Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0892 Fragaria x ananassa HOM05D007598 ORTHO05D009632 3.4e-36 154.5 76 100.0
FAN16G2639 Fragaria x ananassa HOM05D007598 ORTHO05D009632 1.8e-34 148.7 76 96.1
FvH4_3g05470 Fragaria vesca HOM05D007598 ORTHO05D009632 3.0e-32 141.4 73 93.2
FAN21G2813 Fragaria x ananassa HOM05D007598 ORTHO05D009632 4.7e-30 134.0 75 90.7
FAN11G3574 Fragaria x ananassa HOM05D007598 ORTHO05D009632 5.2e-29 130.6 73 90.4
RcHm_v2.0_Chr5g0014281 Rosa chinensis HOM05D007598 ORTHO05D009632 5.4e-26 120.6 78 80.8
Psat1g188680 Pisum sativum HOM05D007598 ORTHO05D009632 9.5e-23 109.8 73 74.0
Sed0007826 Sechium edule HOM05D007598 ORTHO05D009632 1.6e-22 109.0 60 85.0
Prupe.4G081500 Prunus persica HOM05D007598 ORTHO05D009632 4.7e-22 107.5 75 72.0
arahy.Tifrunner.gnm1.ann1.A3G0A3 Arachis hypogaea HOM05D007598 ORTHO05D009632 2.0e-20 102.1 71 73.2
arahy.Tifrunner.gnm1.ann1.KTXA2U Arachis hypogaea HOM05D007598 ORTHO05D009632 3.4e-20 101.3 67 76.1
Glyma.13G218700 Glycine max HOM05D007598 ORTHO05D009632 5.8e-20 100.5 65 75.4
DCAR_027909 Daucus carota HOM05D007598 ORTHO05D009632 7.5e-20 100.1 62 77.4
MD05G1283100 Malus domestica HOM05D007598 ORTHO05D009632 7.5e-20 100.1 76 71.1
Medtr2g019240 Medicago truncatula HOM05D007598 ORTHO05D009632 9.9e-20 99.8 62 77.4
CiPaw.10G091200 Carya illinoinensis HOM05D007598 ORTHO05D009632 1.3e-19 99.4 58 84.5
Glyma.15G093500 Glycine max HOM05D007598 ORTHO05D009632 1.3e-19 99.4 66 74.2
Nitab4.5_0006887g0010 Nicotiana tabacum HOM05D007598 ORTHO05D009632 1.3e-19 99.4 59 79.7
MD10G1261400 Malus domestica HOM05D007598 ORTHO05D009632 2.2e-19 98.6 65 73.8
Cfa000936 Carpinus fangiana HOM05D007598 ORTHO05D009632 2.9e-19 98.2 62 80.6
Ca_00537_v3 Cicer arietinum L. HOM05D007598 ORTHO05D009632 2.9e-19 98.2 57 82.5
Lj6g0001552 Lotus japonicus HOM05D007598 ORTHO05D009632 2.9e-19 98.2 63 81.0
Cc00_g10360 Coffea canephora HOM05D007598 ORTHO05D009632 3.7e-19 97.8 61 80.3
Phvul.006G165400 Phaseolus vulgaris HOM05D007598 ORTHO05D009632 3.7e-19 97.8 69 68.1
SalBow8G5536 Salvia bowleyana HOM05D007598 ORTHO05D009632 4.9e-19 97.4 65 73.8
Thecc.06G149600 Theobroma cacao HOM05D007598 ORTHO05D009632 4.9e-19 97.4 79 65.8
Gohir.D10G042400 Gossypium hirsutum HOM05D007598 ORTHO05D009632 8.3e-19 96.7 56 83.9
Nitab4.5_0000420g0040 Nicotiana tabacum HOM05D007598 ORTHO05D009632 8.3e-19 96.7 58 79.3
Nn3g20182 Nelumbo nucifera HOM05D007598 ORTHO05D009632 1.9e-18 95.5 68 72.1
CAN.G702.32 Capsicum annuum HOM05D007598 ORTHO05D009632 2.4e-18 95.1 58 77.6
ClCG01G024670 Citrullus lanatus HOM05D007598 ORTHO05D009632 2.4e-18 95.1 78 67.9
Lalb_Chr20g0117881 Lupinus albus HOM05D007598 ORTHO05D009632 2.4e-18 95.1 58 79.3
