Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G1500 Fragaria x ananassa HOM05D002590 ORTHO05D002763 7.2e-74 280.4 135 100.0
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 1.0e-51 206.8 114 88.6
FAN21G1961 Fragaria x ananassa HOM05D002590 ORTHO05D002763 4.7e-49 198.0 114 86.0
RcHm_v2.0_Chr2g0109991 Rosa chinensis HOM05D002590 ORTHO05D002763 1.3e-46 189.9 114 78.9
FvH4_1g18970 Fragaria vesca HOM05D002590 ORTHO05D002763 3.7e-46 188.3 114 78.9
FAN19G1400 Fragaria x ananassa HOM05D002590 ORTHO05D002763 3.7e-46 188.3 114 78.9
FAN28G1499 Fragaria x ananassa HOM05D002590 ORTHO05D002763 8.3e-46 187.2 114 78.1
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 3.2e-45 185.3 114 78.1
FAN26G3252 Fragaria x ananassa HOM05D002590 ORTHO05D002763 2.1e-44 182.6 107 80.4
Prupe.6G209600 Prunus persica HOM05D002590 ORTHO05D002763 5.6e-34 147.9 114 63.2
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 1.4e-32 143.3 86 81.4
MD01G1044900 Malus domestica HOM05D002590 ORTHO05D002763 1.2e-28 130.2 114 57.9
Dinv36977 Davidia involucrata HOM05D002590 ORTHO05D002763 3.1e-24 115.5 114 50.0
CSS0030408 Camellia sinensis var. sinensis HOM05D002590 ORTHO05D002763 4.0e-24 115.2 114 50.9
Ciclev10024875m.g Citrus clementina HOM05D002590 ORTHO05D002763 1.2e-23 113.6 114 50.9
Lj4C175G12 Lonicera japonica HOM05D002590 ORTHO05D002763 4.5e-23 111.7 114 49.1
Lj2g0000215 Lotus japonicus HOM05D002590 ORTHO05D002763 4.5e-23 111.7 114 48.2
Thecc.01G083700 Theobroma cacao HOM05D002590 ORTHO05D002763 4.5e-23 111.7 115 51.3
Peaxi162Scf00943g00417 Petunia axillaris HOM05D002590 ORTHO05D002763 1.3e-22 110.2 114 46.5
CAN.G215.6 Capsicum annuum HOM05D002590 ORTHO05D002763 2.2e-22 109.4 114 46.5
TAR376G0018 Trochodendron aralioides HOM05D002590 ORTHO05D002763 2.9e-22 109.0 114 45.6
TAR381G1305 Trochodendron aralioides HOM05D002590 ORTHO05D002763 4.9e-22 108.2 114 46.5
TAR381G1618 Trochodendron aralioides HOM05D002590 ORTHO05D002763 4.9e-22 108.2 114 46.5
Duzib187G0808 Durio zibethinus HOM05D002590 ORTHO05D002763 6.4e-22 107.8 115 50.4
PGSC0003DMG400010387 Solanum tuberosum HOM05D002590 ORTHO05D002763 6.4e-22 107.8 114 46.5
Hma1.2p1_0080F.1_g042110 Hydrangea macrophylla HOM05D002590 ORTHO05D002763 8.4e-22 107.5 114 45.6
CiPaw.07G042400 Carya illinoinensis HOM05D002590 ORTHO05D002763 1.1e-21 107.1 114 49.1
Haze_03932 Corylus avellana HOM05D002590 ORTHO05D002763 1.4e-21 106.7 114 50.9
CiPaw.08G145500 Carya illinoinensis HOM05D002590 ORTHO05D002763 1.9e-21 106.3 113 49.6
COL.COLO4_11678 Corchorus olitorius HOM05D002590 ORTHO05D002763 1.9e-21 106.3 115 48.7
