Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G1511 Fragaria x ananassa HOM05D007887 ORTHO05D009725 1.7e-48 195.7 99 100.0
FAN16G3357 Fragaria x ananassa HOM05D007887 ORTHO05D009725 1.2e-46 189.5 99 99.0
FvH4_3g33040 Fragaria vesca HOM05D007887 ORTHO05D009725 4.4e-44 181.0 99 94.9
FAN11G2401 Fragaria x ananassa HOM05D007887 ORTHO05D009725 2.4e-42 175.3 99 92.9
RcHm_v2.0_Chr5g0060411 Rosa chinensis HOM05D007887 ORTHO05D009725 1.3e-40 169.5 99 89.9
Prupe.6G095800 Prunus persica HOM05D007887 ORTHO05D009725 1.7e-24 115.9 102 68.6
MD11G1131400 Malus domestica HOM05D007887 ORTHO05D009725 3.3e-23 111.7 103 65.0
MD03G1112500 Malus domestica HOM05D007887 ORTHO05D009725 7.3e-23 110.5 101 67.3
Manes.04G024800 Manihot esculenta HOM05D007887 ORTHO05D009725 5.8e-20 100.9 102 62.7
CSS0010599 Camellia sinensis var. sinensis HOM05D007887 ORTHO05D009725 7.5e-20 100.5 102 60.8
Thecc.09G259300 Theobroma cacao HOM05D007887 ORTHO05D009725 9.8e-20 100.1 102 62.7
CSS0013187 Camellia sinensis var. sinensis HOM05D007887 ORTHO05D009725 1.3e-19 99.8 102 60.8
Manes.11G141900 Manihot esculenta HOM05D007887 ORTHO05D009725 1.3e-19 99.8 99 60.6
Haze_23901 Corylus avellana HOM05D007887 ORTHO05D009725 4.9e-19 97.8 101 57.4
CiPaw.13G108000 Carya illinoinensis HOM05D007887 ORTHO05D009725 5.4e-18 94.4 102 59.8
Cfa011356 Carpinus fangiana HOM05D007887 ORTHO05D009725 2.3e-16 89.0 103 55.3
TAR633G0435 Trochodendron aralioides HOM05D007887 ORTHO05D009725 1.9e-15 85.9 99 55.6
Aqoxy1G00528 Aquilegia oxysepala HOM05D007887 ORTHO05D009725 2.8e-14 82.0 101 51.5
GSVIVG01025148001 Vitis vinifera HOM05D007887 ORTHO05D009725 1.1e-13 80.1 102 55.9
Actinidia24082 Actinidia chinensis HOM05D007887 ORTHO05D009725 1.4e-13 79.7 102 54.9
Medtr4g060620 Medicago truncatula HOM05D007887 ORTHO05D009725 1.2e-12 76.6 102 51.0
TPR.G36408 Trifolium pratense HOM05D007887 ORTHO05D009725 2.6e-12 75.5 101 49.5
Hma1.2p1_0071F.1_g038090 Hydrangea macrophylla HOM05D007887 ORTHO05D009725 4.4e-12 74.7 90 54.4
Glyma.11G153796 Glycine max HOM05D007887 ORTHO05D009725 7.5e-12 73.9 107 54.2
Glyma.12G071500 Glycine max HOM05D007887 ORTHO05D009725 2.2e-11 72.4 100 50.0
CANSAT54G2812 Cannabis sativa HOM05D007887 ORTHO05D009725 2.9e-11 72.0 100 48.0
Ciclev10029602m.g Citrus clementina HOM05D007887 ORTHO05D009725 3.7e-11 71.6 43 79.1
Prupe.6G096000 Prunus persica HOM05D007887 ORTHO05D009725 8.3e-11 70.5 83 55.4