Manes.17G070801 Manihot esculenta HOM05D007598 ORTHO05D009632 2.4e-18 95.1 61 78.7
Rhsim02G0159000 Rhododendron simsii HOM05D007598 ORTHO05D009632 2.4e-18 95.1 62 71.0
Atru.chr10.1775 Acer truncatum HOM05D007598 ORTHO05D009632 3.2e-18 94.7 79 63.3
CSS0006536 Camellia sinensis var. sinensis HOM05D007598 ORTHO05D009632 3.2e-18 94.7 65 72.3
Solyc02g070470.1 Solanum lycopersicum HOM05D007598 ORTHO05D009632 3.2e-18 94.7 58 75.9
Sopen02g019560 Solanum pennellii HOM05D007598 ORTHO05D009632 3.2e-18 94.7 58 75.9
Cpa.g.sc170.27 Carica papaya HOM05D007598 ORTHO05D009632 4.1e-18 94.4 64 73.4
Duzib235G0096 Durio zibethinus HOM05D007598 ORTHO05D009632 4.1e-18 94.4 64 75.0
Potri.011G084300 Populus trichocarpa HOM05D007598 ORTHO05D009632 4.1e-18 94.4 57 80.7
MELO3C007128.2 Cucumis melo HOM05D007598 ORTHO05D009632 5.4e-18 94.0 59 79.7
AL4G30560 Arabidopsis lyrata HOM05D007598 ORTHO05D009632 7.1e-18 93.6 63 73.0
CSS0035986 Camellia sinensis var. sinensis HOM05D007598 ORTHO05D009632 7.1e-18 93.6 57 80.7
Dinv32243 Davidia involucrata HOM05D007598 ORTHO05D009632 7.1e-18 93.6 59 76.3
Migut.M01992 Erythranthe guttata HOM05D007598 ORTHO05D009632 9.2e-18 93.2 71 66.2
PGSC0003DMG400021093 Solanum tuberosum HOM05D007598 ORTHO05D009632 9.2e-18 93.2 56 80.4
Aa31LG10G6810 Aethionema arabicum HOM05D007598 ORTHO05D009632 1.6e-17 92.4 76 59.2
Ah.14g086510 Amaranthus hybridus HOM05D007598 ORTHO05D009632 1.6e-17 92.4 54 75.9
AUR62002748 Chenopodium quinoa HOM05D007598 ORTHO05D009632 1.6e-17 92.4 61 72.1
AUR62030196 Chenopodium quinoa HOM05D007598 ORTHO05D009632 1.6e-17 92.4 61 72.1
CsaV3_6G051780 Cucumis sativus L. HOM05D007598 ORTHO05D009632 1.6e-17 92.4 59 78.0
QL05p057697 Quercus lobata HOM05D007598 ORTHO05D009632 2.1e-17 92.0 60 80.0
Sabra11G0066800 Salix brachista HOM05D007598 ORTHO05D009632 2.1e-17 92.0 75 65.3
Actinidia39580 Actinidia chinensis HOM05D007598 ORTHO05D009632 2.7e-17 91.7 59 74.6
Migut.M00903 Erythranthe guttata HOM05D007598 ORTHO05D009632 2.7e-17 91.7 78 60.3
HanXRQChr04g0114301 Helianthus annuus HOM05D007598 ORTHO05D009632 2.7e-17 91.7 57 77.2
Sp4g16850 Schrenkiella parvula HOM05D007598 ORTHO05D009632 2.7e-17 91.7 58 74.1
Sc05g0006160 Simmondsia chinensis HOM05D007598 ORTHO05D009632 2.7e-17 91.7 67 59.7
AT2G34585 Arabidopsis thaliana HOM05D007598 ORTHO05D009632 3.5e-17 91.3 63 71.4
CARHR128680 Cardamine hirsuta HOM05D007598 ORTHO05D009632 4.6e-17 90.9 64 70.3
EL10Ac8g19673 Beta vulgaris HOM05D007598 ORTHO05D009632 6.0e-17 90.5 58 74.1
THA.LOC104820651 Tarenaya hassleriana HOM05D007598 ORTHO05D009632 6.0e-17 90.5 57 77.2
TAR626G0451 Trochodendron aralioides HOM05D007598 ORTHO05D009632 6.0e-17 90.5 55 80.0
Carub.0004s1626 Capsella rubella HOM05D007598 ORTHO05D009632 7.8e-17 90.1 48 85.4
