Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G1161 Fragaria x ananassa HOM05D000718 ORTHO05D007431 3.0e-265 917.9 451 100.0
FvH4_3g18310 Fragaria vesca HOM05D000718 ORTHO05D007431 1.2e-258 896.0 451 96.9
FAN16G1727 Fragaria x ananassa HOM05D000718 ORTHO05D007431 1.3e-255 885.9 460 94.8
FAN11G0057 Fragaria x ananassa HOM05D000718 ORTHO05D007431 3.4e-253 877.9 451 95.6
RcHm_v2.0_Chr5g0030941 Rosa chinensis HOM05D000718 ORTHO05D007431 3.7e-247 857.8 451 93.3
Prupe.4G164800 Prunus persica HOM05D000718 ORTHO05D007431 2.0e-229 798.9 453 85.7
MD03G1243500 Malus domestica HOM05D000718 ORTHO05D007431 7.7e-229 797.0 454 85.5
FAN21G3716 Fragaria x ananassa HOM05D000718 ORTHO05D007431 9.7e-224 780.0 393 96.4
CANSAT35G0289 Cannabis sativa HOM05D000718 ORTHO05D007431 1.5e-208 729.6 456 77.4
Haze_09324 Corylus avellana HOM05D000718 ORTHO05D007431 3.4e-208 728.4 470 75.7
CiPaw.11G160400 Carya illinoinensis HOM05D000718 ORTHO05D007431 1.7e-207 726.1 458 76.2
Lj3g0001987 Lotus japonicus HOM05D000718 ORTHO05D007431 5.9e-205 717.6 457 74.6
GSVIVG01014199001 Vitis vinifera HOM05D000718 ORTHO05D007431 1.1e-203 713.4 456 74.3
Ca_12194_v3 Cicer arietinum L. HOM05D000718 ORTHO05D007431 1.5e-203 713.0 457 73.7
Cfa019567 Carpinus fangiana HOM05D000718 ORTHO05D007431 4.0e-201 704.9 443 76.3
Eucgr.K01884 Eucalyptus grandis HOM05D000718 ORTHO05D007431 9.8e-200 700.3 450 74.0
Psat0s1037g0040 Pisum sativum HOM05D000718 ORTHO05D007431 1.7e-199 699.5 460 73.3
Dinv18364 Davidia involucrata HOM05D000718 ORTHO05D007431 2.2e-199 699.1 459 74.5
Duzib187G1570 Durio zibethinus HOM05D000718 ORTHO05D007431 2.8e-199 698.7 450 72.9
THA.LOC104822564 Tarenaya hassleriana HOM05D000718 ORTHO05D007431 4.9e-199 698.0 456 72.6
Rhsim06G0207800 Rhododendron simsii HOM05D000718 ORTHO05D007431 8.3e-199 697.2 454 74.9
Lalb_Chr01g0006831 Lupinus albus HOM05D000718 ORTHO05D007431 1.4e-198 696.4 453 73.1
PGR031G2045 Punica granatum HOM05D000718 ORTHO05D007431 1.8e-198 696.0 454 73.3
Lj1A829G32 Lonicera japonica HOM05D000718 ORTHO05D007431 7.0e-198 694.1 457 72.6
Thecc.07G114900 Theobroma cacao HOM05D000718 ORTHO05D007431 1.2e-197 693.3 447 72.3
TPR.G16488 Trifolium pratense HOM05D000718 ORTHO05D007431 2.0e-197 692.6 458 72.7
arahy.Tifrunner.gnm1.ann1.6IHZ0U Arachis hypogaea HOM05D000718 ORTHO05D007431 5.9e-197 691.0 459 72.3
QL08p026242 Quercus lobata HOM05D000718 ORTHO05D007431 5.9e-197 691.0 470 73.2
Sed0007644 Sechium edule HOM05D000718 ORTHO05D007431 5.9e-197 691.0 453 71.1
ClCG11G017460 Citrullus lanatus HOM05D000718 ORTHO05D007431 2.3e-196 689.1 457 72.6
Glyma.12G157600 Glycine max HOM05D000718 ORTHO05D007431 5.0e-196 688.0 457 71.8
COL.COLO4_17547 Corchorus olitorius HOM05D000718 ORTHO05D007431 6.6e-196 687.6 471 69.9
MELO3C025639.2 Cucumis melo HOM05D000718 ORTHO05D007431 1.1e-195 686.8 457 72.2