Lalb_Chr19g0137421 Lupinus albus HOM05D007887 ORTHO05D009725 3.2e-10 68.6 97 48.5
Lalb_Chr03g0027141 Lupinus albus HOM05D007887 ORTHO05D009725 5.4e-10 67.8 91 50.5
Cc01_g11470 Coffea canephora HOM05D007887 ORTHO05D009725 1.6e-09 66.2 118 41.5
PGR119G2346 Punica granatum HOM05D007887 ORTHO05D009725 2.1e-09 65.9 105 49.5
Psat7g222640 Pisum sativum HOM05D007887 ORTHO05D009725 1.0e-08 63.5 101 47.5
arahy.Tifrunner.gnm1.ann1.ZKT7Q5 Arachis hypogaea HOM05D007887 ORTHO05D009725 1.7e-08 62.8 59 62.7
Glyma.13G328200 Glycine max HOM05D007887 ORTHO05D009725 1.7e-08 62.8 99 46.5
Ca_01431_v3 Cicer arietinum L. HOM05D007887 ORTHO05D009725 2.3e-08 62.4 91 46.2
arahy.Tifrunner.gnm1.ann1.5EA918 Arachis hypogaea HOM05D007887 ORTHO05D009725 5.1e-08 61.2 47 68.1
COL.COLO4_05193 Corchorus olitorius HOM05D007887 ORTHO05D009725 5.1e-08 61.2 71 57.7
HanXRQChr13g0404441 Helianthus annuus HOM05D007887 ORTHO05D009725 8.6e-08 60.5 111 38.7
Lj3g0000190 Lotus japonicus HOM05D007887 ORTHO05D009725 1.5e-07 59.7 98 48.0
Eucgr.J00947 Eucalyptus grandis HOM05D007887 ORTHO05D009725 1.9e-07 59.3 81 50.6
Gohir.A13G220700 Gossypium hirsutum HOM05D037992 ORTHO05D009725 3.3e-07 58.5 102 45.1
arahy.Tifrunner.gnm1.ann1.VU6S4B Arachis hypogaea HOM05D007887 ORTHO05D009725 5.6e-07 57.8 69 55.1
Lj3g0011826 Lotus japonicus HOM05D007887 ORTHO05D009725 7.3e-07 57.4 100 46.0
AT5G60400 Arabidopsis thaliana HOM05D007887 ORTHO05D009725 9.5e-07 57.0 94 43.6
PSO339G0915 Papaver somniferum HOM05D007887 ORTHO05D009725 1.2e-06 56.6 105 41.9
A03p11140 Brassica napus HOM05D007887 ORTHO05D009725 2.1e-06 55.8 99 43.4
arahy.Tifrunner.gnm1.ann1.QG78WL Arachis hypogaea HOM05D007887 ORTHO05D009725 2.8e-06 55.5 59 57.6
BcaC03g13976 Brassica carinata HOM05D007887 ORTHO05D009725 2.8e-06 55.5 102 42.2
BolC2t07269H Brassica oleracea HOM05D007887 ORTHO05D009725 4.7e-06 54.7 102 42.2
BraA02t05730Z Brassica rapa HOM05D007887 ORTHO05D009725 4.7e-06 54.7 105 41.0
BcaB01g04657 Brassica carinata HOM05D007887 ORTHO05D009725 6.2e-06 54.3 102 40.2
BcaC04g19700 Brassica carinata HOM05D007887 ORTHO05D009725 8.1e-06 53.9 101 42.6
C03p12840 Brassica napus HOM05D007887 ORTHO05D009725 8.1e-06 53.9 96 40.6
C09p53030 Brassica napus HOM05D007887 ORTHO05D009725 8.1e-06 53.9 101 42.6
BraA03t10429Z Brassica rapa HOM05D007887 ORTHO05D009725 8.1e-06 53.9 94 40.4
CARHR274070 Cardamine hirsuta HOM05D007887 ORTHO05D009725 8.1e-06 53.9 93 44.1


User provided reference genes

Program Settings