Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 0.0e+00 1432.2 713 100.0
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 0.0e+00 1328.5 760 89.3
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 0.0e+00 1312.7 673 97.0
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 0.0e+00 1298.9 691 94.4
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 2.1e-265 919.1 677 70.3
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.5e-263 912.9 473 96.6
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 2.7e-260 902.1 701 67.0
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 4.5e-231 805.1 704 59.8
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 7.9e-228 794.3 701 60.2
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 3.2e-221 772.3 702 58.3
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 3.5e-220 768.8 705 58.0
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 1.9e-213 746.5 695 56.8
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 1.9e-213 746.5 695 57.0
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 5.5e-213 745.0 699 57.2
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 4.6e-212 741.9 704 56.2
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 8.7e-211 737.6 705 56.9
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 6.9e-208 728.0 702 55.4
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 1.3e-206 723.8 657 56.0
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 1.7e-206 723.4 668 57.0
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 1.7e-206 723.4 702 54.4
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 7.2e-205 718.0 702 54.6
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 9.4e-205 717.6 694 54.9
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 1.6e-204 716.8 714 53.8
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 1.5e-202 710.3 679 55.2
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 9.7e-202 707.6 701 54.1
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 1.7e-201 706.8 693 53.7
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 2.8e-201 706.1 706 53.5
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 4.8e-201 705.3 693 53.2
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 8.2e-201 704.5 705 53.9
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 1.1e-200 704.1 704 53.3
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 9.1e-200 701.0 695 55.1
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 1.0e-198 697.6 696 52.9
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 2.2e-198 696.4 696 56.0
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 1.9e-197 693.3 717 51.3
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 1.2e-196 690.6 701 52.1
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 1.0e-195 687.6 627 58.5
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 5.2e-195 685.3 720 53.6
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 8.8e-195 684.5 698 54.6
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 4.4e-194 682.2 660 56.1
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 2.0e-191 673.3 703 50.4
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 1.5e-189 667.2 749 49.3
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 1.2e-188 664.1 704 52.3
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 2.7e-188 662.9 703 49.9
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.5e-186 657.1 731 50.5
Duzib213G0171 Durio zibethinus HOM05D005685 ORTHO05D007046 2.6e-186 656.4 696 52.0
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 3.3e-186 656.0 699 51.2
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 2.8e-185 652.9 686 51.5
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 1.4e-184 650.6 563 60.6
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.6e-183 647.1 660 54.2
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 2.0e-183 646.7 721 49.7
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 3.8e-182 642.5 702 49.0
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 5.0e-182 642.1 679 52.3
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 1.9e-181 640.2 682 51.3
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 2.1e-180 636.7 705 48.9
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 1.0e-179 634.4 725 49.2
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 3.0e-179 632.9 694 50.4
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 9.8e-178 627.9 668 51.0
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 1.1e-176 624.4 692 48.7
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 3.1e-176 622.9 692 48.7
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 9.1e-176 621.3 689 48.6
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 2.7e-175 619.8 679 50.1
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 2.7e-175 619.8 680 50.0
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 5.9e-175 618.6 678 50.1
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 1.1e-173 614.4 702 48.9
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 1.9e-173 613.6 703 47.1
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 4.2e-173 612.5 706 48.2
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 4.2e-173 612.5 673 48.1
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 2.1e-172 610.1 683 48.6
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 2.7e-172 609.8 696 50.6