Nitab4.5_0002713g0020 Nicotiana tabacum HOM05D002590 ORTHO05D002763 1.9e-21 106.3 114 47.4
Psat2g134480 Pisum sativum HOM05D002590 ORTHO05D002763 2.4e-21 105.9 114 48.2
Sopen02g014540 Solanum pennellii HOM05D002590 ORTHO05D002763 2.4e-21 105.9 114 45.6
Nitab4.5_0000036g0420 Nicotiana tabacum HOM05D002590 ORTHO05D002763 3.2e-21 105.5 114 47.4
Solyc02g063450.4 Solanum lycopersicum HOM05D002590 ORTHO05D002763 4.2e-21 105.1 114 45.6
GSVIVG01006770001 Vitis vinifera HOM05D002590 ORTHO05D002763 4.2e-21 105.1 117 47.0
Actinidia11925 Actinidia chinensis HOM05D002590 ORTHO05D002763 5.4e-21 104.8 113 49.6
Cc07_g07850 Coffea canephora HOM05D002590 ORTHO05D002763 7.1e-21 104.4 127 42.5
Gohir.D03G034500 Gossypium hirsutum HOM05D002590 ORTHO05D002763 7.1e-21 104.4 115 48.7
Gorai.003G036200 Gossypium raimondii HOM05D002590 ORTHO05D002763 7.1e-21 104.4 115 48.7
Nitab4.5_0000291g0070 Nicotiana tabacum HOM05D002590 ORTHO05D002763 7.1e-21 104.4 124 41.9
Atru.chr3.1151 Acer truncatum HOM05D002590 ORTHO05D002763 9.3e-21 104.0 114 45.6
Atru.chr3.1168 Acer truncatum HOM05D002590 ORTHO05D002763 9.3e-21 104.0 114 45.6
Eucgr.I00602 Eucalyptus grandis HOM05D002590 ORTHO05D002763 1.6e-20 103.2 132 42.4
Nitab4.5_0002135g0020 Nicotiana tabacum HOM05D002590 ORTHO05D002763 2.1e-20 102.8 128 41.4
TWI74G1198 Tripterygium wilfordii HOM05D002590 ORTHO05D002763 2.1e-20 102.8 114 44.7
Manes.13G104100 Manihot esculenta HOM05D002590 ORTHO05D002763 2.7e-20 102.4 114 46.5
Cpa.g.sc755.1 Carica papaya HOM05D002590 ORTHO05D002763 3.5e-20 102.1 114 49.1
Gohir.A02G146100 Gossypium hirsutum HOM05D002590 ORTHO05D002763 3.5e-20 102.1 115 48.7
TPR.G37027 Trifolium pratense HOM05D002590 ORTHO05D002763 3.5e-20 102.1 132 43.9
Sc03g0000580 Simmondsia chinensis HOM05D002590 ORTHO05D002763 4.6e-20 101.7 114 43.9
Glyma.01G019800 Glycine max HOM05D002590 ORTHO05D002763 6.0e-20 101.3 114 45.6
Aa31LG7G14160 Aethionema arabicum HOM05D002590 ORTHO05D002763 7.9e-20 100.9 114 46.5
Glyma.09G202600 Glycine max HOM05D002590 ORTHO05D002763 1.0e-19 100.5 114 45.6
QL06p037430 Quercus lobata HOM05D002590 ORTHO05D002763 1.0e-19 100.5 114 49.1
Ca_13471_v3 Cicer arietinum L. HOM05D002590 ORTHO05D002763 1.3e-19 100.1 114 45.6
Lalb_Chr16g0381481 Lupinus albus HOM05D002590 ORTHO05D002763 1.3e-19 100.1 114 46.5
Sabra15G0049300 Salix brachista HOM05D002590 ORTHO05D002763 1.3e-19 100.1 116 41.4
vmacro05519 Vaccinium macrocarpon HOM05D002590 ORTHO05D002763 1.3e-19 100.1 114 47.4
