Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.5e-164 582.8 290 100.0
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 5.4e-127 458.0 290 81.7
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 5.4e-127 458.0 290 81.7
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 5.4e-127 458.0 290 81.7
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 9.9e-121 437.2 290 78.6
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 2.9e-120 435.6 290 77.9
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.9e-120 435.6 290 77.9
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 6.7e-117 424.5 295 75.9
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 5.5e-111 404.8 314 71.7
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 3.9e-101 372.1 296 65.5
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 2.2e-99 366.3 295 65.1
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 3.1e-90 335.9 291 60.1
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 9.1e-90 334.3 291 60.1
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 2.0e-89 333.2 294 59.2
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 1.1e-87 327.4 299 58.2
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 5.5e-87 325.1 297 57.6
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 9.4e-87 324.3 293 57.3
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 2.1e-86 323.2 292 59.6
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 3.6e-86 322.4 292 58.2
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 1.4e-85 320.5 293 56.3
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 1.4e-85 320.5 284 58.1
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 3.0e-85 319.3 283 56.9
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 6.7e-85 318.2 282 58.2
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 6.7e-85 318.2 291 56.0
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 8.8e-85 317.8 267 59.6
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 8.8e-85 317.8 275 56.7
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 2.0e-84 316.6 300 55.0
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 5.7e-84 315.1 301 56.1
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 3.7e-83 312.4 290 56.9
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 3.7e-83 312.4 297 56.2
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 4.8e-83 312.0 256 60.5
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 4.8e-83 312.0 245 62.4
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 8.2e-83 311.2 257 60.7
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 8.2e-83 311.2 258 59.7
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 1.8e-82 310.1 257 60.7
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 2.4e-82 309.7 274 58.4
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 2.4e-82 309.7 274 58.4
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 4.1e-82 308.9 264 58.3
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 4.1e-82 308.9 282 56.7
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 5.3e-82 308.5 257 58.8
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 5.3e-82 308.5 287 55.4
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 5.3e-82 308.5 245 61.6
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 9.1e-82 307.8 284 57.0
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 9.1e-82 307.8 245 60.4
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 1.2e-81 307.4 294 53.7
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 2.0e-81 306.6 257 59.9
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 3.5e-81 305.8 291 53.6
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 4.5e-81 305.4 290 54.8
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 5.9e-81 305.1 263 57.0
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 5.9e-81 305.1 293 55.3
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 7.7e-81 304.7 294 54.8
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 7.7e-81 304.7 291 54.6
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 1.0e-80 304.3 290 54.8
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 1.3e-80 303.9 293 54.3
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 1.3e-80 303.9 291 55.3
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 2.9e-80 302.8 290 54.5
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 2.9e-80 302.8 290 54.5
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 2.9e-80 302.8 287 53.7
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 3.8e-80 302.4 258 58.1
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 3.8e-80 302.4 263 56.7
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 5.0e-80 302.0 269 58.0
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 5.0e-80 302.0 293 54.6
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 1.5e-79 300.4 293 52.9
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 1.9e-79 300.1 283 54.8
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 3.2e-79 299.3 287 54.0
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 3.2e-79 299.3 289 54.0
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 3.2e-79 299.3 289 54.0
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 3.2e-79 299.3 294 54.4
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 3.2e-79 299.3 304 51.6
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 4.2e-79 298.9 293 55.6
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 5.5e-79 298.5 296 52.7
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 7.2e-79 298.1 293 53.2
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 9.4e-79 297.7 298 52.3
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 9.4e-79 297.7 288 52.4
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 1.6e-78 297.0 287 54.0
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 1.6e-78 297.0 290 53.4
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 2.1e-78 296.6 290 52.8
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 2.1e-78 296.6 288 52.1
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 2.7e-78 296.2 292 51.0
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 2.7e-78 296.2 290 52.8
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 2.7e-78 296.2 296 52.4
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 2.7e-78 296.2 245 59.2
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 4.7e-78 295.4 291 52.6
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 4.7e-78 295.4 251 57.0
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 4.7e-78 295.4 296 53.0
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 4.7e-78 295.4 297 52.2
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 6.1e-78 295.0 258 55.4
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 6.1e-78 295.0 287 51.9
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 8.0e-78 294.7 247 59.9
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 8.0e-78 294.7 294 53.4
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 8.0e-78 294.7 296 52.4
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 1.0e-77 294.3 298 52.3
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.4e-77 293.9 247 58.3
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 1.8e-77 293.5 245 58.4
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 5.2e-77 292.0 280 55.0
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 4.4e-76 288.9 300 50.7
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 5.7e-76 288.5 241 58.9
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 5.7e-76 288.5 264 56.1
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 7.5e-76 288.1 295 51.9
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 2.8e-75 286.2 250 56.8
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 3.7e-75 285.8 290 51.4
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 8.2e-75 284.6 251 56.2
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 2.5e-71 273.1 219 62.1
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 1.8e-69 266.9 258 52.7
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 3.4e-68 262.7 317 50.2
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 7.5e-68 261.5 290 50.0
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 2.2e-67 260.0 157 76.4
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 3.7e-67 259.2 249 53.0
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.4e-66 257.3 351 41.6
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 2.5e-63 246.5 136 83.1
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 2.3e-56 223.4 259 45.6
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 1.2e-52 211.1 163 60.7
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 2.0e-52 210.3 266 44.4
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 5.7e-52 208.8 236 44.1
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 8.3e-51 204.9 293 41.6
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 2.0e-49 200.3 119 78.2
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 1.7e-48 197.2 256 39.8
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 8.9e-45 184.9 249 37.3
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 6.4e-43 178.7 106 78.3
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 4.1e-42 176.0 194 52.1
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 3.9e-40 169.5 100 77.0
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 1.9e-39 167.2 237 35.0
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 5.6e-39 165.6 100 78.0
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 3.6e-38 162.9 201 42.3
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 4.0e-37 159.5 237 39.2
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 5.2e-37 159.1 97 76.3
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 2.0e-36 157.1 100 74.0
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 3.4e-36 156.4 201 40.8
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 7.3e-31 138.7 156 46.8
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 1.4e-29 134.4 87 73.6
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 4.1e-26 122.9 100 56.0
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 7.8e-25 118.6 171 41.5
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 1.0e-24 118.2 188 38.8
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 8.1e-22 108.6 131 42.7
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 6.9e-21 105.5 89 56.2
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 6.9e-21 105.5 89 56.2
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 1.5e-20 104.4 69 66.7
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 2.0e-20 104.0 72 65.3
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 2.0e-20 104.0 72 65.3
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 3.4e-20 103.2 143 37.8
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 4.4e-20 102.8 102 55.9
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 7.6e-20 102.1 71 64.8
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 7.6e-20 102.1 127 44.9
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 8.4e-19 98.6 93 53.8
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 4.3e-15 86.3 168 32.1
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 1.4e-13 81.3 75 52.0
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 1.3e-11 74.7 106 39.6
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 6.4e-11 72.4 45 71.1
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 1.6e-09 67.8 44 65.9
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 1.6e-09 67.8 44 65.9
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 7.9e-09 65.5 92 32.6
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 3.9e-08 63.2 158 29.7
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 8.7e-08 62.0 63 42.9
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 1.1e-07 61.6 39 71.8
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 4.3e-07 59.7 56 48.2
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 7.4e-07 58.9 55 50.9
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 1.3e-06 58.2 40 62.5
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 3.7e-06 56.6 46 52.2


User provided reference genes

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