arahy.Tifrunner.gnm1.ann1.STN4DM Arachis hypogaea HOM05D000718 ORTHO05D007431 2.8e-194 682.2 455 72.1
Atru.chr2.2147 Acer truncatum HOM05D000718 ORTHO05D007431 4.7e-194 681.4 456 71.7
TWI39G0589 Tripterygium wilfordii HOM05D000718 ORTHO05D007431 8.0e-194 680.6 453 72.0
Glyma.06G228900 Glycine max HOM05D000718 ORTHO05D007431 1.8e-193 679.5 458 71.0
Thhalv10020708m.g Eutrema salsugineum HOM05D000718 ORTHO05D007431 5.2e-193 677.9 455 72.1
CARHR089850 Cardamine hirsuta HOM05D000718 ORTHO05D007431 1.2e-192 676.8 455 70.8
Carub.0003s1457 Capsella rubella HOM05D000718 ORTHO05D007431 2.0e-192 676.0 455 70.8
Ah.04g164270 Amaranthus hybridus HOM05D000718 ORTHO05D007431 4.4e-192 674.9 457 70.9
Actinidia12577 Actinidia chinensis HOM05D000718 ORTHO05D007431 5.8e-192 674.5 457 71.8
AL3G27230 Arabidopsis lyrata HOM05D000718 ORTHO05D007431 7.5e-192 674.1 455 70.8
Potri.001G390700 Populus trichocarpa HOM05D000718 ORTHO05D007431 2.2e-191 672.5 454 70.9
Medtr8g464030 Medicago truncatula HOM05D000718 ORTHO05D007431 6.4e-191 671.0 497 66.6
Gohir.A01G054400 Gossypium hirsutum HOM05D000718 ORTHO05D007431 8.3e-191 670.6 449 70.8
Gorai.002G054700 Gossypium raimondii HOM05D000718 ORTHO05D007431 3.2e-190 668.7 449 70.4
BolC5t33913H Brassica oleracea HOM05D000718 ORTHO05D007431 5.4e-190 667.9 455 70.5
Lalb_Chr03g0031171 Lupinus albus HOM05D000718 ORTHO05D007431 7.0e-190 667.5 453 70.6
Gohir.D01G042724 Gossypium hirsutum HOM05D000718 ORTHO05D007431 9.2e-190 667.2 449 70.2
CAN.G375.14 Capsicum annuum HOM05D000718 ORTHO05D007431 1.2e-189 666.8 455 70.8
EL10Ac4g08344 Beta vulgaris HOM05D000718 ORTHO05D007431 2.0e-189 666.0 457 69.6
PGSC0003DMG400007071 Solanum tuberosum HOM05D000718 ORTHO05D007431 2.7e-189 665.6 455 71.0
Nitab4.5_0006953g0050 Nicotiana tabacum HOM05D000718 ORTHO05D007431 1.0e-188 663.7 455 71.0
AT3G14910 Arabidopsis thaliana HOM05D000718 ORTHO05D007431 1.3e-188 663.3 455 69.5
AUR62042779 Chenopodium quinoa HOM05D000718 ORTHO05D007431 6.6e-188 661.0 471 67.7
Nitab4.5_0003565g0040 Nicotiana tabacum HOM05D000718 ORTHO05D007431 6.6e-188 661.0 455 71.0
Sopen07g030690 Solanum pennellii HOM05D000718 ORTHO05D007431 6.6e-188 661.0 455 70.5
Phvul.011G162200 Phaseolus vulgaris HOM05D000718 ORTHO05D007431 8.6e-188 660.6 460 69.1
Solyc07g062450.3 Solanum lycopersicum HOM05D000718 ORTHO05D007431 8.6e-188 660.6 455 70.3
DCAR_013156 Daucus carota HOM05D000718 ORTHO05D007431 1.9e-187 659.4 455 70.3
Hund02254 Selenicereus undatus HOM05D000718 ORTHO05D007431 1.9e-187 659.4 453 70.4
A05p34500 Brassica napus HOM05D000718 ORTHO05D007431 3.3e-187 658.7 451 70.1
BraA05t22270Z Brassica rapa HOM05D000718 ORTHO05D007431 3.3e-187 658.7 451 70.1
BcaB06g25332 Brassica carinata HOM05D000718 ORTHO05D007431 4.3e-187 658.3 448 70.3
Peaxi162Scf00111g01475 Petunia axillaris HOM05D000718 ORTHO05D007431 9.5e-187 657.1 456 70.4