Medtr5g030890 Medicago truncatula HOM05D002590 ORTHO05D002763 2.3e-19 99.4 132 41.7
Rhsim04G0250100 Rhododendron simsii HOM05D002590 ORTHO05D002763 3.9e-19 98.6 114 47.4
Rhsim07G0172500 Rhododendron simsii HOM05D002590 ORTHO05D002763 3.9e-19 98.6 114 47.4
CAN.G1061.26 Capsicum annuum HOM05D002590 ORTHO05D002763 5.1e-19 98.2 143 37.1
MBI16_g44750_MAGBIO Magnolia biondii HOM05D002590 ORTHO05D002763 6.7e-19 97.8 123 41.5
arahy.Tifrunner.gnm1.ann1.KU7V2S Arachis hypogaea HOM05D002590 ORTHO05D002763 8.7e-19 97.4 113 46.0
Potri.015G042800 Populus trichocarpa HOM05D002590 ORTHO05D002763 1.1e-18 97.1 116 42.2
Sopen02g036260 Solanum pennellii HOM05D002590 ORTHO05D002763 1.1e-18 97.1 114 40.4
PGR031G2118 Punica granatum HOM05D002590 ORTHO05D002763 1.5e-18 96.7 124 41.9
CANSAT01G0583 Cannabis sativa HOM05D002590 ORTHO05D002763 1.9e-18 96.3 114 45.6
Hund16613 Selenicereus undatus HOM05D002590 ORTHO05D002763 1.9e-18 96.3 115 47.0
Migut.H00293 Erythranthe guttata HOM05D002590 ORTHO05D002763 2.5e-18 95.9 114 43.0
Solyc02g091650.4 Solanum lycopersicum HOM05D002590 ORTHO05D002763 2.5e-18 95.9 114 40.4
Aqoxy6G00635 Aquilegia oxysepala HOM05D002590 ORTHO05D002763 4.3e-18 95.1 110 43.6
MELO3C013963.2 Cucumis melo HOM05D002590 ORTHO05D002763 4.3e-18 95.1 109 47.7
Sabra15G0042600 Salix brachista HOM05D002590 ORTHO05D002763 4.3e-18 95.1 116 40.5
TWI56G0280 Tripterygium wilfordii HOM05D002590 ORTHO05D002763 1.6e-17 93.2 113 41.6
arahy.Tifrunner.gnm1.ann1.WNQW91 Arachis hypogaea HOM05D002590 ORTHO05D002763 2.8e-17 92.4 107 44.9
arahy.Tifrunner.gnm1.ann1.ZD0NI5 Arachis hypogaea HOM05D002590 ORTHO05D002763 2.8e-17 92.4 107 44.9
Sed0010498 Sechium edule HOM05D002590 ORTHO05D002763 8.1e-17 90.9 109 46.8
AL4G12200 Arabidopsis lyrata HOM05D002590 ORTHO05D002763 1.1e-16 90.5 116 44.0
BcaB06g27814 Brassica carinata HOM05D002590 ORTHO05D002763 1.4e-16 90.1 116 44.8
AT2G22660 Arabidopsis thaliana HOM05D002590 ORTHO05D002763 2.4e-16 89.4 116 44.0
CARHR113920 Cardamine hirsuta HOM05D002590 ORTHO05D002763 2.4e-16 89.4 117 44.4
CsaV3_3G003000 Cucumis sativus L. HOM05D002590 ORTHO05D002763 2.4e-16 89.4 111 46.8
MSTRG.3507 Avicennia marina HOM05D002590 ORTHO05D002763 3.1e-16 89.0 110 39.1
Aa31LG6G14820 Aethionema arabicum HOM05D002590 ORTHO05D002763 4.0e-16 88.6 100 46.0
Nn5g29774 Nelumbo nucifera HOM05D002590 ORTHO05D002763 4.0e-16 88.6 114 43.0
Sp4g01683 Schrenkiella parvula HOM05D002590 ORTHO05D002763 9.0e-16 87.4 116 44.0
Manes.12G121200 Manihot esculenta HOM05D002590 ORTHO05D002763 1.2e-15 87.0 107 43.9
Carub.0004s0181 Capsella rubella HOM05D002590 ORTHO05D002763 2.6e-15 85.9 116 44.0
