000070 ORTHO05D005950 1.3e-37 161.0 167 50.3
Cc09_g01170 Coffea canephora HOM05D000070 ORTHO05D005950 2.2e-37 160.2 245 42.9
CARHR253340 Cardamine hirsuta HOM05D000147 ORTHO05D005950 8.5e-37 158.3 246 40.7
VMungo0540G1662 Vigna mungo HOM05D000147 ORTHO05D005950 1.1e-36 157.9 215 41.9
CAN.G23.7 Capsicum annuum HOM05D000070 ORTHO05D005950 1.9e-36 157.1 177 47.5
THA.LOC104813427 Tarenaya hassleriana HOM05D000147 ORTHO05D005950 3.2e-36 156.4 238 42.4
Carub.0006s3209 Capsella rubella HOM05D000147 ORTHO05D005950 4.2e-36 156.0 232 42.2
EL10Ac8g20131 Beta vulgaris HOM05D000147 ORTHO05D005950 5.5e-36 155.6 164 47.6
Phvul.006G145500 Phaseolus vulgaris HOM05D000147 ORTHO05D005950 2.7e-35 153.3 181 45.3
AL6G47800 Arabidopsis lyrata HOM05D000070 ORTHO05D005950 4.7e-35 152.5 178 47.8
PSO675G5655 Papaver somniferum HOM05D000147 ORTHO05D005950 4.7e-35 152.5 257 37.4
AUR62012759 Chenopodium quinoa HOM05D000147 ORTHO05D005950 1.8e-34 150.6 195 42.6
Nn1g07278 Nelumbo nucifera HOM05D000147 ORTHO05D005950 1.8e-34 150.6 180 48.3
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 2.3e-34 150.2 181 43.6
AT4G04180 Arabidopsis thaliana HOM05D000147 ORTHO05D005950 2.3e-34 150.2 240 40.0
PSO541G0930 Papaver somniferum HOM05D000147 ORTHO05D005950 3.0e-34 149.8 244 38.1
Hund23430 Selenicereus undatus HOM05D000147 ORTHO05D005950 5.2e-34 149.1 252 38.9
SalBow8G0879 Salvia bowleyana HOM05D000070 ORTHO05D005950 1.2e-33 147.9 280 37.5
AUR62021899 Chenopodium quinoa HOM05D000147 ORTHO05D005950 1.5e-33 147.5 239 37.7
BraA09t38218Z Brassica rapa HOM05D000147 ORTHO05D005950 3.3e-33 146.4 275 36.4
BcaC04g21269 Brassica carinata HOM05D000147 ORTHO05D005950 4.4e-33 146.0 194 42.3
Sp6g04620 Schrenkiella parvula HOM05D000070 ORTHO05D005950 4.4e-33 146.0 248 38.3
A09p26440 Brassica napus HOM05D000147 ORTHO05D005950 1.7e-32 144.1 254 38.2
C09p33620 Brassica napus HOM05D000147 ORTHO05D005950 4.8e-32 142.5 204 40.2
BolC9t56196H Brassica oleracea HOM05D000147 ORTHO05D005950 4.8e-32 142.5 204 40.2
BcaC04g21279 Brassica carinata HOM05D000147 ORTHO05D005950 8.2e-32 141.7 203 39.4
Migut.M01369 Erythranthe guttata HOM05D000147 ORTHO05D005950 8.2e-32 141.7 315 34.3
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 1.1e-31 141.4 242 39.3
MSTRG.7181 Avicennia marina HOM05D000070 ORTHO05D005950 1.1e-31 141.4 232 39.2
DCAR_024984 Daucus carota HOM05D000147 ORTHO05D005950 4.1e-31 139.4 214 42.5
Aqoxy1G02947 Aquilegia oxysepala HOM05D000147 ORTHO05D005950 5.3e-31 139.0 264 36.0
MELO3C007419.2 Cucumis melo HOM05D000147 ORTHO05D005950 9.1e-31 138.3 149 48.3
Lj1C1236T15 Lonicera japonica HOM05D000147 ORTHO05D005950 1.9e-28 130.6 265 34.7
unitig_748.g7944 Utricularia gibba HOM05D000070 ORTHO05D005950 3.2e-28 129.8 179 40.8
BcaB01g01796 Brassica carinata HOM05D000147 ORTHO05D005950 3.6e-27 126.3 251 33.9
ATR1149G150 Amborella trichopoda HOM05D000147 ORTHO05D005950 8.8e-26 121.7 193 38.9
Zm00001eb254090 Zea mays HOM05D000070 ORTHO05D005950 3.4e-25 119.8 154 42.2
Os02g0740300 Oryza sativa ssp. japonica HOM05D000147 ORTHO05D005950 5.7e-25 119.0 207 38.2
ECA236G4610 Erigeron canadensis HOM05D002056 ORTHO05D005950 1.1e-23 114.8 110 52.7
BcaC09g49931 Brassica carinata HOM05D000147 ORTHO05D005950 7.0e-23 112.1 221 37.1
Cpa.g.sc4613.2 Carica papaya HOM05D000147 ORTHO05D005950 2.0e-22 110.5 113 51.3
Glyma.04G157800 Glycine max HOM05D000147 ORTHO05D005950 2.0e-22 110.5 94 59.6
CDE07G0653 Ceratophyllum demersum HOM05D000147 ORTHO05D005950 3.2e-20 103.2 172 37.2
CiPaw.03G125600 Carya illinoinensis HOM05D000147 ORTHO05D005950 3.0e-18 96.7 80 57.5
AUR62015275 Chenopodium quinoa HOM05D000147 ORTHO05D005950 2.6e-17 93.6 112 43.8
Dinv13940 Davidia involucrata HOM05D000147 ORTHO05D005950 1.7e-16 90.9 152 40.8
A01p24870 Brassica napus HOM05D000147 ORTHO05D005950 2.4e-15 87.0 179 34.1
BraA01t02401Z Brassica rapa HOM05D000147 ORTHO05D005950 2.3e-13 80.5 178 34.3
FAN21G3076 Fragaria x ananassa HOM05D001347 ORTHO05D001198 2.3e-10 70.5 95 50.5
Mapoly0087s0007 Marchantia polymorpha HOM05D000147 ORTHO05D005950 2.0e-09 67.4 146 28.1
Pp3c15_4440 Physcomitrium patens HOM05D000147 ORTHO05D005950 2.0e-09 67.4 140 26.4
BolC1t03044H Brassica oleracea HOM05D000147 ORTHO05D005950 3.4e-09 66.6 119 41.2
FAN26G1311 Fragaria x ananassa HOM05D000147 ORTHO05D005950 5.7e-09 65.9 38 71.1
MD10G1327200 Malus domestica HOM05D000147 ORTHO05D247472 1.4e-07 61.2 187 33.2
HPP92_018027 Vanilla planifolia HOM05D000147 ORTHO05D005950 1.4e-07 61.2 55 47.3
C01p31100 Brassica napus HOM05D000147 ORTHO05D005950 2.0e-06 57.4 219 26.9
FAN25G2248 Fragaria x ananassa HOM05D001347 ORTHO05D009146 4.6e-06 56.2 53 58.5


User provided reference genes

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