Nitab4.5_0002744g0030 Nicotiana tabacum HOM05D007598 ORTHO05D009632 7.8e-17 90.1 55 80.0
Actinidia07703 Actinidia chinensis HOM05D007598 ORTHO05D009632 1.0e-16 89.7 59 74.6
BcaB06g28784 Brassica carinata HOM05D007598 ORTHO05D009632 1.0e-16 89.7 57 73.7
HanXRQChr15g0480881 Helianthus annuus HOM05D007598 ORTHO05D009632 1.0e-16 89.7 48 85.4
PGR042G1521 Punica granatum HOM05D007598 ORTHO05D009632 1.0e-16 89.7 48 89.6
CANSAT35G0825 Cannabis sativa HOM05D007598 ORTHO05D009632 1.3e-16 89.4 48 85.4
Aqoxy7G00246 Aquilegia oxysepala HOM05D007598 ORTHO05D009632 1.7e-16 89.0 59 72.9
A04p26490 Brassica napus HOM05D007598 ORTHO05D009632 1.7e-16 89.0 48 83.3
C04p63910 Brassica napus HOM05D007598 ORTHO05D009632 1.7e-16 89.0 48 83.3
BolC4t27858H Brassica oleracea HOM05D007598 ORTHO05D009632 1.7e-16 89.0 48 83.3
BraA04t18153Z Brassica rapa HOM05D007598 ORTHO05D009632 1.7e-16 89.0 48 83.3
PSO541G2526 Papaver somniferum HOM05D007598 ORTHO05D009632 3.9e-16 87.8 64 65.6
Thhalv10017600m.g Eutrema salsugineum HOM05D007598 ORTHO05D009632 6.6e-16 87.0 48 83.3
Lsat_1_v5_gn_7_28481 Lactuca sativa HOM05D007598 ORTHO05D009632 6.6e-16 87.0 57 73.7
Rhsim13G0114100 Rhododendron simsii HOM05D007598 ORTHO05D009632 8.6e-16 86.7 62 64.5
COL.COLO4_31062 Corchorus olitorius HOM05D007598 ORTHO05D009632 1.1e-15 86.3 46 87.0
unitig_749.g13736 Utricularia gibba HOM05D007598 ORTHO05D009632 1.9e-15 85.5 48 81.2
TWI53G0871 Tripterygium wilfordii HOM05D007598 ORTHO05D009632 3.3e-15 84.7 48 83.3
MBI02_g15148_MAGBIO Magnolia biondii HOM05D007598 ORTHO05D009632 4.3e-15 84.3 58 72.4
Ciclev10017916m.g Citrus clementina HOM05D007598 ORTHO05D009632 5.6e-15 84.0 62 71.0
ECA236G0778 Erigeron canadensis HOM05D007598 ORTHO05D009632 5.6e-15 84.0 46 82.6
ATR1098G093 Amborella trichopoda HOM05D007598 ORTHO05D009632 9.5e-15 83.2 56 71.4
HPP92_000988 Vanilla planifolia HOM05D007598 ORTHO05D009632 1.6e-14 82.4 47 80.9
PGSC0003DMG400012092 Solanum tuberosum HOM05D007598 ORTHO05D009632 2.8e-14 81.6 48 77.1
Os07g0154300 Oryza sativa ssp. japonica HOM05D007598 ORTHO05D009632 1.2e-12 76.3 48 70.8
Zm00001eb117510 Zea mays HOM05D007598 ORTHO05D009632 2.0e-12 75.5 58 63.8
SEGI_36626 Sequoiadendron giganteum HOM05D007598 ORTHO05D009632 4.4e-12 74.3 59 57.6
Mapoly0055s0099 Marchantia polymorpha HOM05D007598 ORTHO05D009632 4.1e-10 67.8 48 60.4
Pp3c14_11250 Physcomitrium patens HOM05D007598 ORTHO05D009632 3.0e-08 61.6 48 54.2
Actinidia16706 Actinidia chinensis HOM05D000667 ORTHO05D004096 1.1e-07 59.7 60 53.3
SEGI_00564 Sequoiadendron giganteum HOM05D007598 ORTHO05D009632 1.2e-06 56.2 75 37.3
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 1.6e-06 55.8 75 41.3


User provided reference genes

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