Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 7.1e-204 714.1 488 100.0
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 8.7e-202 707.2 488 99.4
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.5e-198 696.4 489 97.5
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 2.0e-198 696.0 489 98.4
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.0e-198 696.0 489 98.4
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 3.5e-179 632.1 492 92.5
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 7.0e-151 538.1 495 82.6
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 2.1e-147 526.6 497 81.3
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 4.5e-134 482.3 496 76.6
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 1.7e-120 437.2 507 71.6
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 5.9e-118 428.7 513 71.7
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 1.0e-114 417.9 500 72.0
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 3.9e-109 399.4 516 67.4
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 2.3e-106 390.2 516 67.8
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 1.5e-105 387.5 480 69.6
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 1.5e-105 387.5 493 69.2
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 3.4e-105 386.3 458 71.6
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 4.4e-105 386.0 503 69.6
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 7.5e-105 385.2 480 69.4
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 9.8e-105 384.8 488 68.0
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 9.8e-105 384.8 481 69.0
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 9.8e-105 384.8 481 69.0
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 1.3e-104 384.4 521 64.3
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 8.3e-104 381.7 481 69.0
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 1.4e-103 380.9 486 68.3
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 2.4e-103 380.2 494 71.1
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 6.0e-102 375.6 457 71.1
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 3.0e-101 373.2 485 67.8
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 3.0e-101 373.2 480 67.7
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 2.5e-100 370.2 480 67.5
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 3.3e-100 369.8 480 67.5
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 4.3e-100 369.4 480 65.6
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 7.3e-100 368.6 465 70.5
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 2.1e-99 367.1 477 67.7
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 1.2e-97 361.3 470 70.2
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 2.0e-97 360.5 469 57.6
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 7.6e-97 358.6 497 66.0
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 2.9e-96 356.7 503 65.8
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 8.4e-96 355.1 503 66.2
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 1.9e-95 354.0 513 64.9
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 1.9e-95 354.0 521 63.0
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 4.1e-95 352.8 493 67.7
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 1.2e-94 351.3 512 64.6
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 7.8e-94 348.6 510 64.3
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 1.3e-93 347.8 474 67.5
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 3.0e-93 346.7 510 63.7
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 3.0e-93 346.7 462 68.4
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 3.0e-93 346.7 491 67.2
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 1.5e-92 344.4 518 60.8
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 1.5e-92 344.4 455 65.7
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 1.6e-91 340.9 505 61.8
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 1.6e-91 340.9 506 62.5
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 2.1e-91 340.5 371 79.2
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 8.1e-91 338.6 525 62.5
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 1.8e-90 337.4 490 65.5
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 2.4e-90 337.0 440 68.6
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 2.4e-90 337.0 338 85.5
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 4.0e-90 336.3 460 68.3
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 6.9e-90 335.5 493 63.1
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 7.6e-89 332.0 477 63.7
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 1.7e-88 330.9 466 65.5
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 1.1e-87 328.2 438 68.5
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 1.4e-87 327.8 501 62.3
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 3.2e-87 326.6 462 68.0
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 3.5e-86 323.2 398 74.1
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 3.5e-86 323.2 502 62.5
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 4.6e-86 322.8 461 67.2
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 6.0e-86 322.4 501 65.1
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 7.8e-86 322.0 504 63.9
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 1.3e-85 321.2 491 61.9
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 3.9e-85 319.7 450 68.2
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 1.5e-84 317.8 484 63.8
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 3.6e-83 313.2 457 66.1
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 3.1e-82 310.1 502 61.4
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 3.1e-82 310.1 490 63.5
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 7.6e-81 305.4 517 59.6
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 9.9e-81 305.1 493 62.7
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 1.4e-79 301.2 514 59.7
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 5.4e-79 299.3 507 59.0
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 7.1e-79 298.9 375 74.1
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 1.2e-78 298.1 479 62.6
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 6.0e-78 295.8 375 76.0
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 2.3e-77 293.9 474 62.0
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 1.6e-75 287.7 518 55.6
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 1.1e-74 285.0 520 55.8
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 3.1e-74 283.5 443 62.5
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 3.1e-74 283.5 464 65.3
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 9.0e-74 282.0 449 61.2
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 4.5e-73 279.6 466 58.6
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 2.2e-72 277.3 292 88.7
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 1.2e-70 271.6 484 59.9
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 2.8e-67 260.4 450 60.7
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 5.3e-66 256.1 445 60.9
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 3.8e-64 250.0 475 56.4
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 5.7e-60 236.1 292 84.6
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 3.4e-57 226.9 336 71.4
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 1.3e-56 224.9 378 61.6
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 7.4e-52 209.1 303 58.7
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 1.6e-51 208.0 439 56.7
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 4.8e-51 206.5 267 49.1
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 1.2e-49 201.8 292 77.1
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 1.3e-48 198.4 235 87.7
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 4.6e-46 189.9 322 49.7
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 3.7e-43 180.3 463 31.5
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 9.1e-42 175.6 119 87.4
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 9.1e-42 175.6 352 60.5
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 1.2e-41 175.3 290 72.4
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 4.5e-41 173.3 475 52.4
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 6.3e-35 152.9 109 85.3
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 7.2e-31 139.4 350 58.3
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 1.0e-29 135.6 149 53.0
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 3.0e-21 107.5 325 53.8
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 5.2e-21 106.7 323 52.9
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 8.8e-21 105.9 331 29.3
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 2.6e-20 104.4 323 55.4
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 7.0e-18 96.3 54 81.5
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 1.2e-17 95.5 323 51.4
AagrBONN_evm.TU.Sc2ySwM_117.1902 Anthoceros agrestis HOM05D006454 ORTHO05D008024 7.5e-12 76.3 325 25.2
Oeu034554.1 Olea europaea HOM05D006454 ORTHO05D008024 4.9e-11 73.6 78 50.0
MCO01G181 Micromonas commoda HOM05D006454 ORTHO05D008024 7.0e-10 69.7 120 46.7
BcaNung06726 Brassica carinata HOM05D006454 ORTHO05D008024 3.5e-09 67.4 96 42.7
PRCOL_00000825 Prasinoderma coloniale HOM05D006454 ORTHO05D008024 2.3e-08 64.7 118 29.7


User provided reference genes

Program Settings