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 2.3e-171 606.7 712 49.6
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 1.5e-170 604.0 706 48.0
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 1.5e-170 604.0 689 46.9
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 7.5e-170 601.7 714 45.8
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 2.2e-169 600.1 684 48.2
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 1.4e-168 597.4 660 50.2
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 1.6e-167 594.0 686 49.1
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 1.7e-166 590.5 714 46.9
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 2.9e-166 589.7 689 48.0
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 3.8e-166 589.3 705 47.0
Aa31LG4G2430 Aethionema arabicum HOM05D005685 ORTHO05D007046 8.6e-166 588.2 651 49.0
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 2.5e-165 586.6 701 46.6
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 5.6e-165 585.5 696 47.4
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 2.3e-163 580.1 682 47.9
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 4.4e-162 575.9 651 48.2
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 5.6e-157 558.9 629 48.8
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 1.5e-154 550.8 659 48.6
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 2.0e-154 550.4 750 42.7
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 1.3e-153 547.7 699 43.3
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 1.0e-150 538.1 682 45.3
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 1.5e-146 524.2 707 41.9
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 9.2e-144 515.0 719 43.1
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 2.7e-143 513.5 590 48.3
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 2.7e-143 513.5 659 42.5
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 1.1e-141 508.1 699 41.5
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 4.0e-139 499.6 538 51.7
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 6.8e-139 498.8 692 43.1
RcHm_v2.0_Chr5g0028891 Rosa chinensis HOM05D005685 ORTHO05D007046 1.9e-136 490.7 275 89.8
Zm00001eb004590 Zea mays HOM05D005685 ORTHO05D007046 6.0e-135 485.7 701 41.1
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 2.9e-129 466.8 505 52.3
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 7.1e-128 462.2 506 51.0
Pp3c20_21160 Physcomitrium patens HOM05D005685 ORTHO05D007046 2.2e-121 440.7 756 36.0
AagrBONN_evm.TU.Sc2ySwM_228.1006 Anthoceros agrestis HOM05D005685 ORTHO05D007046 1.0e-118 431.8 765 35.4
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 2.0e-114 417.5 513 48.1
SMO351G0414 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 4.5e-114 416.4 664 38.0
SEGI_25985 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 9.9e-114 415.2 625 37.6
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 1.3e-113 414.8 512 48.0
DCAR_013783 Daucus carota HOM05D005685 ORTHO05D007046 5.8e-106 389.4 680 37.6
Mapoly0011s0171 Marchantia polymorpha HOM05D005685 ORTHO05D007046 1.4e-104 384.8 763 35.5
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 1.8e-102 377.9 625 38.6
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 2.5e-101 374.0 478 47.7
CSS0011531 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 9.7e-101 372.1 385 52.5
Nitab4.5_0003618g0060 Nicotiana tabacum HOM05D005685 ORTHO05D007046 5.3e-99 366.3 719 34.9
Eucgr.F03221 Eucalyptus grandis HOM05D005685 ORTHO05D007046 3.2e-96 357.1 364 52.5
TWI38G0887 Tripterygium wilfordii HOM05D005685 ORTHO05D007046 3.6e-95 353.6 247 69.2
BraA06t26874Z Brassica rapa HOM05D005685 ORTHO05D007046 3.8e-89 333.6 323 56.0
Glyma.15G212100 Glycine max HOM05D005685 ORTHO05D007046 1.5e-72 278.5 209 63.2
Os10g0567300 Oryza sativa ssp. japonica HOM05D005685 ORTHO05D007046 3.5e-66 257.3 302 45.7
CDE04G2909 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 5.0e-65 253.4 329 42.9
Eucgr.F03222 Eucalyptus grandis HOM05D005685 ORTHO05D007046 3.1e-59 234.2 330 42.7
CDE04G0489 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 2.9e-49 201.1 296 41.2
CSS0047371 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 1.1e-48 199.1 117 77.8
MBI19_g17443_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 1.7e-25 122.1 108 58.3
Zm00001eb210210 Zea mays HOM05D005685 ORTHO05D007046 2.1e-23 115.2 153 43.8
Pp3c7_2410 Physcomitrium patens HOM05D005685 ORTHO05D007046 4.4e-21 107.5 200 37.5
Mapoly0028s0082 Marchantia polymorpha HOM05D005685 ORTHO05D007046 4.9e-20 104.0 134 44.0
SEGI_34067 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 1.1e-19 102.8 129 41.9
SMO145G0004 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 1.4e-19 102.4 154 42.2
CBR_g19551 Chara braunii HOM05D005685 ORTHO05D007046 1.2e-18 99.4 129 44.2
CSS0003149 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 8.7e-17 93.2 83 59.0
CBR_g28498 Chara braunii HOM05D005685 ORTHO05D007046 4.9e-12 77.4 70 54.3
RcHm_v2.0_Chr5g0028901 Rosa chinensis HOM05D005685 ORTHO05D007046 3.5e-10 71.2 43 74.4
MBI19_g17438_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 1.3e-07 62.8 57 56.1
A08p10430 Brassica napus HOM05D005685 ORTHO05D007046 1.8e-06 58.9 121 33.9


User provided reference genes

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