A04p17130 Brassica napus HOM05D002590 ORTHO05D002763 4.5e-15 85.1 116 43.1
BraA04t17342Z Brassica rapa HOM05D002590 ORTHO05D002763 4.5e-15 85.1 116 43.1
PSO210G0325 Papaver somniferum HOM05D002590 ORTHO05D002763 5.8e-15 84.7 129 36.4
Sp7g35540 Schrenkiella parvula HOM05D002590 ORTHO05D002763 5.8e-15 84.7 108 43.5
Ah.02g129220 Amaranthus hybridus HOM05D002590 ORTHO05D002763 7.6e-15 84.3 111 36.9
CSS0035578 Camellia sinensis var. sinensis HOM05D002590 ORTHO05D002763 1.3e-14 83.6 113 35.4
SalBow3G3065 Salvia bowleyana HOM05D002590 ORTHO05D002763 1.3e-14 83.6 110 40.0
SGA_v2.0_scaffold149G36515 Striga asiatica HOM05D002590 ORTHO05D002763 1.3e-14 83.6 112 42.9
PGSC0003DMG400030615 Solanum tuberosum HOM05D002590 ORTHO05D002763 1.7e-14 83.2 116 37.1
VMungo1215G2859 Vigna mungo HOM05D002590 ORTHO05D002763 1.7e-14 83.2 113 37.2
BcaB03g12326 Brassica carinata HOM05D002590 ORTHO05D002763 2.2e-14 82.8 108 42.6
ClCG00G003360 Citrullus lanatus HOM05D002590 ORTHO05D002763 2.2e-14 82.8 109 44.0
ClCG10G002950 Citrullus lanatus HOM05D002590 ORTHO05D002763 2.2e-14 82.8 109 44.0
BcaC02g08627 Brassica carinata HOM05D002590 ORTHO05D002763 2.9e-14 82.4 116 43.1
BolC4t26766H Brassica oleracea HOM05D002590 ORTHO05D002763 2.9e-14 82.4 116 43.1
AUR62032878 Chenopodium quinoa HOM05D002590 ORTHO05D002763 3.8e-14 82.0 112 38.4
Thhalv10024448m.g Eutrema salsugineum HOM05D002590 ORTHO05D002763 3.8e-14 82.0 107 41.1
Phvul.002G143100 Phaseolus vulgaris HOM05D002590 ORTHO05D002763 3.8e-14 82.0 109 37.6
C04p51940 Brassica napus HOM05D002590 ORTHO05D002763 4.9e-14 81.6 116 43.1
ECA232G2374 Erigeron canadensis HOM05D002590 ORTHO05D002763 6.4e-14 81.3 104 38.5
PSO210G6445 Papaver somniferum HOM05D002590 ORTHO05D002763 6.4e-14 81.3 114 36.8
Carub.0007s0232 Capsella rubella HOM05D002590 ORTHO05D002763 1.1e-13 80.5 107 41.1
SalBow3G1385 Salvia bowleyana HOM05D002590 ORTHO05D002763 1.1e-13 80.5 110 39.1
AL7G12750 Arabidopsis lyrata HOM05D002590 ORTHO05D002763 1.9e-13 79.7 107 42.1
Thhalv10000046m.g Eutrema salsugineum HOM05D002590 ORTHO05D002763 1.9e-13 79.7 118 40.7
A08p22920 Brassica napus HOM05D002590 ORTHO05D002763 2.4e-13 79.3 105 42.9
AT4G37900 Arabidopsis thaliana HOM05D002590 ORTHO05D002763 3.2e-13 79.0 107 41.1
Cfa013829 Carpinus fangiana HOM05D002590 ORTHO05D002763 3.2e-13 79.0 102 38.2
Aa31LG7G14140 Aethionema arabicum HOM05D002590 ORTHO05D002763 4.2e-13 78.6 100 41.0
C03p78950 Brassica napus HOM05D002590 ORTHO05D002763 7.1e-13 77.8 105 41.9
BraA08t34254Z Brassica rapa HOM05D002590 ORTHO05D002763 9.3e-13 77.4 105 41.9