Cc05_g11090 Coffea canephora HOM05D000718 ORTHO05D007431 4.7e-186 654.8 457 70.7
Oeu025333.1 Olea europaea HOM05D000718 ORTHO05D007431 2.3e-185 652.5 461 69.6
Aa31LG8G2120 Aethionema arabicum HOM05D000718 ORTHO05D007431 6.8e-185 651.0 451 69.8
vmacro23465 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 5.8e-184 647.9 471 68.8
Migut.H01998 Erythranthe guttata HOM05D000718 ORTHO05D007431 1.3e-183 646.7 466 68.9
SalBow7G4178 Salvia bowleyana HOM05D000718 ORTHO05D007431 1.4e-182 643.3 464 68.5
SalBow7G4376 Salvia bowleyana HOM05D000718 ORTHO05D007431 9.2e-182 640.6 464 68.1
PSO782G3001 Papaver somniferum HOM05D000718 ORTHO05D007431 1.3e-180 636.7 458 67.5
CSS0021542 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 1.9e-179 632.9 457 68.9
PSO478G1672 Papaver somniferum HOM05D000718 ORTHO05D007431 5.6e-179 631.3 458 66.8
HanXRQChr15g0476211 Helianthus annuus HOM05D000718 ORTHO05D007431 2.8e-178 629.0 458 67.9
SGA_v2.0_scaffold130G34293 Striga asiatica HOM05D000718 ORTHO05D007431 2.8e-178 629.0 455 68.1
Aqoxy4G00321 Aquilegia oxysepala HOM05D000718 ORTHO05D007431 1.4e-177 626.7 465 65.2
ECA240G1747 Erigeron canadensis HOM05D000718 ORTHO05D007431 4.0e-177 625.2 456 67.3
Nn1g04439 Nelumbo nucifera HOM05D000718 ORTHO05D007431 3.4e-176 622.1 425 70.8
Lsat_1_v5_gn_9_99900 Lactuca sativa HOM05D000718 ORTHO05D007431 5.8e-176 621.3 454 67.6
C05p52240 Brassica napus HOM05D000718 ORTHO05D007431 2.2e-175 619.4 427 69.6
Nn1g09174 Nelumbo nucifera HOM05D000718 ORTHO05D007431 4.6e-173 611.7 459 66.7
MBI07_g09566_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D007431 5.1e-172 608.2 513 59.5
Manes.03G101200 Manihot esculenta HOM05D000718 ORTHO05D007431 5.1e-172 608.2 398 72.4
CDE04G1093 Ceratophyllum demersum HOM05D000718 ORTHO05D007431 4.1e-166 588.6 454 62.8
VMungo1127G0879 Vigna mungo HOM05D000718 ORTHO05D007431 4.3e-163 578.6 410 68.0
CSS0043856 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 2.4e-161 572.8 455 62.2
AUR62019575 Chenopodium quinoa HOM05D000718 ORTHO05D007431 4.9e-159 565.1 425 64.2
vmacro11939 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 6.4e-159 564.7 466 63.3
ATR0602G196 Amborella trichopoda HOM05D000718 ORTHO05D007431 2.1e-157 559.7 453 60.7
CSS0014195 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 7.3e-155 551.2 455 62.4
unitig_52.g17395 Utricularia gibba HOM05D000718 ORTHO05D007431 7.4e-147 524.6 462 58.0
Os09g0315800 Oryza sativa ssp. japonica HOM05D000718 ORTHO05D007431 6.0e-141 505.0 469 57.8
HPP92_023429 Vanilla planifolia HOM05D000718 ORTHO05D007431 1.0e-140 504.2 460 56.5
SEGI_16322 Sequoiadendron giganteum HOM05D000718 ORTHO05D007431 5.3e-137 491.9 448 54.5
Ciclev10021305m.g Citrus clementina HOM05D000718 ORTHO05D007431 9.0e-137 491.1 308 77.9
MD11G1263600 Malus domestica HOM05D000718 ORTHO05D007431 9.0e-137 491.1 281 85.1