SalBow3G1036 Salvia bowleyana HOM05D002590 ORTHO05D002763 1.6e-12 76.6 91 42.9
THA.LOC104807659 Tarenaya hassleriana HOM05D002590 ORTHO05D002763 1.6e-12 76.6 115 39.1
Migut.L00448 Erythranthe guttata HOM05D002590 ORTHO05D002763 2.1e-12 76.3 124 35.5
EL10Ac6g13303 Beta vulgaris HOM05D002590 ORTHO05D002763 2.7e-12 75.9 114 35.1
BcaC01g00368 Brassica carinata HOM05D002590 ORTHO05D002763 6.0e-12 74.7 100 42.0
BolC3t20138H Brassica oleracea HOM05D002590 ORTHO05D002763 6.0e-12 74.7 100 42.0
Dinv44885 Davidia involucrata HOM05D002590 ORTHO05D002763 6.0e-12 74.7 100 38.0
Manes.05G187500 Manihot esculenta HOM05D002590 ORTHO05D002763 6.0e-12 74.7 107 36.4
FvH4_5g33890 Fragaria vesca HOM05D002590 ORTHO05D002763 8.7e-11 70.9 112 33.9
CiPaw.07G161800 Carya illinoinensis HOM05D002590 ORTHO05D002763 1.1e-10 70.5 113 34.5
CARHR246310 Cardamine hirsuta HOM05D002590 ORTHO05D002763 5.6e-10 68.2 102 42.2
Actinidia19606 Actinidia chinensis HOM05D002590 ORTHO05D002763 7.4e-10 67.8 101 36.6
CARHR246300 Cardamine hirsuta HOM05D002590 ORTHO05D002763 9.6e-10 67.4 103 41.7
QL12p039990 Quercus lobata HOM05D002590 ORTHO05D002763 2.8e-09 65.9 110 33.6
Zm00001eb166550 Zea mays HOM05D002590 ORTHO05D002763 8.2e-09 64.3 98 35.7
Duzib093G1484 Durio zibethinus HOM05D002590 ORTHO05D002763 1.1e-08 63.9 85 40.0
Gohir.A06G074100 Gossypium hirsutum HOM05D002590 ORTHO05D002763 1.1e-08 63.9 113 37.2
Atru.chr13.944 Acer truncatum HOM05D002590 ORTHO05D002763 1.4e-08 63.5 107 36.4
Gorai.010G085100 Gossypium raimondii HOM05D002590 ORTHO05D002763 3.1e-08 62.4 83 41.0
HanXRQChr09g0262881 Helianthus annuus HOM05D002590 ORTHO05D002763 1.5e-07 60.1 99 32.3
RcHm_v2.0_Chr7g0233251 Rosa chinensis HOM05D002590 ORTHO05D002763 1.5e-07 60.1 82 37.8
BcaNung03410 Brassica carinata HOM05D002590 ORTHO05D002763 2.0e-07 59.7 90 42.2
C07p62730 Brassica napus HOM05D002590 ORTHO05D002763 2.0e-07 59.7 90 42.2
BolC7t46687H Brassica oleracea HOM05D002590 ORTHO05D002763 2.0e-07 59.7 90 42.2
MD08G1208800 Malus domestica HOM05D002590 ORTHO05D002763 2.0e-07 59.7 65 44.6
Eucgr.F02168 Eucalyptus grandis HOM05D002590 ORTHO05D002763 2.6e-07 59.3 98 31.6
HanXRQChr14g0447071 Helianthus annuus HOM05D002590 ORTHO05D002763 7.6e-07 57.8 108 35.2
arahy.Tifrunner.gnm1.ann1.F9GNLP Arachis hypogaea HOM05D002590 ORTHO05D002763 2.2e-06 56.2 105 35.2
arahy.Tifrunner.gnm1.ann1.U2GM3Q Arachis hypogaea HOM05D002590 ORTHO05D002763 2.2e-06 56.2 105 35.2


User provided reference genes

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