Zm00001eb309730 Zea mays HOM05D000718 ORTHO05D007431 5.7e-123 445.3 337 62.9
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 2.4e-121 439.9 415 56.4
Sc16g0007570 Simmondsia chinensis HOM05D000718 ORTHO05D007431 4.4e-115 419.1 299 69.9
CsaV3_4G033110 Cucumis sativus L. HOM05D000718 ORTHO05D007431 1.3e-114 417.5 300 65.7
vmacro11937 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 7.7e-104 381.7 329 62.0
AagrBONN_evm.TU.Sc2ySwM_228.1801 Anthoceros agrestis HOM05D000718 ORTHO05D007431 2.7e-101 373.2 453 44.6
vmacro23384 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 3.3e-99 366.3 343 58.0
SHI27609 Sapria himalayana HOM05D000718 ORTHO05D007431 3.7e-98 362.8 404 46.5
Thecc.07G114700 Theobroma cacao HOM05D000718 ORTHO05D007431 2.1e-93 347.1 376 48.9
BcaB06g29518 Brassica carinata HOM05D000718 ORTHO05D002712 8.0e-93 345.1 450 45.8
Sp3g13120 Schrenkiella parvula HOM05D000718 ORTHO05D007431 2.9e-87 326.6 224 65.6
Pp3c4_25540 Physcomitrium patens HOM05D000718 ORTHO05D007431 1.6e-85 320.9 463 38.7
SMO367G0522 Selaginella moellendorffii HOM05D000718 ORTHO05D007431 6.1e-85 318.9 457 40.7
Mapoly0061s0004 Marchantia polymorpha HOM05D000718 ORTHO05D007431 2.6e-83 313.5 453 39.5
Psat4g090840 Pisum sativum HOM05D000718 ORTHO05D007431 1.2e-77 294.7 244 63.5
vmacro11938 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 8.0e-77 292.0 297 54.2
Psat3g077000 Pisum sativum HOM05D000718 ORTHO05D007431 5.2e-76 289.3 253 54.2
MSTRG.14233 Avicennia marina HOM05D000718 ORTHO05D007431 3.0e-71 273.5 232 57.8
Sc16g0007580 Simmondsia chinensis HOM05D000718 ORTHO05D007431 6.8e-60 235.7 162 65.4
Thecc.07G115900 Theobroma cacao HOM05D000718 ORTHO05D007431 2.4e-57 227.3 157 63.7
Hund02252 Selenicereus undatus HOM05D000718 ORTHO05D007431 3.6e-45 186.8 172 63.4
MD11G1263700 Malus domestica HOM05D000718 ORTHO05D007431 1.1e-44 185.3 118 75.4
Cpa.g.sc77.7 Carica papaya HOM05D000718 ORTHO05D007431 4.2e-41 173.3 117 72.6
PGSC0003DMG400011947 Solanum tuberosum HOM05D000718 ORTHO05D007431 1.3e-39 168.3 119 66.4
Thecc.07G115200 Theobroma cacao HOM05D000718 ORTHO05D007431 3.3e-38 163.7 119 61.3
TAR627G0847 Trochodendron aralioides HOM05D000718 ORTHO05D007431 1.2e-35 155.2 127 59.1
Psat2g113040 Pisum sativum HOM05D000718 ORTHO05D004709 3.4e-27 127.1 102 66.7
CAN.G713.20 Capsicum annuum HOM05D000718 ORTHO05D007431 1.3e-21 108.6 83 60.2
CBR_g49411 Chara braunii HOM05D000019 ORTHO05D000353 8.4e-18 95.9 319 27.3
Thecc.07G114000 Theobroma cacao HOM05D000718 ORTHO05D007431 1.4e-17 95.1 99 46.5
Thecc.07G114100 Theobroma cacao HOM05D000718 ORTHO05D007431 1.2e-16 92.0 52 86.5
Thecc.07G113800 Theobroma cacao HOM05D000718 ORTHO05D007431 9.7e-14 82.4 63 60.3
Lsat_1_v5_gn_9_99920 Lactuca sativa HOM05D000718 ORTHO05D007431 5.1e-07 60.1 43 72.1


User provided reference genes

Program Settings